Ec-sdr_f_000120.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: D7G951_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI) HSP 1 Score: 274 bits (701), Expect = 5.080e-91 Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1 Query: 1 MGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVPAGGRPEP 402 MGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVPAGGR +P Sbjct: 144 MGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVPAGGRHDP 277
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: A0A6H5K130_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K130_9PHAE) HSP 1 Score: 190 bits (483), Expect = 2.160e-60 Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 1 Query: 97 MPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVPAGGRPEP 402 MPSQEPLHLHV+SMDLDGTGLKRKTHWNSFTTDLFLE SWVERRLEERGS+GLDM ELEHVKLRCFRCPGEPEFR +ESLKAHNRACTAPVPA GR +P Sbjct: 1 MPSQEPLHLHVISMDLDGTGLKRKTHWNSFTTDLFLETSWVERRLEERGSIGLDM----ELEHVKLRCFRCPGEPEFRDLESLKAHNRACTAPVPAAGRHDP 98
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: D8LEA7_ECTSI (FHA-HIT protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.220e-33 Identity = 68/125 (54.40%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 7 TALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPVP 381 TA+A+ALS Q A VIRCGYH +PS EPLHLH++S D D L ++ HWNSFTTD FL+ASWVE RL ERGSLGLD + LE LRCFRC +M LK H C PVP Sbjct: 358 TAVAEALSQQ---------GAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKERLKALEATPLRCFRCHSP--MTNMTKLKEHLLGCNLPVP 471
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: A0A2T7NC58_POMCA (C2H2-type domain-containing protein n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NC58_POMCA) HSP 1 Score: 84.0 bits (206), Expect = 3.300e-18 Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 79 RCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAH 354 R GYHA+PS LH+HV+S DLD LK K HWNSFTTD F+++ + +LE+ G + ++ + +E LRC C EF + +LK+H Sbjct: 19 RFGYHAIPSMSHLHMHVISQDLDSPCLKTKKHWNSFTTDYFIDSKKIIHQLEKTGKIEVNEQETKEFLKADLRCHVC--RKEFTTIPALKSH 108
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: A0A1X7UPR7_AMPQE (HIT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UPR7_AMPQE) HSP 1 Score: 86.3 bits (212), Expect = 4.170e-18 Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 61 PSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNR 360 P + GYHA+PS LH+HV+S D D LK K HWNSFTTD F++A+ + + +EE+G + +D + L L C C E R+M +LK+H R Sbjct: 115 PDYPQFKYGYHAIPSMNRLHMHVISCDFDSPSLKNKKHWNSFTTDFFIDAARLIKMVEEKGRVVIDKEYYESLLKKNLSCHVCRREQ--RNMPTLKSHIR 212
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: A0A1S3HE27_LINUN (aprataxin-like n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HE27_LINUN) HSP 1 Score: 85.5 bits (210), Expect = 6.870e-18 Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 31 LQAEVRELSHPSANV-IRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAH 354 +Q + +EL+ S R GYH +PS +HLHV+S D D LK K HWNSFT++ F+++S V ++LEE+GS+ +D F L+C C + +F+ M +LK+H Sbjct: 92 MQKKGQELADKSPQCQFRLGYHGIPSMSQVHLHVISQDFDSPCLKTKKHWNSFTSEYFIDSSDVIKQLEEKGSVTVDTGKFEGYLKQALKCHVC--KKDFKTMPALKSH 198
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: A0A6H5KUS4_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 9.500e-18 Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 52 LSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDM 261 LS IR G HA+PS EPLH+H++S D D ++ HWN FTTD+FLE +W+E LE G L LDM Sbjct: 120 LSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERMRMPRHWNIFTTDIFLEPAWIEEMLERHGCLQLDM 189
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: K1QM08_CRAGI (Aprataxin n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QM08_CRAGI) HSP 1 Score: 84.0 bits (206), Expect = 2.320e-17 Identity = 45/105 (42.86%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 40 EVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAH 354 E E S P R GYHA+PS LHLHV+S D D LK K HWNSFTT+ F+++ + + LE+ G + D+ + +EL LRC C E M +LK H Sbjct: 91 ETAEKSDPDLQ-FRLGYHAVPSMSHLHLHVISQDFDSPCLKNKKHWNSFTTEYFVDSEDIIKELEKNGKVIKDVSHSQELLKKNLRCHVC--RKEMTTMPALKTH 192
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: UPI00189BF520 (aprataxin isoform X3 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189BF520) HSP 1 Score: 84.7 bits (208), Expect = 4.210e-17 Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 79 RCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRA 363 R GYHA+PS LHLHV+S D D LK K HWNSFTTD F++A V + LE G + ++ N EL LRC RCP E M +LK H R+ Sbjct: 178 RTGYHAIPSLSHLHLHVISQDFDSPCLKNKKHWNSFTTDYFMDAQHVIQMLETSGKVTVEDGN-EELLKRPLRCHRCPKECPT--MPALKEHLRS 269
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Match: A0A1V9X262_9ACAR (Aprataxin-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X262_9ACAR) HSP 1 Score: 84.0 bits (206), Expect = 4.620e-17 Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1 Query: 64 SANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSL-GLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAH 354 S R GYHA+PS LHLHV+S D + LK K HWNSFTTD F++++ + + + E GS G++ R EL L+C RC +P + M LK H Sbjct: 137 SEKEFRLGYHAVPSMVQLHLHVISQDFNSPSLKTKKHWNSFTTDFFVDSAKLVKAIRENGSFPGVERRIADELLKKDLKCHRCGNKP--KTMPQLKEH 232 The following BLAST results are available for this feature:
BLAST of Ec-sdr_f_000120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-sdr_f_000120.1 ID=Ec-sdr_f_000120.1|Name=Ec-sdr_f_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=141bpback to top spliced messenger RNA >Ec-sdr_f_000120.1 ID=Ec-sdr_f_000120.1|Name=Ec-sdr_f_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=423bp|location=Sequence derived from alignment at sdr_f:463311..464554+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGGGAACTGCGCTGGCGAAGGCCTTGTCCCTTCAGGCGGAAGTCAGGGAback to top protein sequence of Ec-sdr_f_000120.1 >Ec-sdr_f_000120.1 ID=Ec-sdr_f_000120.1|Name=Ec-sdr_f_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=141bp MGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGback to top mRNA from alignment at sdr_f:463311..464554+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-sdr_f_000120.1 ID=Ec-sdr_f_000120.1|Name=Ec-sdr_f_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1244bp|location=Sequence derived from alignment at sdr_f:463311..464554+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at sdr_f:463311..464554+ >Ec-sdr_f_000120.1 ID=Ec-sdr_f_000120.1|Name=Ec-sdr_f_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=423bp|location=Sequence derived from alignment at sdr_f:463311..464554+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-sdr_f_000120.1' has the following synonyms
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