Ec-28_002400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_002400.1
Unique NameEc-28_002400.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length734
Homology
BLAST of Ec-28_002400.1 vs. uniprot
Match: D7FXN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN3_ECTSI)

HSP 1 Score: 1133 bits (2931), Expect = 0.000e+0
Identity = 649/691 (93.92%), Postives = 650/691 (94.07%), Query Frame = 1
Query:  313 SLVSSTSSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVG-GSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 2382
            S V S +SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVG GSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR                                     PERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL
Sbjct:    6 SRVVSLNSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR-------------------------------------PERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 659          
BLAST of Ec-28_002400.1 vs. uniprot
Match: A0A6H5L7Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q0_9PHAE)

HSP 1 Score: 1120 bits (2896), Expect = 0.000e+0
Identity = 650/745 (87.25%), Postives = 666/745 (89.40%), Query Frame = 1
Query:  184 MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTSSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXX-TESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVG-GSDDGSGVSISVERATEIATIPTITPPPFQGGQQAA----AAAATSIPSVAQPSPAGETP-----EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGG-SRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 2382
            MSHW+RLLLSSL GGE VNSWPPGFGDVARPLASPRHTQN NRSLVSS SSSVASTASRVRKRRPSVLGGGFSTAGSCA+SSP SIQGSWIEDDTDPKAGPCWQQRDA RVGHPA R+GSRSDGH+DXXXXXXXXXXXX      TESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXX  YDGTANETHQVEAGVRNK KTLGGAATSIGTAIAYVG GSDDGSGVSISVERATEI TIPTITPPPF+G QQAA    AAAATSI SVAQPSP  ETP     ++ +QSPAS+SAGEG SAKS MTPTRMGLAASAPNLPTLGSMNNESDQ SS S SRFPQVLPRQRW QEGRGASVRHRAGLAVAAGGGL GCGVL DG GQKVFHNFVFRRNKRRKDRKPLR TLASLDDNATDYQA  SAGG  GRRAAG RCGGHSSSS SGSSVEMT+SSL RRQNWE+HPSGDWDRPERPGQMNRT PPPR P DAFSVVSFSSSGSA SP SSPPANGQR GGG CSSGVGRRPVKCQRCGSGRVKLFATTV SARRSPTHLLRQP  GASSDS+CARA HTRENAGGGG SRNGG P+Y  AGSGS +S TDRLRL PVSNRH Q+ N   VTSMLSP RKNLAGLSDTGRI TGG  L ELRGGERNAANRPRGL+DGAAVVGSRKASVRPPPGGGIIIPAPKPHL T VSSGGSGL
Sbjct:    1 MSHWERLLLSSLSGGEPVNSWPPGFGDVARPLASPRHTQNKNRSLVSSASSSVASTASRVRKRRPSVLGGGFSTAGSCAASSPNSIQGSWIEDDTDPKAGPCWQQRDADRVGHPATRKGSRSDGHEDXXXXXXXXXXXXEDHDKKTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXQQYDGTANETHQVEAGVRNKVKTLGGAATSIGTAIAYVGNGSDDGSGVSISVERATEIVTIPTITPPPFRGWQQAAPNAAAAAATSIHSVAQPSPTRETPGIVTLKVSSQSPASKSAGEGVSAKSAMTPTRMGLAASAPNLPTLGSMNNESDQRSSGSVSRFPQVLPRQRWRQEGRGASVRHRAGLAVAAGGGLEGCGVLQDGRGQKVFHNFVFRRNKRRKDRKPLRDTLASLDDNATDYQAVASAGGISGRRAAGRRCGGHSSSSCSGSSVEMTESSLRRRQNWESHPSGDWDRPERPGQMNRTRPPPRMPRDAFSVVSFSSSGSARSPCSSPPANGQRVGGGPCSSGVGRRPVKCQRCGSGRVKLFATTVASARRSPTHLLRQPHSGASSDSFCARARHTRENAGGGGGSRNGGIPTYCDAGSGSRSS-TDRLRLGPVSNRHKQQRNTHLVTSMLSPWRKNLAGLSDTGRIGTGGELLGELRGGERNAANRPRGLIDGAAVVGSRKASVRPPPGGGIIIPAPKPHLMTRVSSGGSGL 744          
BLAST of Ec-28_002400.1 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.720e-15
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = -2
Query: 4118 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQV 4252
            QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQ+
Sbjct:   69 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQL 113          
BLAST of Ec-28_002400.1 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.950e-11
Identity = 49/75 (65.33%), Postives = 51/75 (68.00%), Query Frame = -2
Query: 4118 RSSGRGEQGXXXXXXXXXXXXXXXXXXXXXQLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQV 4342
            RSSGRGE G                     QLGIRE+MKAKAESDLR RKAREEEMS GATLKVAALWLVLISQ+
Sbjct:  265 RSSGRGELGDGGRAAGEGGQQQQ-------QLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQL 332          
The following BLAST results are available for this feature:
BLAST of Ec-28_002400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXN3_ECTSI0.000e+093.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7Q0_9PHAE0.000e+087.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN2_ECTSI6.720e-1597.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Y5_9PHAE2.950e-1165.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2200135..2206392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length4345
Hectar predicted targeting categoryother localisation
Gene idEc-28_002400.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002400Ec-28_002400Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 2200135..2206392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002400.1Ec-28_002400.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 2202094..2206208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002400.1.4Ec-28_002400.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2200135..2202826 -
Ec-28_002400.1.3Ec-28_002400.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2203749..2204011 -
Ec-28_002400.1.2Ec-28_002400.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2204397..2204871 -
Ec-28_002400.1.1Ec-28_002400.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2205478..2206392 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0024003UTR:Ec-28_002400.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 2200135..2202093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002400.1CDS:Ec-28_002400.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 2202094..2202826 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0024005UTR:Ec-28_002400.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 2206209..2206392 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=734bp
MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTS
SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAG
PCWQQRDAGRVGHPAIRRGSRSDGHDDDDDDDRDEEEEEDHDNNTESTEI
TVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATATATANS
QQRQQQQYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGGSDDGS
GVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETP
EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHS
SRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGG
QKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAA
GWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRT
CPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPV
KCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTREN
AGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSM
LSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGS
RKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL*
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spliced messenger RNA

>Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4345bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGTCCTTTTGGTGGCAGGCGTTCTAAAGGCCATGGTGATGTCCTCCTCTA
GAGTCGTTTCGCTCAATTCTTCAGGTCAGCAGCTCTATATAAAGAACTCG
ACCAAAGACAGACAAAGACGGGGCATGTAATACCAGATTTTGAACGGTTA
TCGACTTAACTGCGACGGTCGCGTGTGGACACACATGTCGCACTGGCAGC
GGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAACAGTCAATTCCTGGCCG
CCAGGGTTTGGAGATGTTGCGAGACCTCTGGCATCGCCTAGACACACCCA
AAACAACAATCGATCCCTTGTTTCCTCAACATCGTCGTCAGTCGCAAGTA
CCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGTGCTGGGTGGCGGCTTC
TCTACGGCCGGATCATGTGCATCATCGTCCCCAAAAAGCATCCAAGGTTC
CTGGATCGAGGACGACACAGACCCGAAGGCTGGACCCTGCTGGCAGCAGC
GAGATGCCGGTCGTGTGGGCCACCCTGCAATAAGGAGAGGATCAAGATCA
GACGGCCACGACGACGACGACGACGACGACCGCGACGAAGAGGAGGAGGA
GGACCACGACAACAATACCGAAAGCACCGAGATCACTGTGGTCGGGTGGG
GAGATCGCAGCAGCAGACGTAACTCGTCACGGCGTGCCTCTCGAGAAGAG
ACGGCAGAATGGAACGATGGCCGACCGCGAAGGTTGTCTAGCAAGGGCGT
GGTGCTTGCTACAGCTACCGCCACTGCGAACTCGCAGCAGCGACAGCAGC
AGCAGTATGACGGCACAGCAAACGAGACCCACCAAGTGGAAGCTGGTGTG
CGCAACAAAGACAAAACTCTCGGAGGAGCGGCAACCAGCATCGGGACTGC
CATTGCGTACGTCGGCGGCAGTGACGACGGATCGGGGGTGTCGATCAGTG
TGGAGCGCGCCACTGAAATCGCCACAATCCCGACGATCACGCCTCCCCCC
TTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCGCAACAAGCATACCCAG
CGTCGCACAACCGTCTCCCGCTGGTGAAACACCCGAAATCGGAACCCAAT
CACCGGCGTCACAGTCAGCGGGGGAGGGGGCATCAGCCAAGTCTGGAATG
ACGCCGACCAGGATGGGTCTGGCCGCATCGGCGCCGAACCTGCCAACCCT
CGGCTCGATGAACAACGAAAGCGATCAACATAGCAGCAGAAGCGGCTCTC
GATTTCCGCAGGTGTTGCCACGGCAACGGTGGTGTCAGGAAGGGCGGGGT
GCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCGCGGCGGGAGGAGGGCT
GGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGGCAAAAAGTGTTCCACA
ACTTCGTGTTCCGCCGCAACAAGCGCCGCAAAGACCGGAAACCGTTGCGC
GCCACCCTGGCGTCTCTCGACGACAACGCAACGGACTACCAAGCGGCGTA
TTCGGCGGGAGGCACGAGAGGAAGAAGGGCTGCGGGTTGGAGGTGTGGCG
GCCATAGCAGCAGCAGCGGCAGCGGCAGCAGCGTGGAGATGACGGATTCA
TCGCTGCATCGTCGGCAAAATTGGGAAACACACCCTTCGGGAGATTGGGA
CAGACCCGAGCGCCCGGGGCAGATGAATCGAACGTGCCCGCCCCCGCGGA
CGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAGTTCTTCTGGTTCCGCT
CTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCCAGCGGGCCGGCGGTGG
CACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTGAAGTGCCAGAGGTGCG
GGTCGGGCAGGGTGAAACTCTTTGCGACGACGGTTGTATCAGCCCGCCGC
TCGCCGACCCACCTTCTTCGTCAACCGCCTAGGGGTGCCAGCAGCGACAG
TTATTGTGCAAGGGCCGGACATACGCGGGAGAACGCTGGCGGCGGCGGTA
GTCGAAACGGCGGCACCCCGAGTTATAGCGTTGCCGGTAGTGGTAGTAGC
ACGAGCTGCACAGATCGGCTTCGGTTAGCACCGGTGAGCAATCGCCACAC
GCAGCGGGGAAACGCCCGTAAGGTTACGTCGATGTTGTCTCCACGGCGCA
AGAACCTCGCGGGGTTGAGCGACACCGGCCGAATCAGCACGGGAGGGGTA
TCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACGCGGCGAACCGTCCGCG
CGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGCAGGAAGGCATCGGTCA
GACCACCGCCCGGCGGCGGTATCATCATCCCAGCACCGAAACCACACCTC
AGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCTGATACACACAGGCCCA
CTTGAAGAAAGCCTAGGTGTGTCCGGAGAGGGGCGAAGCTTTCAAGAACT
CACCTTGCCCCATGCTACACTGGCTTGTAGCGAATGCTGGCACCTTGGCA
TTTTGGACTCTGCCGATACAAATCCTTGGTAATATTGCGTGCAAATTGAA
GATGTAACGTCAACGAGTATCATGGAGATTGTGACCAGGCAAACATGAAC
AAAATGAAATGGGATTCCCAGCTGATGCGGCTCGACCTATGCTGGTGCGA
ACTTCACAAAGGTGTGTTGGTTGTGCCCGTCTTCACGTCTGTACCGCTGC
TCCTGGAGTGTGACGCCGAGGTTGCCCTTGCCGGCCGTTCAGAGTTTTCG
TTCACATCTTGGTCGCTCCTCACACACTAGGCTGTTCAGAGTTCTTTTCA
CGTCTTGATCGCTTCTCACACAACACTCGTTTCGAAAACGTAACATGCGC
ACGCGAAGCTATCCGCCCTGTCTAATTTGAGGCTCTTGCTGCCTCTCGTC
TTAAACAGCAACGTACACCCCAAGGAGACGTGCGTCTCCACTCTTTTGCC
GGATCAGCACTGCGCAGAGAAACGACATCTATTTACCACCGCATATCTCC
GCCTCTCGACGTCATATTCGTTCTGTGGCGATTGTACACAGGACGATCGG
TCTCGTAAAACACGGCCTTTGTGACGCCTCTTCCTCTTGTGCCGATCATT
CATGTCCGCCAGAAAGACTGCCACCTCCATGCCGACAACTAAAACGCACG
GGGAATCGCACTCGCACATTACAGTTGACTTAGACGTACTCGAAATTGAA
GTGCGTCGAATGCGAACCTAGAATAATGCTCGCACTGCAAAATCTCGATG
CAGCAGAACGGTATGAACAATCGATTGATCCGGCGCTGAACCAACCTGAC
ACACGCGCACCAGACCATGAATCCCAAACCTGCAATCTTCGTCAACCCCT
CTCCATGGACTATTGTTCCCTATCACACCACGCACAACTCTGTCCCGACC
TAACACCTGACGAACCGGGTACAGCTCCACTTATTCACACCGACAGACAA
AACCAACGTGCCCCTCTCAGTCTTGCAGAAACGTCGACGATGCGGGACCC
ATTGGGTCGTTCCACAACACCACCAGTAGCCACAGCTGCAGATGGGGAGG
GGGGGGGGGGGGGAGGGCTGATAATAGGGCATGGAGAGCTGGCGCAGACG
CGGGGGGTCGTGCTTCCGAGCGAACCAAGCGCACAGCGAAGGTAGAGAAA
CCAGATGGCGGGTGCCATGACGAGCTGTGCGTGTGCCGTAGGTTGCATGA
CGTAAGATACCACATACCCTGGACCCATTTGTGCCGTAGGTTGCATGACG
TAAGATACCACACACCCTGGACCCATTTGTGCCGTAGGTTGCATGACGTA
AGATACCACATACCCTGGACCCATTTGTGCCGTAGGTTGCATGACGTAAG
ATACCGCACCCCCTGAACCTTTTTTCACAGCCCGATTACTCTGCAGCACA
ACCATGGACTGTGCCGAGAATGGTGGCGTTGGAGCCTTTTTGTCGAGAGT
TTTCCGAAAACGCACAATTTTATGTTGGCATCATGTTCTTTGTGGAGTAC
CCGGGCTTTGGCGAATCGGTCTGAGGTGTGTGGTATCTTACGTCATGCAA
CCTGCGGAAGGAGGGGGCGAGAAAGAGGGCGGGGGAAAGCAAGAAAGAGA
CTGGTCGACTGAAGACGTTACCTGGGATATCAGCACGAGCCACAGCGCGG
CCACCTTGAGCGTTGCCCCCGGCGACATCTCCTCCTCCCTCGCCTTCCTA
TCTCTCAAGTCCGACTCGGCTTTCGCCTTCATAGATTCGCGAATCCCCAG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCCGCCCTCCCCGG
CAGCACGACCACCACCCCCCTGCTCCCCCCTGCCAGAGCTCCTAC
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protein sequence of Ec-28_002400.1

>Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=734bp
MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTS
SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAG
PCWQQRDAGRVGHPAIRRGSRSDGHDDDDDDDRDEEEEEDHDNNTESTEI
TVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATATATANS
QQRQQQQYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGGSDDGS
GVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETP
EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHS
SRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGG
QKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAA
GWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRT
CPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPV
KCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTREN
AGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSM
LSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGS
RKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL*
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mRNA from alignment at chr_28:2200135..2206392-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6258bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGTCCTTTTGGTGGCAGGCGTTCTAAAGGCCATGGTGATGTCCTCCTCTA GAGTCGTTTCGCTCAATTCTTCAGGTCAGCAGCTCTATATAAAGAACTCG ACCAAAGACAGACAAAGACGGGGCATGTAATACCAGATTTTGAACGGTTA TCGACTTAACTGCGACGGTCGCGTGTGGACACACATGTCGCACTGGCAGC GGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAACAGTCAATTCCTGGCCG CCAGGGTTTGGAGATGTTGCGAGACCTCTGGCATCGCCTAGACACACCCA AAACAACAATCGATCCCTTGTTTCCTCAACATCGTCGTCAGTCGCAAGTA CCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGTGCTGGGTGGCGGCTTC TCTACGGCCGGATCATGTGCATCATCGTCCCCAAAAAGCATCCAAGGTTC CTGGATCGAGGACGACACAGACCCGAAGGCTGGACCCTGCTGGCAGCAGC GAGATGCCGGTCGTGTGGGCCACCCTGCAATAAGGAGAGGATCAAGATCA GACGGCCACGACGACGACGACGACGACGACCGCGACGAAGAGGAGGAGGA GGACCACGACAACAATACCGAAAGCACCGAGATCACTGTGGTCGGGTGGG GAGATCGCAGCAGCAGACGTAACTCGTCACGGCGTGCCTCTCGAGAAGAG ACGGCAGAATGGAACGATGGCCGACCGCGAAGGTTGTCTAGCAAGGGCGT GGTGCTTGCTACAGCTACCGCCACTGCGAACTCGCAGCAGCGACAGCAGC AGCAGTATGACGGCACAGCAAACGAGACCCACCAAGTGGAAGCTGGTGTG CGCAACAAAGACAAAACTCTCGGAGGAGCGGCAACCAGCATCGGGACTGC CATTGCGTACGTCGGGTGAGAGCTATACGTGCGCAATCAATCTCGTCCCT AGCGGCGTCGATTCCCCGCAACTGAATCCACACCTCATTCGCCGTATTCA ATGATAAAGACAGACTAATATAATAATGGTCAACATGTTTTGTTTGAAAA TATTATGAATGATCATGATTCCATCGCAAAGAAGGAGTCTCCATCGTGTT ACCGCTCAATATTACCAAACGTTTCGAACAACTCTTTGAGGGCTGTCAAG TATTGATCGCTACAACCTTTTTGTTGAGCGATATGTACAGCAAATACATG TTCTCGTGATGGCCGATAATGTTGAACCATTCGTACCCACAGCAGGTGTG GCCTCTGCCGTTCTTACACTTCCTCTTGTTCAACGTTTGCCGACTTCCTT CAGCGCCGTGAGATAGCGGGATTACTCGCCATATAGTCTGCCAAACGAAG GCGCAGCGTCTTGAGTAGAAAATGTACTCGAGAAATAAGCGAAACAAATG TCTGACGTTAACCCCATATATGAAGCAACAACAACCCTGTTGCATCGTGC GGCAAGCTCGTGGTGTCTCTTTCGGCAACCCCTCTCCGCCGGCGCTGCTT GTGTTGCTTATTCCGCAGCAGCGGCAGTGACGACGGATCGGGGGTGTCGA TCAGTGTGGAGCGCGCCACTGAAATCGCCACAATCCCGACGATCACGCCT CCCCCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCGCAACAAGCAT ACCCAGCGTCGCACAACCGTCTCCCGCTGGTGAAACACCCGAAATCGGAA CCCAATCACCGGCGTCACAGTCAGCGGGGGAGGGGGCATCAGCCAAGTCT GGAATGACGCCGACCAGGATGGGTCTGGCCGCATCGGCGCCGAACCTGCC AACCCTCGGCTCGATGAACAACGAAAGCGATCAACATAGCAGCAGAAGCG GCTCTCGATTTCCGCAGGTGTTGCCACGGCAACGGTGGTGTCAGGAAGGG CGGGGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCGCGGCGGGAGG AGGGCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGGCAAAAAGTGA GTGGTGACCGTGTCAGCAGGGTTTCACGAAGACAGTATCATCGCCGAGCC TCCGATACGGCGGGGTCTCTCAACATTTTGCCTCTCTCTCCCGGAGGCCC TGCTCCATTCGCTGTTGACGACATCTGTACGTTCAGGAGCTCCCGTGCTC GATCTTGCCACGCTGTCAAAAAGCACAAGCAGCGTGGTCTGTGACGCGTC AATGTCAACCACTATCATGGTGCTGCAGAAAAAATAAGCAAGGTTCACTA CAACACGTGTTGGTGCTGCACGAAAAAAAACAAGGTTCGCAAAGTACACG GGAGGGCAGCACTCTGGTTGATATACCACCAGCATCTATGTAGTACTTAC CAAAACCTCGATCCCTTCCCCCCTTCCTCAGGTGTTCCACAACTTCGTGT TCCGCCGCAACAAGCGCCGCAAAGACCGGAAACCGTTGCGCGCCACCCTG GCGTCTCTCGACGACAACGCAACGGACTACCAAGCGGCGTATTCGGCGGG AGGCACGAGAGGAAGAAGGGCTGCGGGTTGGAGGTGTGGCGGCCATAGCA GCAGCAGCGGCAGCGGCAGCAGCGTGGAGATGACGGATTCATCGCTGCAT CGTCGGCAAAATTGGGAAACACACCCTTCGGGAGATTGGGACAGGTATGC AGCGCTACGGCAGCGATGACACTGCGACACACCGACCATACATTTGCGGA AAGGTTGTTCAAAATGTAGAGGCACAAGGCTTGATTTTCTAGTAGAAGAA CGACGTGCTGACACGTGGTGCTTTGAGGATACATCAGTGTTTAAGAAGAG GCGCACTTTCCGGTCTACATGAGGCGTCAGCTGGGTTCTTCACCTTTAAC TTCGTAGCTACTCTGATCTGAATCCAGTATCTCCTCTCCCATTGAATGTT CTTCAAGGCAGTGAGACGAGCGCCGTGGTCAACACCAAACCAAAAACTAT GGAATGAAAAAGATCAAATCAGAGAAAAATCCCACCCCACCAATCACACA AAGGCACAAGATCCTAGGACAACTAGTTCAGAGGGACAAAAGCAGGGTAG GACTGGGATAACCCTGTAAGATGCTGTACAGCCCACCGCTCCAGCTCAAA AGCTCAGCCAAGAAACAATCAAGCGCTACAGTGCAGAAGTTCTTTCTCTC TCATTCAAGTGCCTATAGTATCGCGTCGCTCTTGTGTTTCAGCGTTGTTG ATGTCCTGCTTCTATTATTGATCTATTTGTATCTCCTCGTTCCTACTTCA AAGGCGATGGTGACAAGTTGAACCCAGGTTTCGGGTACGCAAGAAATTGC CCCAAGGCTATGCATATCAAGCGAAACGAACCGGGAAACCCGCCTTTGCA TGAGATGTGGGATGCACCGGTGGGGGAGCCGACAAGACCAGGGTAGTTGT GTATCACTTCGATTGCACGTTTCCCGATCGTAAGGGCTGCGTGTTGCCCC TCCCCAACGAATCAATCGTCAACAACAACGAAAAGAAACTGCTACAACAG TCTCAAAACATGCAACACCCCTTCAAACATATCGTGCGCGTGTGTCCCGC ACACAACCATCAACAGACCCGAGCGCCCGGGGCAGATGAATCGAACGTGC CCGCCCCCGCGGACGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAGTTC TTCTGGTTCCGCTCTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCCAGC GGGCCGGCGGTGGCACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTGAAG TGCCAGAGGTGCGGGTCGGGCAGGGTGAAACTCTTTGCGACGACGGTTGT ATCAGCCCGCCGCTCGCCGACCCACCTTCTTCGTCAACCGCCTAGGGGTG CCAGCAGCGACAGTTATTGTGCAAGGGCCGGACATACGCGGGAGAACGCT GGCGGCGGCGGTAGTCGAAACGGCGGCACCCCGAGTTATAGCGTTGCCGG TAGTGGTAGTAGCACGAGCTGCACAGATCGGCTTCGGTTAGCACCGGTGA GCAATCGCCACACGCAGCGGGGAAACGCCCGTAAGGTTACGTCGATGTTG TCTCCACGGCGCAAGAACCTCGCGGGGTTGAGCGACACCGGCCGAATCAG CACGGGAGGGGTATCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACGCGG CGAACCGTCCGCGCGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGCAGG AAGGCATCGGTCAGACCACCGCCCGGCGGCGGTATCATCATCCCAGCACC GAAACCACACCTCAGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCTGAT ACACACAGGCCCACTTGAAGAAAGCCTAGGTGTGTCCGGAGAGGGGCGAA GCTTTCAAGAACTCACCTTGCCCCATGCTACACTGGCTTGTAGCGAATGC TGGCACCTTGGCATTTTGGACTCTGCCGATACAAATCCTTGGTAATATTG CGTGCAAATTGAAGATGTAACGTCAACGAGTATCATGGAGATTGTGACCA GGCAAACATGAACAAAATGAAATGGGATTCCCAGCTGATGCGGCTCGACC TATGCTGGTGCGAACTTCACAAAGGTGTGTTGGTTGTGCCCGTCTTCACG TCTGTACCGCTGCTCCTGGAGTGTGACGCCGAGGTTGCCCTTGCCGGCCG TTCAGAGTTTTCGTTCACATCTTGGTCGCTCCTCACACACTAGGCTGTTC AGAGTTCTTTTCACGTCTTGATCGCTTCTCACACAACACTCGTTTCGAAA ACGTAACATGCGCACGCGAAGCTATCCGCCCTGTCTAATTTGAGGCTCTT GCTGCCTCTCGTCTTAAACAGCAACGTACACCCCAAGGAGACGTGCGTCT CCACTCTTTTGCCGGATCAGCACTGCGCAGAGAAACGACATCTATTTACC ACCGCATATCTCCGCCTCTCGACGTCATATTCGTTCTGTGGCGATTGTAC ACAGGACGATCGGTCTCGTAAAACACGGCCTTTGTGACGCCTCTTCCTCT TGTGCCGATCATTCATGTCCGCCAGAAAGACTGCCACCTCCATGCCGACA ACTAAAACGCACGGGGAATCGCACTCGCACATTACAGTTGACTTAGACGT ACTCGAAATTGAAGTGCGTCGAATGCGAACCTAGAATAATGCTCGCACTG CAAAATCTCGATGCAGCAGAACGGTATGAACAATCGATTGATCCGGCGCT GAACCAACCTGACACACGCGCACCAGACCATGAATCCCAAACCTGCAATC TTCGTCAACCCCTCTCCATGGACTATTGTTCCCTATCACACCACGCACAA CTCTGTCCCGACCTAACACCTGACGAACCGGGTACAGCTCCACTTATTCA CACCGACAGACAAAACCAACGTGCCCCTCTCAGTCTTGCAGAAACGTCGA CGATGCGGGACCCATTGGGTCGTTCCACAACACCACCAGTAGCCACAGCT GCAGATGGGGAGGGGGGGGGGGGGGGAGGGCTGATAATAGGGCATGGAGA GCTGGCGCAGACGCGGGGGGTCGTGCTTCCGAGCGAACCAAGCGCACAGC GAAGGTAGAGAAACCAGATGGCGGGTGCCATGACGAGCTGTGCGTGTGCC GTAGGTTGCATGACGTAAGATACCACATACCCTGGACCCATTTGTGCCGT AGGTTGCATGACGTAAGATACCACACACCCTGGACCCATTTGTGCCGTAG GTTGCATGACGTAAGATACCACATACCCTGGACCCATTTGTGCCGTAGGT TGCATGACGTAAGATACCGCACCCCCTGAACCTTTTTTCACAGCCCGATT ACTCTGCAGCACAACCATGGACTGTGCCGAGAATGGTGGCGTTGGAGCCT TTTTGTCGAGAGTTTTCCGAAAACGCACAATTTTATGTTGGCATCATGTT CTTTGTGGAGTACCCGGGCTTTGGCGAATCGGTCTGAGGTGTGTGGTATC TTACGTCATGCAACCTGCGGAAGGAGGGGGCGAGAAAGAGGGCGGGGGAA AGCAAGAAAGAGACTGGTCGACTGAAGACGTTACCTGGGATATCAGCACG AGCCACAGCGCGGCCACCTTGAGCGTTGCCCCCGGCGACATCTCCTCCTC CCTCGCCTTCCTATCTCTCAAGTCCGACTCGGCTTTCGCCTTCATAGATT CGCGAATCCCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGG CCGCCCTCCCCGGCAGCACGACCACCACCCCCCTGCTCCCCCCTGCCAGA GCTCCTAC
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Coding sequence (CDS) from alignment at chr_28:2200135..2206392-

>Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2202bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGCACTGGCAGCGGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAAC
AGTCAATTCCTGGCCGCCAGGGTTTGGAGATGTTGCGAGACCTCTGGCAT
CGCCTAGACACACCCAAAACAACAATCGATCCCTTGTTTCCTCAACATCG
TCGTCAGTCGCAAGTACCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGT
GCTGGGTGGCGGCTTCTCTACGGCCGGATCATGTGCATCATCGTCCCCAA
AAAGCATCCAAGGTTCCTGGATCGAGGACGACACAGACCCGAAGGCTGGA
CCCTGCTGGCAGCAGCGAGATGCCGGTCGTGTGGGCCACCCTGCAATAAG
GAGAGGATCAAGATCAGACGGCCACGACGACGACGACGACGACGACCGCG
ACGAAGAGGAGGAGGAGGACCACGACAACAATACCGAAAGCACCGAGATC
ACTGTGGTCGGGTGGGGAGATCGCAGCAGCAGACGTAACTCGTCACGGCG
TGCCTCTCGAGAAGAGACGGCAGAATGGAACGATGGCCGACCGCGAAGGT
TGTCTAGCAAGGGCGTGGTGCTTGCTACAGCTACCGCCACTGCGAACTCG
CAGCAGCGACAGCAGCAGCAGTATGACGGCACAGCAAACGAGACCCACCA
AGTGGAAGCTGGTGTGCGCAACAAAGACAAAACTCTCGGAGGAGCGGCAA
CCAGCATCGGGACTGCCATTGCGTACGTCGGCGGCAGTGACGACGGATCG
GGGGTGTCGATCAGTGTGGAGCGCGCCACTGAAATCGCCACAATCCCGAC
GATCACGCCTCCCCCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCG
CAACAAGCATACCCAGCGTCGCACAACCGTCTCCCGCTGGTGAAACACCC
GAAATCGGAACCCAATCACCGGCGTCACAGTCAGCGGGGGAGGGGGCATC
AGCCAAGTCTGGAATGACGCCGACCAGGATGGGTCTGGCCGCATCGGCGC
CGAACCTGCCAACCCTCGGCTCGATGAACAACGAAAGCGATCAACATAGC
AGCAGAAGCGGCTCTCGATTTCCGCAGGTGTTGCCACGGCAACGGTGGTG
TCAGGAAGGGCGGGGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCG
CGGCGGGAGGAGGGCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGG
CAAAAAGTGTTCCACAACTTCGTGTTCCGCCGCAACAAGCGCCGCAAAGA
CCGGAAACCGTTGCGCGCCACCCTGGCGTCTCTCGACGACAACGCAACGG
ACTACCAAGCGGCGTATTCGGCGGGAGGCACGAGAGGAAGAAGGGCTGCG
GGTTGGAGGTGTGGCGGCCATAGCAGCAGCAGCGGCAGCGGCAGCAGCGT
GGAGATGACGGATTCATCGCTGCATCGTCGGCAAAATTGGGAAACACACC
CTTCGGGAGATTGGGACAGACCCGAGCGCCCGGGGCAGATGAATCGAACG
TGCCCGCCCCCGCGGACGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAG
TTCTTCTGGTTCCGCTCTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCC
AGCGGGCCGGCGGTGGCACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTG
AAGTGCCAGAGGTGCGGGTCGGGCAGGGTGAAACTCTTTGCGACGACGGT
TGTATCAGCCCGCCGCTCGCCGACCCACCTTCTTCGTCAACCGCCTAGGG
GTGCCAGCAGCGACAGTTATTGTGCAAGGGCCGGACATACGCGGGAGAAC
GCTGGCGGCGGCGGTAGTCGAAACGGCGGCACCCCGAGTTATAGCGTTGC
CGGTAGTGGTAGTAGCACGAGCTGCACAGATCGGCTTCGGTTAGCACCGG
TGAGCAATCGCCACACGCAGCGGGGAAACGCCCGTAAGGTTACGTCGATG
TTGTCTCCACGGCGCAAGAACCTCGCGGGGTTGAGCGACACCGGCCGAAT
CAGCACGGGAGGGGTATCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACG
CGGCGAACCGTCCGCGCGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGC
AGGAAGGCATCGGTCAGACCACCGCCCGGCGGCGGTATCATCATCCCAGC
ACCGAAACCACACCTCAGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCT
GA
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Synonyms
The feature 'Ec-28_002400.1' has the following synonyms
Synonym
Esi0033_0127
Esi_0033_0127