|
Homology
BLAST of Ec-28_002400.1 vs. uniprot
Match: D7FXN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN3_ECTSI) HSP 1 Score: 1133 bits (2931), Expect = 0.000e+0 Identity = 649/691 (93.92%), Postives = 650/691 (94.07%), Query Frame = 1
Query: 313 SLVSSTSSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVG-GSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 2382
S V S +SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVG GSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR PERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL
Sbjct: 6 SRVVSLNSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXXTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGSGSDDGSGVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETPEIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWR-------------------------------------PERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 659
BLAST of Ec-28_002400.1 vs. uniprot
Match: A0A6H5L7Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q0_9PHAE) HSP 1 Score: 1120 bits (2896), Expect = 0.000e+0 Identity = 650/745 (87.25%), Postives = 666/745 (89.40%), Query Frame = 1
Query: 184 MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTSSSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAGPCWQQRDAGRVGHPAIRRGSRSDGHDDXXXXXXXXXXXXXXXXX-TESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXXXYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVG-GSDDGSGVSISVERATEIATIPTITPPPFQGGQQAA----AAAATSIPSVAQPSPAGETP-----EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHSSRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGGQKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAAGWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGG-SRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 2382
MSHW+RLLLSSL GGE VNSWPPGFGDVARPLASPRHTQN NRSLVSS SSSVASTASRVRKRRPSVLGGGFSTAGSCA+SSP SIQGSWIEDDTDPKAGPCWQQRDA RVGHPA R+GSRSDGH+DXXXXXXXXXXXX TESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXX YDGTANETHQVEAGVRNK KTLGGAATSIGTAIAYVG GSDDGSGVSISVERATEI TIPTITPPPF+G QQAA AAAATSI SVAQPSP ETP ++ +QSPAS+SAGEG SAKS MTPTRMGLAASAPNLPTLGSMNNESDQ SS S SRFPQVLPRQRW QEGRGASVRHRAGLAVAAGGGL GCGVL DG GQKVFHNFVFRRNKRRKDRKPLR TLASLDDNATDYQA SAGG GRRAAG RCGGHSSSS SGSSVEMT+SSL RRQNWE+HPSGDWDRPERPGQMNRT PPPR P DAFSVVSFSSSGSA SP SSPPANGQR GGG CSSGVGRRPVKCQRCGSGRVKLFATTV SARRSPTHLLRQP GASSDS+CARA HTRENAGGGG SRNGG P+Y AGSGS +S TDRLRL PVSNRH Q+ N VTSMLSP RKNLAGLSDTGRI TGG L ELRGGERNAANRPRGL+DGAAVVGSRKASVRPPPGGGIIIPAPKPHL T VSSGGSGL
Sbjct: 1 MSHWERLLLSSLSGGEPVNSWPPGFGDVARPLASPRHTQNKNRSLVSSASSSVASTASRVRKRRPSVLGGGFSTAGSCAASSPNSIQGSWIEDDTDPKAGPCWQQRDADRVGHPATRKGSRSDGHEDXXXXXXXXXXXXEDHDKKTESTEITVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATXXXXXXXXXXXXQQYDGTANETHQVEAGVRNKVKTLGGAATSIGTAIAYVGNGSDDGSGVSISVERATEIVTIPTITPPPFRGWQQAAPNAAAAAATSIHSVAQPSPTRETPGIVTLKVSSQSPASKSAGEGVSAKSAMTPTRMGLAASAPNLPTLGSMNNESDQRSSGSVSRFPQVLPRQRWRQEGRGASVRHRAGLAVAAGGGLEGCGVLQDGRGQKVFHNFVFRRNKRRKDRKPLRDTLASLDDNATDYQAVASAGGISGRRAAGRRCGGHSSSSCSGSSVEMTESSLRRRQNWESHPSGDWDRPERPGQMNRTRPPPRMPRDAFSVVSFSSSGSARSPCSSPPANGQRVGGGPCSSGVGRRPVKCQRCGSGRVKLFATTVASARRSPTHLLRQPHSGASSDSFCARARHTRENAGGGGGSRNGGIPTYCDAGSGSRSS-TDRLRLGPVSNRHKQQRNTHLVTSMLSPWRKNLAGLSDTGRIGTGGELLGELRGGERNAANRPRGLIDGAAVVGSRKASVRPPPGGGIIIPAPKPHLMTRVSSGGSGL 744
BLAST of Ec-28_002400.1 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 6.720e-15 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = -2
Query: 4118 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQV 4252
QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQ+
Sbjct: 69 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQL 113
BLAST of Ec-28_002400.1 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.950e-11 Identity = 49/75 (65.33%), Postives = 51/75 (68.00%), Query Frame = -2
Query: 4118 RSSGRGEQGXXXXXXXXXXXXXXXXXXXXXQLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQV 4342
RSSGRGE G QLGIRE+MKAKAESDLR RKAREEEMS GATLKVAALWLVLISQ+
Sbjct: 265 RSSGRGELGDGGRAAGEGGQQQQ-------QLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQL 332
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 4345 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-28_002400.1 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=734bp MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTS SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAG PCWQQRDAGRVGHPAIRRGSRSDGHDDDDDDDRDEEEEEDHDNNTESTEI TVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATATATANS QQRQQQQYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGGSDDGS GVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETP EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHS SRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGG QKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAA GWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRT CPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPV KCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTREN AGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSM LSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGS RKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL* back to topspliced messenger RNA >Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4345bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
CGTCCTTTTGGTGGCAGGCGTTCTAAAGGCCATGGTGATGTCCTCCTCTA GAGTCGTTTCGCTCAATTCTTCAGGTCAGCAGCTCTATATAAAGAACTCG ACCAAAGACAGACAAAGACGGGGCATGTAATACCAGATTTTGAACGGTTA TCGACTTAACTGCGACGGTCGCGTGTGGACACACATGTCGCACTGGCAGC GGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAACAGTCAATTCCTGGCCG CCAGGGTTTGGAGATGTTGCGAGACCTCTGGCATCGCCTAGACACACCCA AAACAACAATCGATCCCTTGTTTCCTCAACATCGTCGTCAGTCGCAAGTA CCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGTGCTGGGTGGCGGCTTC TCTACGGCCGGATCATGTGCATCATCGTCCCCAAAAAGCATCCAAGGTTC CTGGATCGAGGACGACACAGACCCGAAGGCTGGACCCTGCTGGCAGCAGC GAGATGCCGGTCGTGTGGGCCACCCTGCAATAAGGAGAGGATCAAGATCA GACGGCCACGACGACGACGACGACGACGACCGCGACGAAGAGGAGGAGGA GGACCACGACAACAATACCGAAAGCACCGAGATCACTGTGGTCGGGTGGG GAGATCGCAGCAGCAGACGTAACTCGTCACGGCGTGCCTCTCGAGAAGAG ACGGCAGAATGGAACGATGGCCGACCGCGAAGGTTGTCTAGCAAGGGCGT GGTGCTTGCTACAGCTACCGCCACTGCGAACTCGCAGCAGCGACAGCAGC AGCAGTATGACGGCACAGCAAACGAGACCCACCAAGTGGAAGCTGGTGTG CGCAACAAAGACAAAACTCTCGGAGGAGCGGCAACCAGCATCGGGACTGC CATTGCGTACGTCGGCGGCAGTGACGACGGATCGGGGGTGTCGATCAGTG TGGAGCGCGCCACTGAAATCGCCACAATCCCGACGATCACGCCTCCCCCC TTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCGCAACAAGCATACCCAG CGTCGCACAACCGTCTCCCGCTGGTGAAACACCCGAAATCGGAACCCAAT CACCGGCGTCACAGTCAGCGGGGGAGGGGGCATCAGCCAAGTCTGGAATG ACGCCGACCAGGATGGGTCTGGCCGCATCGGCGCCGAACCTGCCAACCCT CGGCTCGATGAACAACGAAAGCGATCAACATAGCAGCAGAAGCGGCTCTC GATTTCCGCAGGTGTTGCCACGGCAACGGTGGTGTCAGGAAGGGCGGGGT GCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCGCGGCGGGAGGAGGGCT GGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGGCAAAAAGTGTTCCACA ACTTCGTGTTCCGCCGCAACAAGCGCCGCAAAGACCGGAAACCGTTGCGC GCCACCCTGGCGTCTCTCGACGACAACGCAACGGACTACCAAGCGGCGTA TTCGGCGGGAGGCACGAGAGGAAGAAGGGCTGCGGGTTGGAGGTGTGGCG GCCATAGCAGCAGCAGCGGCAGCGGCAGCAGCGTGGAGATGACGGATTCA TCGCTGCATCGTCGGCAAAATTGGGAAACACACCCTTCGGGAGATTGGGA CAGACCCGAGCGCCCGGGGCAGATGAATCGAACGTGCCCGCCCCCGCGGA CGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAGTTCTTCTGGTTCCGCT CTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCCAGCGGGCCGGCGGTGG CACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTGAAGTGCCAGAGGTGCG GGTCGGGCAGGGTGAAACTCTTTGCGACGACGGTTGTATCAGCCCGCCGC TCGCCGACCCACCTTCTTCGTCAACCGCCTAGGGGTGCCAGCAGCGACAG TTATTGTGCAAGGGCCGGACATACGCGGGAGAACGCTGGCGGCGGCGGTA GTCGAAACGGCGGCACCCCGAGTTATAGCGTTGCCGGTAGTGGTAGTAGC ACGAGCTGCACAGATCGGCTTCGGTTAGCACCGGTGAGCAATCGCCACAC GCAGCGGGGAAACGCCCGTAAGGTTACGTCGATGTTGTCTCCACGGCGCA AGAACCTCGCGGGGTTGAGCGACACCGGCCGAATCAGCACGGGAGGGGTA TCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACGCGGCGAACCGTCCGCG CGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGCAGGAAGGCATCGGTCA GACCACCGCCCGGCGGCGGTATCATCATCCCAGCACCGAAACCACACCTC AGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCTGATACACACAGGCCCA CTTGAAGAAAGCCTAGGTGTGTCCGGAGAGGGGCGAAGCTTTCAAGAACT CACCTTGCCCCATGCTACACTGGCTTGTAGCGAATGCTGGCACCTTGGCA TTTTGGACTCTGCCGATACAAATCCTTGGTAATATTGCGTGCAAATTGAA GATGTAACGTCAACGAGTATCATGGAGATTGTGACCAGGCAAACATGAAC AAAATGAAATGGGATTCCCAGCTGATGCGGCTCGACCTATGCTGGTGCGA ACTTCACAAAGGTGTGTTGGTTGTGCCCGTCTTCACGTCTGTACCGCTGC TCCTGGAGTGTGACGCCGAGGTTGCCCTTGCCGGCCGTTCAGAGTTTTCG TTCACATCTTGGTCGCTCCTCACACACTAGGCTGTTCAGAGTTCTTTTCA CGTCTTGATCGCTTCTCACACAACACTCGTTTCGAAAACGTAACATGCGC ACGCGAAGCTATCCGCCCTGTCTAATTTGAGGCTCTTGCTGCCTCTCGTC TTAAACAGCAACGTACACCCCAAGGAGACGTGCGTCTCCACTCTTTTGCC GGATCAGCACTGCGCAGAGAAACGACATCTATTTACCACCGCATATCTCC GCCTCTCGACGTCATATTCGTTCTGTGGCGATTGTACACAGGACGATCGG TCTCGTAAAACACGGCCTTTGTGACGCCTCTTCCTCTTGTGCCGATCATT CATGTCCGCCAGAAAGACTGCCACCTCCATGCCGACAACTAAAACGCACG GGGAATCGCACTCGCACATTACAGTTGACTTAGACGTACTCGAAATTGAA GTGCGTCGAATGCGAACCTAGAATAATGCTCGCACTGCAAAATCTCGATG CAGCAGAACGGTATGAACAATCGATTGATCCGGCGCTGAACCAACCTGAC ACACGCGCACCAGACCATGAATCCCAAACCTGCAATCTTCGTCAACCCCT CTCCATGGACTATTGTTCCCTATCACACCACGCACAACTCTGTCCCGACC TAACACCTGACGAACCGGGTACAGCTCCACTTATTCACACCGACAGACAA AACCAACGTGCCCCTCTCAGTCTTGCAGAAACGTCGACGATGCGGGACCC ATTGGGTCGTTCCACAACACCACCAGTAGCCACAGCTGCAGATGGGGAGG GGGGGGGGGGGGGAGGGCTGATAATAGGGCATGGAGAGCTGGCGCAGACG CGGGGGGTCGTGCTTCCGAGCGAACCAAGCGCACAGCGAAGGTAGAGAAA CCAGATGGCGGGTGCCATGACGAGCTGTGCGTGTGCCGTAGGTTGCATGA CGTAAGATACCACATACCCTGGACCCATTTGTGCCGTAGGTTGCATGACG TAAGATACCACACACCCTGGACCCATTTGTGCCGTAGGTTGCATGACGTA AGATACCACATACCCTGGACCCATTTGTGCCGTAGGTTGCATGACGTAAG ATACCGCACCCCCTGAACCTTTTTTCACAGCCCGATTACTCTGCAGCACA ACCATGGACTGTGCCGAGAATGGTGGCGTTGGAGCCTTTTTGTCGAGAGT TTTCCGAAAACGCACAATTTTATGTTGGCATCATGTTCTTTGTGGAGTAC CCGGGCTTTGGCGAATCGGTCTGAGGTGTGTGGTATCTTACGTCATGCAA CCTGCGGAAGGAGGGGGCGAGAAAGAGGGCGGGGGAAAGCAAGAAAGAGA CTGGTCGACTGAAGACGTTACCTGGGATATCAGCACGAGCCACAGCGCGG CCACCTTGAGCGTTGCCCCCGGCGACATCTCCTCCTCCCTCGCCTTCCTA TCTCTCAAGTCCGACTCGGCTTTCGCCTTCATAGATTCGCGAATCCCCAG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCCGCCCTCCCCGG CAGCACGACCACCACCCCCCTGCTCCCCCCTGCCAGAGCTCCTAC back to topprotein sequence of Ec-28_002400.1 >Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=734bp
MSHWQRLLLSSLGGGETVNSWPPGFGDVARPLASPRHTQNNNRSLVSSTS SSVASTASRVRKRRPSVLGGGFSTAGSCASSSPKSIQGSWIEDDTDPKAG PCWQQRDAGRVGHPAIRRGSRSDGHDDDDDDDRDEEEEEDHDNNTESTEI TVVGWGDRSSRRNSSRRASREETAEWNDGRPRRLSSKGVVLATATATANS QQRQQQQYDGTANETHQVEAGVRNKDKTLGGAATSIGTAIAYVGGSDDGS GVSISVERATEIATIPTITPPPFQGGQQAAAAAATSIPSVAQPSPAGETP EIGTQSPASQSAGEGASAKSGMTPTRMGLAASAPNLPTLGSMNNESDQHS SRSGSRFPQVLPRQRWCQEGRGASVRHRAGLAVAAGGGLGGCGVLPDGGG QKVFHNFVFRRNKRRKDRKPLRATLASLDDNATDYQAAYSAGGTRGRRAA GWRCGGHSSSSGSGSSVEMTDSSLHRRQNWETHPSGDWDRPERPGQMNRT CPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPV KCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTREN AGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSM LSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGS RKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL* back to topmRNA from alignment at chr_28:2200135..2206392- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6258bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR) CGTCCTTTTGGTGGCAGGCGTTCTAAAGGCCATGGTGATGTCCTCCTCTA
GAGTCGTTTCGCTCAATTCTTCAGGTCAGCAGCTCTATATAAAGAACTCG
ACCAAAGACAGACAAAGACGGGGCATGTAATACCAGATTTTGAACGGTTA
TCGACTTAACTGCGACGGTCGCGTGTGGACACACATGTCGCACTGGCAGC
GGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAACAGTCAATTCCTGGCCG
CCAGGGTTTGGAGATGTTGCGAGACCTCTGGCATCGCCTAGACACACCCA
AAACAACAATCGATCCCTTGTTTCCTCAACATCGTCGTCAGTCGCAAGTA
CCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGTGCTGGGTGGCGGCTTC
TCTACGGCCGGATCATGTGCATCATCGTCCCCAAAAAGCATCCAAGGTTC
CTGGATCGAGGACGACACAGACCCGAAGGCTGGACCCTGCTGGCAGCAGC
GAGATGCCGGTCGTGTGGGCCACCCTGCAATAAGGAGAGGATCAAGATCA
GACGGCCACGACGACGACGACGACGACGACCGCGACGAAGAGGAGGAGGA
GGACCACGACAACAATACCGAAAGCACCGAGATCACTGTGGTCGGGTGGG
GAGATCGCAGCAGCAGACGTAACTCGTCACGGCGTGCCTCTCGAGAAGAG
ACGGCAGAATGGAACGATGGCCGACCGCGAAGGTTGTCTAGCAAGGGCGT
GGTGCTTGCTACAGCTACCGCCACTGCGAACTCGCAGCAGCGACAGCAGC
AGCAGTATGACGGCACAGCAAACGAGACCCACCAAGTGGAAGCTGGTGTG
CGCAACAAAGACAAAACTCTCGGAGGAGCGGCAACCAGCATCGGGACTGC
CATTGCGTACGTCGGGTGAGAGCTATACGTGCGCAATCAATCTCGTCCCT
AGCGGCGTCGATTCCCCGCAACTGAATCCACACCTCATTCGCCGTATTCA
ATGATAAAGACAGACTAATATAATAATGGTCAACATGTTTTGTTTGAAAA
TATTATGAATGATCATGATTCCATCGCAAAGAAGGAGTCTCCATCGTGTT
ACCGCTCAATATTACCAAACGTTTCGAACAACTCTTTGAGGGCTGTCAAG
TATTGATCGCTACAACCTTTTTGTTGAGCGATATGTACAGCAAATACATG
TTCTCGTGATGGCCGATAATGTTGAACCATTCGTACCCACAGCAGGTGTG
GCCTCTGCCGTTCTTACACTTCCTCTTGTTCAACGTTTGCCGACTTCCTT
CAGCGCCGTGAGATAGCGGGATTACTCGCCATATAGTCTGCCAAACGAAG
GCGCAGCGTCTTGAGTAGAAAATGTACTCGAGAAATAAGCGAAACAAATG
TCTGACGTTAACCCCATATATGAAGCAACAACAACCCTGTTGCATCGTGC
GGCAAGCTCGTGGTGTCTCTTTCGGCAACCCCTCTCCGCCGGCGCTGCTT
GTGTTGCTTATTCCGCAGCAGCGGCAGTGACGACGGATCGGGGGTGTCGA
TCAGTGTGGAGCGCGCCACTGAAATCGCCACAATCCCGACGATCACGCCT
CCCCCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCGCAACAAGCAT
ACCCAGCGTCGCACAACCGTCTCCCGCTGGTGAAACACCCGAAATCGGAA
CCCAATCACCGGCGTCACAGTCAGCGGGGGAGGGGGCATCAGCCAAGTCT
GGAATGACGCCGACCAGGATGGGTCTGGCCGCATCGGCGCCGAACCTGCC
AACCCTCGGCTCGATGAACAACGAAAGCGATCAACATAGCAGCAGAAGCG
GCTCTCGATTTCCGCAGGTGTTGCCACGGCAACGGTGGTGTCAGGAAGGG
CGGGGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCGCGGCGGGAGG
AGGGCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGGCAAAAAGTGA
GTGGTGACCGTGTCAGCAGGGTTTCACGAAGACAGTATCATCGCCGAGCC
TCCGATACGGCGGGGTCTCTCAACATTTTGCCTCTCTCTCCCGGAGGCCC
TGCTCCATTCGCTGTTGACGACATCTGTACGTTCAGGAGCTCCCGTGCTC
GATCTTGCCACGCTGTCAAAAAGCACAAGCAGCGTGGTCTGTGACGCGTC
AATGTCAACCACTATCATGGTGCTGCAGAAAAAATAAGCAAGGTTCACTA
CAACACGTGTTGGTGCTGCACGAAAAAAAACAAGGTTCGCAAAGTACACG
GGAGGGCAGCACTCTGGTTGATATACCACCAGCATCTATGTAGTACTTAC
CAAAACCTCGATCCCTTCCCCCCTTCCTCAGGTGTTCCACAACTTCGTGT
TCCGCCGCAACAAGCGCCGCAAAGACCGGAAACCGTTGCGCGCCACCCTG
GCGTCTCTCGACGACAACGCAACGGACTACCAAGCGGCGTATTCGGCGGG
AGGCACGAGAGGAAGAAGGGCTGCGGGTTGGAGGTGTGGCGGCCATAGCA
GCAGCAGCGGCAGCGGCAGCAGCGTGGAGATGACGGATTCATCGCTGCAT
CGTCGGCAAAATTGGGAAACACACCCTTCGGGAGATTGGGACAGGTATGC
AGCGCTACGGCAGCGATGACACTGCGACACACCGACCATACATTTGCGGA
AAGGTTGTTCAAAATGTAGAGGCACAAGGCTTGATTTTCTAGTAGAAGAA
CGACGTGCTGACACGTGGTGCTTTGAGGATACATCAGTGTTTAAGAAGAG
GCGCACTTTCCGGTCTACATGAGGCGTCAGCTGGGTTCTTCACCTTTAAC
TTCGTAGCTACTCTGATCTGAATCCAGTATCTCCTCTCCCATTGAATGTT
CTTCAAGGCAGTGAGACGAGCGCCGTGGTCAACACCAAACCAAAAACTAT
GGAATGAAAAAGATCAAATCAGAGAAAAATCCCACCCCACCAATCACACA
AAGGCACAAGATCCTAGGACAACTAGTTCAGAGGGACAAAAGCAGGGTAG
GACTGGGATAACCCTGTAAGATGCTGTACAGCCCACCGCTCCAGCTCAAA
AGCTCAGCCAAGAAACAATCAAGCGCTACAGTGCAGAAGTTCTTTCTCTC
TCATTCAAGTGCCTATAGTATCGCGTCGCTCTTGTGTTTCAGCGTTGTTG
ATGTCCTGCTTCTATTATTGATCTATTTGTATCTCCTCGTTCCTACTTCA
AAGGCGATGGTGACAAGTTGAACCCAGGTTTCGGGTACGCAAGAAATTGC
CCCAAGGCTATGCATATCAAGCGAAACGAACCGGGAAACCCGCCTTTGCA
TGAGATGTGGGATGCACCGGTGGGGGAGCCGACAAGACCAGGGTAGTTGT
GTATCACTTCGATTGCACGTTTCCCGATCGTAAGGGCTGCGTGTTGCCCC
TCCCCAACGAATCAATCGTCAACAACAACGAAAAGAAACTGCTACAACAG
TCTCAAAACATGCAACACCCCTTCAAACATATCGTGCGCGTGTGTCCCGC
ACACAACCATCAACAGACCCGAGCGCCCGGGGCAGATGAATCGAACGTGC
CCGCCCCCGCGGACGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAGTTC
TTCTGGTTCCGCTCTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCCAGC
GGGCCGGCGGTGGCACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTGAAG
TGCCAGAGGTGCGGGTCGGGCAGGGTGAAACTCTTTGCGACGACGGTTGT
ATCAGCCCGCCGCTCGCCGACCCACCTTCTTCGTCAACCGCCTAGGGGTG
CCAGCAGCGACAGTTATTGTGCAAGGGCCGGACATACGCGGGAGAACGCT
GGCGGCGGCGGTAGTCGAAACGGCGGCACCCCGAGTTATAGCGTTGCCGG
TAGTGGTAGTAGCACGAGCTGCACAGATCGGCTTCGGTTAGCACCGGTGA
GCAATCGCCACACGCAGCGGGGAAACGCCCGTAAGGTTACGTCGATGTTG
TCTCCACGGCGCAAGAACCTCGCGGGGTTGAGCGACACCGGCCGAATCAG
CACGGGAGGGGTATCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACGCGG
CGAACCGTCCGCGCGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGCAGG
AAGGCATCGGTCAGACCACCGCCCGGCGGCGGTATCATCATCCCAGCACC
GAAACCACACCTCAGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCTGAT
ACACACAGGCCCACTTGAAGAAAGCCTAGGTGTGTCCGGAGAGGGGCGAA
GCTTTCAAGAACTCACCTTGCCCCATGCTACACTGGCTTGTAGCGAATGC
TGGCACCTTGGCATTTTGGACTCTGCCGATACAAATCCTTGGTAATATTG
CGTGCAAATTGAAGATGTAACGTCAACGAGTATCATGGAGATTGTGACCA
GGCAAACATGAACAAAATGAAATGGGATTCCCAGCTGATGCGGCTCGACC
TATGCTGGTGCGAACTTCACAAAGGTGTGTTGGTTGTGCCCGTCTTCACG
TCTGTACCGCTGCTCCTGGAGTGTGACGCCGAGGTTGCCCTTGCCGGCCG
TTCAGAGTTTTCGTTCACATCTTGGTCGCTCCTCACACACTAGGCTGTTC
AGAGTTCTTTTCACGTCTTGATCGCTTCTCACACAACACTCGTTTCGAAA
ACGTAACATGCGCACGCGAAGCTATCCGCCCTGTCTAATTTGAGGCTCTT
GCTGCCTCTCGTCTTAAACAGCAACGTACACCCCAAGGAGACGTGCGTCT
CCACTCTTTTGCCGGATCAGCACTGCGCAGAGAAACGACATCTATTTACC
ACCGCATATCTCCGCCTCTCGACGTCATATTCGTTCTGTGGCGATTGTAC
ACAGGACGATCGGTCTCGTAAAACACGGCCTTTGTGACGCCTCTTCCTCT
TGTGCCGATCATTCATGTCCGCCAGAAAGACTGCCACCTCCATGCCGACA
ACTAAAACGCACGGGGAATCGCACTCGCACATTACAGTTGACTTAGACGT
ACTCGAAATTGAAGTGCGTCGAATGCGAACCTAGAATAATGCTCGCACTG
CAAAATCTCGATGCAGCAGAACGGTATGAACAATCGATTGATCCGGCGCT
GAACCAACCTGACACACGCGCACCAGACCATGAATCCCAAACCTGCAATC
TTCGTCAACCCCTCTCCATGGACTATTGTTCCCTATCACACCACGCACAA
CTCTGTCCCGACCTAACACCTGACGAACCGGGTACAGCTCCACTTATTCA
CACCGACAGACAAAACCAACGTGCCCCTCTCAGTCTTGCAGAAACGTCGA
CGATGCGGGACCCATTGGGTCGTTCCACAACACCACCAGTAGCCACAGCT
GCAGATGGGGAGGGGGGGGGGGGGGGAGGGCTGATAATAGGGCATGGAGA
GCTGGCGCAGACGCGGGGGGTCGTGCTTCCGAGCGAACCAAGCGCACAGC
GAAGGTAGAGAAACCAGATGGCGGGTGCCATGACGAGCTGTGCGTGTGCC
GTAGGTTGCATGACGTAAGATACCACATACCCTGGACCCATTTGTGCCGT
AGGTTGCATGACGTAAGATACCACACACCCTGGACCCATTTGTGCCGTAG
GTTGCATGACGTAAGATACCACATACCCTGGACCCATTTGTGCCGTAGGT
TGCATGACGTAAGATACCGCACCCCCTGAACCTTTTTTCACAGCCCGATT
ACTCTGCAGCACAACCATGGACTGTGCCGAGAATGGTGGCGTTGGAGCCT
TTTTGTCGAGAGTTTTCCGAAAACGCACAATTTTATGTTGGCATCATGTT
CTTTGTGGAGTACCCGGGCTTTGGCGAATCGGTCTGAGGTGTGTGGTATC
TTACGTCATGCAACCTGCGGAAGGAGGGGGCGAGAAAGAGGGCGGGGGAA
AGCAAGAAAGAGACTGGTCGACTGAAGACGTTACCTGGGATATCAGCACG
AGCCACAGCGCGGCCACCTTGAGCGTTGCCCCCGGCGACATCTCCTCCTC
CCTCGCCTTCCTATCTCTCAAGTCCGACTCGGCTTTCGCCTTCATAGATT
CGCGAATCCCCAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGG
CCGCCCTCCCCGGCAGCACGACCACCACCCCCCTGCTCCCCCCTGCCAGA
GCTCCTAC back to topCoding sequence (CDS) from alignment at chr_28:2200135..2206392- >Ec-28_002400.1 ID=Ec-28_002400.1|Name=Ec-28_002400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2202bp|location=Sequence derived from alignment at chr_28:2200135..2206392- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGTCGCACTGGCAGCGGCTCCTCCTGTCTTCCTTGGGGGGGGGTGAAAC AGTCAATTCCTGGCCGCCAGGGTTTGGAGATGTTGCGAGACCTCTGGCAT CGCCTAGACACACCCAAAACAACAATCGATCCCTTGTTTCCTCAACATCG TCGTCAGTCGCAAGTACCGCCTCTAGGGTGAGGAAGCGACGACCGTCGGT GCTGGGTGGCGGCTTCTCTACGGCCGGATCATGTGCATCATCGTCCCCAA AAAGCATCCAAGGTTCCTGGATCGAGGACGACACAGACCCGAAGGCTGGA CCCTGCTGGCAGCAGCGAGATGCCGGTCGTGTGGGCCACCCTGCAATAAG GAGAGGATCAAGATCAGACGGCCACGACGACGACGACGACGACGACCGCG ACGAAGAGGAGGAGGAGGACCACGACAACAATACCGAAAGCACCGAGATC ACTGTGGTCGGGTGGGGAGATCGCAGCAGCAGACGTAACTCGTCACGGCG TGCCTCTCGAGAAGAGACGGCAGAATGGAACGATGGCCGACCGCGAAGGT TGTCTAGCAAGGGCGTGGTGCTTGCTACAGCTACCGCCACTGCGAACTCG CAGCAGCGACAGCAGCAGCAGTATGACGGCACAGCAAACGAGACCCACCA AGTGGAAGCTGGTGTGCGCAACAAAGACAAAACTCTCGGAGGAGCGGCAA CCAGCATCGGGACTGCCATTGCGTACGTCGGCGGCAGTGACGACGGATCG GGGGTGTCGATCAGTGTGGAGCGCGCCACTGAAATCGCCACAATCCCGAC GATCACGCCTCCCCCCTTCCAGGGAGGGCAACAAGCCGCCGCCGCCGCCG CAACAAGCATACCCAGCGTCGCACAACCGTCTCCCGCTGGTGAAACACCC GAAATCGGAACCCAATCACCGGCGTCACAGTCAGCGGGGGAGGGGGCATC AGCCAAGTCTGGAATGACGCCGACCAGGATGGGTCTGGCCGCATCGGCGC CGAACCTGCCAACCCTCGGCTCGATGAACAACGAAAGCGATCAACATAGC AGCAGAAGCGGCTCTCGATTTCCGCAGGTGTTGCCACGGCAACGGTGGTG TCAGGAAGGGCGGGGTGCTTCTGTGAGACACCGGGCAGGGCTTGCGGTCG CGGCGGGAGGAGGGCTGGGGGGATGCGGCGTCCTCCCGGACGGAGGGGGG CAAAAAGTGTTCCACAACTTCGTGTTCCGCCGCAACAAGCGCCGCAAAGA CCGGAAACCGTTGCGCGCCACCCTGGCGTCTCTCGACGACAACGCAACGG ACTACCAAGCGGCGTATTCGGCGGGAGGCACGAGAGGAAGAAGGGCTGCG GGTTGGAGGTGTGGCGGCCATAGCAGCAGCAGCGGCAGCGGCAGCAGCGT GGAGATGACGGATTCATCGCTGCATCGTCGGCAAAATTGGGAAACACACC CTTCGGGAGATTGGGACAGACCCGAGCGCCCGGGGCAGATGAATCGAACG TGCCCGCCCCCGCGGACGCCGAGCGACGCCTTCTCCGTCGTAAGCTTCAG TTCTTCTGGTTCCGCTCTCTCTCCCCGTTCTTCGCCGCCGGCGAATGGCC AGCGGGCCGGCGGTGGCACGTGCTCCAGCGGTGTAGGGAGGAGGCCTGTG AAGTGCCAGAGGTGCGGGTCGGGCAGGGTGAAACTCTTTGCGACGACGGT TGTATCAGCCCGCCGCTCGCCGACCCACCTTCTTCGTCAACCGCCTAGGG GTGCCAGCAGCGACAGTTATTGTGCAAGGGCCGGACATACGCGGGAGAAC GCTGGCGGCGGCGGTAGTCGAAACGGCGGCACCCCGAGTTATAGCGTTGC CGGTAGTGGTAGTAGCACGAGCTGCACAGATCGGCTTCGGTTAGCACCGG TGAGCAATCGCCACACGCAGCGGGGAAACGCCCGTAAGGTTACGTCGATG TTGTCTCCACGGCGCAAGAACCTCGCGGGGTTGAGCGACACCGGCCGAAT CAGCACGGGAGGGGTATCACTTGCGGAGCTCCGCGGAGGCGAGAGGAACG CGGCGAACCGTCCGCGCGGGTTGATGGATGGTGCGGCGGTGGTGGGCAGC AGGAAGGCATCGGTCAGACCACCGCCCGGCGGCGGTATCATCATCCCAGC ACCGAAACCACACCTCAGGACGCCGGTCTCGAGCGGAGGATCAGGGCTCT GA back to top
Synonyms
The feature 'Ec-28_002400.1' has the following synonyms
Synonym |
Esi0033_0127 |
Esi_0033_0127 |
|