Ec-28_002390.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-28_002390.1
Unique Name	Ec-28_002390.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	355

Homology

[Close]

BLAST of Ec-28_002390.1 vs. uniprot
Match: D7FXN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN3_ECTSI)

HSP 1 Score: 468 bits (1205), Expect = 3.770e-144
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = -2

Query: 3374 RPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 4105
            RPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL
Sbjct:  416 RPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGGSRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 659

[Close]

BLAST of Ec-28_002390.1 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 439 bits (1128), Expect = 1.440e-137
Identity = 276/368 (75.00%), Postives = 282/368 (76.63%), Query Frame = 3

Query: 1227 MLTRLMPLLAFLDAASSWSATATAATTVAFSSPPRMLLDFSTLTSSRRHGGQKHQIEPDNSSSSSR-------------ATFASREXXXXXXRAGERSSATRMSSAPSGEGRREGNRVVGSIARGGGVVAFVTAACSAFPSCSSAVAAAAT-IVGEAGGSEMGARVDPAATTSFAAVVVAFAFLQARIRTAVRARTARRDYEVLFKGMKAKQLAGQADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEPGTAAREAQQGRSSGRGEQGXXXXXXXXXXXXXXXXXXXXXQLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 2288
            MLTRLM LLAFL  ASSWSATATAAT                         QKHQI+PDNSSSSSR             ATFASR        AGERSSATRMSSAPSGEGRREGNRVVGSIARGG VVAFV AACSAFPSCS         IVGEAGGSEMGARVDPAAT SFAAVVVAFAFLQ+RIRTAVRARTARR+YEVLFKGMKAKQLAGQADE+EVKLVEERMSQLL+EEQEAR VDIFGIPFNLVIPDGGAGGEPGTAAREAQQGRSSGRGE G                     QLGIRE+MKAKAESDLR RKAREEEMS GATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD
Sbjct:    1 MLTRLMLLLAFLHTASSWSATATAATXXXXXXXXXXXXXXXXXXXXXXXXXQKHQIDPDNSSSSSRQPWTPMRPLTRGRATFASR--------AGERSSATRMSSAPSGEGRREGNRVVGSIARGGDVVAFVAAACSAFPSCSXXXXXXXXXIVGEAGGSEMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGMKAKQLAGQADEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGAGGEPGTAAREAQQGRSSGRGELGDGGRAAGEGGQQQQ-------QLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 353

[Close]

BLAST of Ec-28_002390.1 vs. uniprot
Match: A0A6H5L7Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q0_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 1.580e-111
Identity = 210/246 (85.37%), Postives = 216/246 (87.80%), Query Frame = -2

Query: 3374 NRPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGRRPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGGGG-SRNGGTPSYSVAGSGSSTSCTDRLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAELRGGERNAANRPRGLMDGAAVVGSRKASVRPPPGGGIIIPAPKPHLRTPVSSGGSGL 4108
            +RPERPGQMNRT PPPR P DAFSVVSFSSSGSA SP SSPPANGQR GGG CSSGVGRRPVKCQRCGSGRVKLFATTV SARRSPTHLLRQP  GASSDS+CARA HTRENAGGGG SRNGG P+Y  AGSGS +S TDRLRL PVSNRH Q+ N   VTSMLSP RKNLAGLSDTGRI TGG  L ELRGGERNAANRPRGL+DGAAVVGSRKASVRPPPGGGIIIPAPKPHL T VSSGGSGL
Sbjct:  500 DRPERPGQMNRTRPPPRMPRDAFSVVSFSSSGSARSPCSSPPANGQRVGGGPCSSGVGRRPVKCQRCGSGRVKLFATTVASARRSPTHLLRQPHSGASSDSFCARARHTRENAGGGGGSRNGGIPTYCDAGSGSRSS-TDRLRLGPVSNRHKQQRNTHLVTSMLSPWRKNLAGLSDTGRIGTGGELLGELRGGERNAANRPRGLIDGAAVVGSRKASVRPPPGGGIIIPAPKPHLMTRVSSGGSGL 744

[Close]

BLAST of Ec-28_002390.1 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.820e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 3

Query: 2091 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 2288
            QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD
Sbjct:   69 QLGIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 134

The following BLAST results are available for this feature:

BLAST of Ec-28_002390.1 vs. uniprot

BLAST of Ec-28_002390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FXN3_ECTSI	3.770e-144	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L6Y5_9PHAE	1.440e-137	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7Q0_9PHAE	1.580e-111	85.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXN2_ECTSI	3.820e-31	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:2194783..2203627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	4906
Hectar predicted targeting category	chloroplast
Gene id	Ec-28_002390.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_002390	Ec-28_002390	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_28 2194783..2203627 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002390.1	Ec-28_002390.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_28 2196010..2201013 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002390.1.1	Ec-28_002390.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2194783..2196522 +
Ec-28_002390.1.2	Ec-28_002390.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2196822..2196914 +
Ec-28_002390.1.3	Ec-28_002390.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2197690..2197734 +
Ec-28_002390.1.4	Ec-28_002390.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2199332..2199451 +
Ec-28_002390.1.5	Ec-28_002390.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2200134..2200358 +
Ec-28_002390.1.6	Ec-28_002390.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2200945..2203627 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002390	5UTR:Ec-28_002390.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_28 2194783..2196009 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002390.1	CDS:Ec-28_002390.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_28 2196010..2196522 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_002390	3UTR:Ec-28_002390.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_28 2201014..2203627 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_28:2194783..2203627+
coding sequence from alignment at chr_28:2194783..2203627+

mRNA sequence

>Ec-28_002390.1 ID=Ec-28_002390.1|Name=Ec-28_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=355bp
MLTRLMPLLAFLDAASSWSATATAATTVAFSSPPRMLLDFSTLTSSRRHG
GQKHQIEPDNSSSSSRATFASRERATFASRAGERSSATRMSSAPSGEGRR
EGNRVVGSIARGGGVVAFVTAACSAFPSCSSAVAAAATIVGEAGGSEMGA
RVDPAATTSFAAVVVAFAFLQARIRTAVRARTARRDYEVLFKGMKAKQLA
GQADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEPGT
AAREAQQGRSSGRGEQGGGGRAAGEGGQQQQQQQQQQQQLGIRESMKAKA
ESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASST
FLQD*

spliced messenger RNA

>Ec-28_002390.1 ID=Ec-28_002390.1|Name=Ec-28_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4906bp|location=Sequence derived from alignment at chr_28:2194783..2203627+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGCAGACGACAGAGTCCAATGATAAGAGAAAAAAAAAATAGAGGAAAACA
TAAAAATGCATTTGCGGTAGAATACAAGTAGTACATCAGGTGTGCATTTG
GAAGGCGACGATAACATACCGGTGGATTGGACTATACATAGATCAGCTAT
GCATACTCACATACATAGTCTAGAGTGCCAGTTTCGCGCGTTTTGGAGTA
CGTGCATTGATTGAATATTATCACCGAGAATCTTTTGACGGTGTCGTCTT
TGGGAGCTTGTCAGCGTTCACAAGTCGAGCAACATCCGCGAAAACCCCGC
CAGGAAGCAAAGCGACGCCGAGAGGGAACACCAGCAATGACCTCATGATA
AAACTTGGTGCCTCAGTGCAAAGACTATGACTATAAATTATTATAGTCAT
AGTCTTTGCCTCAGTGTATTGTACTTGCAGTGGTGAGTGGATTCAAATTT
CGAAATTCATTTCGATTTATGTTTTGCAATCACCTGTTCGACGTAAATAC
CCCACTCGAAGGGATGCACAAGTAGTGAACGATGAAAAACACCTCCCTGC
GTTATTGTTTTATTATGGAGTATACAGGTGAGGAAGACACCGACTGAAGG
ATCGGTGATACCTCATTCCTTTTGGTTGTTCGAACACTTGTTGTGTGGAA
CAACGCCGGTCGCCGAGGTATGCTCTGTTGCTGCTGCTGTGTACAAAATA
GTCTACTGCTGTAGATAGGTCCCCGTGACTCTGAAGATACACGAGTGGCG
AGGACGGCCCTTGTCTTCGGGACATTCCCCGTTGTCTCTTCACGCACGCA
CGGGCTAGGACGAGGTAGTGGCAGCAAGGAGCGCGGCGCAACGAAAACAA
GGTCACTGGTAAAAAGTGCGTGTGTAATCATGTGATCATGTGTGATGTGT
CATGGTGTCGCGTGCCTCGTGCCAGTAGCGGTGAACCAGCAAGTTGCGAT
CTGCGCAACCCCCCCTTCCCAATTGCGTTGTTGCGCCGCGTCTGCAGCAT
GATGACGACGGGTTGCACTGCTGTCCTGCCCTCCTGTTTCCTCGCTGCCC
CCCCTGGCGTCGTAGCCCGTGTGTGTGAAAAGCAAGGGAATCTCACAGAG
GCAAGAACCGAGCCGCCTGTTCACTCTATCTTGAGAGTGACGGGGGCTCT
CTGCACACTCGTTGTTGACGAAGCGCCCAGCATCGTCAGATCGTTTTTTG
TGAATTCAAATTCGGCAAACGACGACAATGTTGACGAGGTTGATGCCGTT
GCTCGCGTTCCTCGACGCCGCTTCTTCCTGGAGCGCGACGGCTACCGCAG
CCACCACCGTTGCCTTCAGCAGCCCCCCCCGGATGTTGCTCGACTTCTCA
ACGCTGACAAGCTCTCGAAGACACGGCGGTCAGAAACATCAAATCGAACC
TGACAACAGCAGCAGCAGTAGCAGGGCAACATTCGCGTCTCGAGAGAGGG
CAACATTCGCGTCGCGCGCGGGGGAGCGAAGCTCAGCGACGCGCATGAGC
AGTGCCCCTTCAGGCGAAGGACGTCGTGAGGGAAATCGCGTCGTGGGCAG
CATCGCTCGGGGTGGCGGCGTGGTAGCCTTCGTGACGGCGGCGTGCTCAG
CTTTCCCCAGTTGCTCCTCCGCAGTAGCGGCAGCAGCAACCATCGTTGGG
GAAGCGGGCGGGTCGGAGATGGGTGCGAGGGTAGACCCCGCTGCTACGAC
CTCTTTCGCTGCTGTTGTGGTGGCCTTCGCGTTTCTCCAGGCGCGGATTC
GAACCGCTGTAAGAGCGCGAACGGCACGGAGGGACTACGAGGTTCTCTTC
AAAGGGATGAAAGCAAAGCAACTCGCCGGACAGGCGGACGAGGAGGAAGT
GAAGCTGGTGGAGGAACGGATGTCGCAGCTCCTTCGGGAGGAACAAGAGG
CGAGAATGGTGGACATCTTCGGCATCCCGTTCAACTTGGTTATCCCCGAC
GGCGGGGCGGGAGGGGAGCCGGGGACAGCCGCCAGGGAAGCGCAACAGGG
TAGGAGCTCTGGCAGGGGGGAGCAGGGGGGTGGTGGTCGTGCTGCCGGGG
AGGGCGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGGG
ATTCGCGAATCTATGAAGGCGAAAGCCGAGTCGGACTTGAGAGATAGGAA
GGCGAGGGAGGAGGAGATGTCGCCGGGGGCAACGCTCAAGGTGGCCGCGC
TGTGGCTCGTGCTGATATCCCAGCTGTGGCTACTGGTGGTGTTGTGGAAC
GACCCAATGGGTCCCGCATCGTCGACGTTTCTGCAAGACTGAGAGGGGCA
CGTTGGTTTTGTCTGTCGGTGTGAATAAGTGGAGCTGTACCCGGTTCGTC
AGGTGTTAGGTCGGGACAGAGTTGTGCGTGGTGTGATAGGGAACAATAGT
CCATGGAGAGGGGTTGACGAAGATTGCAGGTTTGGGATTCATGGTCTGGT
GCGCGTGTGTCAGGTTGGTTCAGCGCCGGATCAATCGATTGTTCATACCG
TTCTGCTGCATCGAGATTTTGCAGTGCGAGCATTATTCTAGGTTCGCATT
CGACGCACTTCAATTTCGAGTACGTCTAAGTCAACTGTAATGTGCGAGTG
CGATTCCCCGTGCGTTTTAGTTGTCGGCATGGAGGTGGCAGTCTTTCTGG
CGGACATGAATGATCGGCACAAGAGGAAGAGGCGTCACAAAGGCCGTGTT
TTACGAGACCGATCGTCCTGTGTACAATCGCCACAGAACGAATATGACGT
CGAGAGGCGGAGATATGCGGTGGTAAATAGATGTCGTTTCTCTGCGCAGT
GCTGATCCGGCAAAAGAGTGGAGACGCACGTCTCCTTGGGGTGTACGTTG
CTGTTTAAGACGAGAGGCAGCAAGAGCCTCAAATTAGACAGGGCGGATAG
CTTCGCGTGCGCATGTTACGTTTTCGAAACGAGTGTTGTGTGAGAAGCGA
TCAAGACGTGAAAAGAACTCTGAACAGCCTAGTGTGTGAGGAGCGACCAA
GATGTGAACGAAAACTCTGAACGGCCGGCAAGGGCAACCTCGGCGTCACA
CTCCAGGAGCAGCGGTACAGACGTGAAGACGGGCACAACCAACACACCTT
TGTGAAGTTCGCACCAGCATAGGTCGAGCCGCATCAGCTGGGAATCCCAT
TTCATTTTGTTCATGTTTGCCTGGTCACAATCTCCATGATACTCGTTGAC
GTTACATCTTCAATTTGCACGCAATATTACCAAGGATTTGTATCGGCAGA
GTCCAAAATGCCAAGGTGCCAGCATTCGCTACAAGCCAGTGTAGCATGGG
GCAAGGTGAGTTCTTGAAAGCTTCGCCCCTCTCCGGACACACCTAGGCTT
TCTTCAAGTGGGCCTGTGTGTATCAGAGCCCTGATCCTCCGCTCGAGACC
GGCGTCCTGAGGTGTGGTTTCGGTGCTGGGATGATGATACCGCCGCCGGG
CGGTGGTCTGACCGATGCCTTCCTGCTGCCCACCACCGCCGCACCATCCA
TCAACCCGCGCGGACGGTTCGCCGCGTTCCTCTCGCCTCCGCGGAGCTCC
GCAAGTGATACCCCTCCCGTGCTGATTCGGCCGGTGTCGCTCAACCCCGC
GAGGTTCTTGCGCCGTGGAGACAACATCGACGTAACCTTACGGGCGTTTC
CCCGCTGCGTGTGGCGATTGCTCACCGGTGCTAACCGAAGCCGATCTGTG
CAGCTCGTGCTACTACCACTACCGGCAACGCTATAACTCGGGGTGCCGCC
GTTTCGACTACCGCCGCCGCCAGCGTTCTCCCGCGTATGTCCGGCCCTTG
CACAATAACTGTCGCTGCTGGCACCCCTAGGCGGTTGACGAAGAAGGTGG
GTCGGCGAGCGGCGGGCTGATACAACCGTCGTCGCAAAGAGTTTCACCCT
GCCCGACCCGCACCTCTGGCACTTCACAGGCCTCCTCCCTACACCGCTGG
AGCACGTGCCACCGCCGGCCCGCTGGCCATTCGCCGGCGGCGAAGAACGG
GGAGAGAGAGCGGAACCAGAAGAACTGAAGCTTACGACGGAGAAGGCGTC
GCTCGGCGTCCGCGGGGGCGGGCACGTTCGATTCATCTGCCCCGGGCGCT
CGGGTCTGTTGATGGTTGTGTGCGGGACACACGCGCACGATATGTTTGAA
GGGGTGTTGCATGTTTTGAGACTGTTGTAGCAGTTTCTTTTCGTTGTTGT
TGACGATTGATTCGTTGGGGAGGGGCAACACGCAGCCCTTACGATCGGGA
AACGTGCAATCGAAGTGATACACAACTACCCTGGTCTTGTCGGCTCCCCC
ACCGGTGCATCCCACATCTCATGCAAAGGCGGGTTTCCCGGTTCGTTTCG
CTTGATATGCATAGCCTTGGGGCAATTTCTTGCGTACCCGAAACCTGGGT
TCAACTTGTCACCATCGCCTTTGAAGTAGGAACGAGGAGATACAAATAGA
TCAATAATAGAAGCAGGACATCAACAACGCTGAAACACAAGAGCGACGCG
ATACTATAGGCACTTGAATGAGAGAGAAAGAACTTCTGCACTGTAGCGCT
TGATTGTTTCTTGGCTGAGCTTTTGAGCTGGAGCGGTGGGCTGTACAGCA
TCTTACAGGGTTATCCCAGTCCTACCCTGCTTTTGTCCCTCTGAACTAGT
TGTCCTAGGATCTTGTGCCTTTGTGTGATTGGTGGGGTGGGATTTTTCTC
TGATTTGATCTTTTTCATTCCATAGTTTTTGGTTTGGTGTTGACCACGGC
GCTCGTCTCACTGCCTTGAAGAACATTCAATGGGAGAGGAGATACTGGAT
TCAGATCAGAGTAGCTACGAAGTTAAAGGTGAAGAACCCAGCTGACGCCT
CATGTAGACCGGAAAGTGCGCCTCTTCTTAAACACTGATGTATCCTCAAA
GCACCA

protein sequence of Ec-28_002390.1

>Ec-28_002390.1 ID=Ec-28_002390.1|Name=Ec-28_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=355bp
MLTRLMPLLAFLDAASSWSATATAATTVAFSSPPRMLLDFSTLTSSRRHG
GQKHQIEPDNSSSSSRATFASRERATFASRAGERSSATRMSSAPSGEGRR
EGNRVVGSIARGGGVVAFVTAACSAFPSCSSAVAAAATIVGEAGGSEMGA
RVDPAATTSFAAVVVAFAFLQARIRTAVRARTARRDYEVLFKGMKAKQLA
GQADEEEVKLVEERMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEPGT
AAREAQQGRSSGRGEQGGGGRAAGEGGQQQQQQQQQQQQLGIRESMKAKA
ESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASST
FLQD*

mRNA from alignment at chr_28:2194783..2203627+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-28_002390.1 ID=Ec-28_002390.1|Name=Ec-28_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8845bp|location=Sequence derived from alignment at chr_28:2194783..2203627+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGCAGACGACAGAGTCCAATGATAAGAGAAAAAAAAAATAGAGGAAAACA
TAAAAATGCATTTGCGGTAGAATACAAGTAGTACATCAGGTGTGCATTTG
GAAGGCGACGATAACATACCGGTGGATTGGACTATACATAGATCAGCTAT
GCATACTCACATACATAGTCTAGAGTGCCAGTTTCGCGCGTTTTGGAGTA
CGTGCATTGATTGAATATTATCACCGAGAATCTTTTGACGGTGTCGTCTT
TGGGAGCTTGTCAGCGTTCACAAGTCGAGCAACATCCGCGAAAACCCCGC
CAGGAAGCAAAGCGACGCCGAGAGGGAACACCAGCAATGACCTCATGATA
AAACTTGGTGCCTCAGTGCAAAGACTATGACTATAAATTATTATAGTCAT
AGTCTTTGCCTCAGTGTATTGTACTTGCAGTGGTGAGTGGATTCAAATTT
CGAAATTCATTTCGATTTATGTTTTGCAATCACCTGTTCGACGTAAATAC
CCCACTCGAAGGGATGCACAAGTAGTGAACGATGAAAAACACCTCCCTGC
GTTATTGTTTTATTATGGAGTATACAGGTGAGGAAGACACCGACTGAAGG
ATCGGTGATACCTCATTCCTTTTGGTTGTTCGAACACTTGTTGTGTGGAA
CAACGCCGGTCGCCGAGGTATGCTCTGTTGCTGCTGCTGTGTACAAAATA
GTCTACTGCTGTAGATAGGTCCCCGTGACTCTGAAGATACACGAGTGGCG
AGGACGGCCCTTGTCTTCGGGACATTCCCCGTTGTCTCTTCACGCACGCA
CGGGCTAGGACGAGGTAGTGGCAGCAAGGAGCGCGGCGCAACGAAAACAA
GGTCACTGGTAAAAAGTGCGTGTGTAATCATGTGATCATGTGTGATGTGT
CATGGTGTCGCGTGCCTCGTGCCAGTAGCGGTGAACCAGCAAGTTGCGAT
CTGCGCAACCCCCCCTTCCCAATTGCGTTGTTGCGCCGCGTCTGCAGCAT
GATGACGACGGGTTGCACTGCTGTCCTGCCCTCCTGTTTCCTCGCTGCCC
CCCCTGGCGTCGTAGCCCGTGTGTGTGAAAAGCAAGGGAATCTCACAGAG
GCAAGAACCGAGCCGCCTGTTCACTCTATCTTGAGAGTGACGGGGGCTCT
CTGCACACTCGTTGTTGACGAAGCGCCCAGCATCGTCAGATCGTTTTTTG
TGAATTCAAATTCGGCAAACGACGACAATGTTGACGAGGTTGATGCCGTT
GCTCGCGTTCCTCGACGCCGCTTCTTCCTGGAGCGCGACGGCTACCGCAG
CCACCACCGTTGCCTTCAGCAGCCCCCCCCGGATGTTGCTCGACTTCTCA
ACGCTGACAAGCTCTCGAAGACACGGCGGTCAGAAACATCAAATCGAACC
TGACAACAGCAGCAGCAGTAGCAGGGCAACATTCGCGTCTCGAGAGAGGG
CAACATTCGCGTCGCGCGCGGGGGAGCGAAGCTCAGCGACGCGCATGAGC
AGTGCCCCTTCAGGCGAAGGACGTCGTGAGGGAAATCGCGTCGTGGGCAG
CATCGCTCGGGGTGGCGGCGTGGTAGCCTTCGTGACGGCGGCGTGCTCAG
CTTTCCCCAGTTGCTCCTCCGCAGTAGCGGCAGCAGCAACCATCGTTGGG
GAAGCGGGCGGGTCGGAGATGGGTGCGAGGGTAGACCCCGCTGCTACGAC
CTCTTTCGCTGCTGTTGTGGTGGCCTTCGCGTTTCTCCAGGTAAAATTTG
TTCCGTCCAAATCCCTGACACTCGAGACATGTACTGTATGTAGATACATC
AGGAATAGAGATACATATTACCCTCCTCGGGAAGTGCAAGTGACGGGGCT
CACGAACCCCACGACTGGCTTTTTCAGAGGCCAAATCAACCATTAGACTG
GTCAGCTACAGTAGTTTTGGGTCGTACAGCAGTAGTCTAATGGTTTGATT
TCGGCTTCTACGCATATGTGTATTGGAAACCTTGATCTCGGAGTTCAACG
AGAGCCCTGACTCGATGCTTGCGTGTGCTTCCCATCCAGGCGCGGATTCG
AACCGCTGTAAGAGCGCGAACGGCACGGAGGGACTACGAGGTTCTCTTCA
AAGGGATGAAAGCAAAGCAACTCGCCGGACAGGTAAGCGTGCAATCATAA
CAAACGAAAACGAAATTCGTGTGTAAGCATGCTTCTGAAAGGGCAGGAGC
GAACGTAGCACAAACGTTCCGCCCGACACTTCCACTTCAGACAGTAATCG
TTCGGGGTTGGATGCAAGTACCCTTGCGAGATGTTCCCGGTCAGTACAAC
TGGATGGTCTCTGTCAACCTCGCGGTTCTTCCAGGGGAAGACACGAAGGC
ACACATAGCCCTATACACAGCAGCAGCATGGTTCAAGCTCGTTTTCAGAA
CGCGGGGTGCTGCTGCATGGGTGTGCTCCGACACCTGAAAAACTTGTCCT
GATGAGGATCCAGCTTCAGTGGAAAAGTGCTGCTTTGGCGGCGCTACATC
AGCCTCTTGGGGTTTACTTTTTCTACGTGTTTTTTTCTGTGTCTGGTAGA
GGGCATACCGTAAGAGGCGGAGAGATGGCAACCCCCCTAGACCCGTTTTC
AAAACTCGATTGCTCCACAAACATGCTTGTGCCAACACCGAACATGGCGG
TTTCGGAAACATCTCGCCGACGGGTTTCCGTAGACGCATCGGTCTATTTC
CGCACCCGCTTTGTTGCGGAGAGATCGAGCTTTGAAACTCGGCCCAAGGG
GGGTCGCCTCTTACGGTACTATGATGTTTTGCTTTGTCGAGTCCCCTCGC
GAACACGATCTCTCGTGTTTTGTGCGCATAAATTCCGGAGTACGAACTGA
GCCCAGCATGCCGTGCTTTGGAATAACCGTGGTTTTGATGTCCACGACGC
CACGCAGGCGGACGAGGAGGAAGTGAAGCTGGTGGAGGAACGGATGTCGC
AGGTGTGTGGGTGACGACTAGCACATGGCACATGTTCCTGGCTTAAGGTT
CCGCGCTGTGTAACCTGCCTCTTGTGTGACCCCGGCTGATTTGTTGTTTG
CTGTTTATGTCTTCACATTATAAACCGTTCTGTTATTTCTGCCCAGTACC
TTCGTATGTCCTTACTGATCCAGCACTTGACGGGGTCGATTCCCGTGGTC
ACAAGCTAACTTACCGACAGAAGGTATACGAAAATGAAATGGGCCCGAAG
GGTCCGCAAGCCAATAGAAGTCAACGACAGATAGTCTAGGCCACTCCGCT
CGCCTCTACACGCTATGCGATACGTTAGGTATACTCGCCGAAAGGCCTGC
AAACCGGCGCAAGAATGGAATGGACGAACACACACACTGACCTACAGGAC
CGCACAGAATGAGGGGAGTAGATGTATTCCGCGGTGGTTGGGGGAAGGAC
ATCTTGTCTACTCTGTACGACGGTATGCTATCCGAGATGTCGGCGTCCGA
ACTTGTTTATTCTTAACATGAATTGTGGCTTGGGGCATTCACACGCGCCG
ACTACAGGCAGCTTCACCACCGGCAACAGACGAGTAATGAGCTCTCGGCA
CATTGCGCGTTAGTTTCAGTCTGTTGCGGGGTCGCACGGAGTACGGTGAA
CTCACCGCGTGACAAACGATAAATAATTGCACGCCGACAAGGTATTCCGT
CTGTGTTGTGTTCCGTTCCTGGGTACGGTAGGTTGCGTAAGATATCAAAC
CCCTGGACGGATTTTCAAATCTCGATTACTCCGCGACGAAGAGGATGCCG
AACTTGAAGTATACGTTTTCGGAAAGCTCTCGACGAGACGGTCCCAACGC
CGCCATTTTCGGCACACTGCTTTTGCTGCCGAGATATCGAGCTTCGAAAG
TTGGTCCAGGGGGTGTGATATCTTACGCAACCTACCGCACCCCCGAGCAT
CGCACAACGAGCCATCTTTGACGTATTGATGCGAAGAGGTTCCAAGCAAA
AACTCACACGTCTACGTGGAGCTGGCGTCGTGAGCAGGCAGGCAGTGAAA
CCATTTGCCTGAGGCCTGCGTCGCAATACACCTGAACGTGTTACTTTTGT
AACGAAACTCTCGTGTGCGTTTATGTCGAAAGCGCGTCTCGGTGACGGTC
CCTCATTATCGTGTTATCCTCTCCAGATGTCAATCCCCATCTCCCTCCCT
GCAGAAATGCCAGCTCCGGTTTAGATGCCAACAACGCCAGGCATCACGGG
TAAAGAGACGCAAGTGCTTACCCTTGTAAAATGCCCCCCCCCTGTTCCGA
CTGCTCCGTCCTCTCGAAGACGCGTGGTCAAGAGCGCTAAGGCACGCAAG
ACATGAGAGTACGCCCTCCCCCCCCCCCTCCTGTGCGATAGGATATATTG
GCTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGAACGAT
TGGCCATCGGGGATCGGTCCTTTGAGAACAACCCTCCGTCCTCTCGAGGA
CGCGAGGTCGATGATCTAACCGCTACGGCATGCAAAGCATAAGAGTACGC
TCCCCCCCCCCTGAGCCGACTGGTTTACCTTCTCTGCATGCTTGCGTAGC
TCCTTCGGGAGGAACAAGAGGCGAGAATGGTGGACATCTTCGGCATCCCG
TTCAACTTGGTTATCCCCGACGGCGGGGCGGGAGGGGAGCCGGGGACAGC
CGCCAGGGAAGCGCAACAGGTGTGGAGGCTGAGGAATTCTACCGTAAGGA
TGCGAGAGAACGCATGGCGGTGCAATCGATATATTGATGATTTCGTTCTG
GACTTTTTAGAAAGTATACGTCGCGTAATCAAAGAGAGACGAGCCGTTCG
AGATAAAAAGGCCACATTCGAAGGGGGCGATTATCCCACGGGGGTGCGAT
ATCACCGGTACGTGCGATATCATCAATCCCCGTGCGATGATCGAATCCAA
AGCAGTCTTGACCCTGAATGTTTATTGCACGGGGGTGCGATATCACCGGT
ACTTGTGGTACAACTGGAAGGTGCGTTCTCTCTCATCCTTGCGGTACCAC
CACCGATCAAGTCCCTACAACATGTTACCCGAATACTCTCCTGTAAATCT
TGAATTTTCGAGGAATTAGCCTCTTCGGAATATCTATCCGAGTTTCTTCA
AGTTGTTTTTCCGATCAGGTAGGGAGGAATACCACTTTGCCGCTCATGTT
ACGCATTGCGGCGCCTACCCTGTTTCGCCCTTTCCGTGGTATTGAGCGTG
AGTGTTCGCGGAGGGGTAGTTACGCAATATGCGGGGGGAGGGTGTCATGG
ACCATCCGCACCCACCCGCACTCTTGAACCCGAGCGGCCATCGTGCACGA
AGCGAGGGTTTTTCGTTCACGGCTTTCCATCTCGTTCTTCTCCAAACGCA
GGGTAGGAGCTCTGGCAGGGGGGAGCAGGGGGGTGGTGGTCGTGCTGCCG
GGGAGGGCGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTG
GGGATTCGCGAATCTATGAAGGCGAAAGCCGAGTCGGACTTGAGAGATAG
GAAGGCGAGGGAGGAGGAGATGTCGCCGGGGGCAACGCTCAAGGTGGCCG
CGCTGTGGCTCGTGCTGATATCCCAGGTAACGTCTTCAGTCGACCAGTCT
CTTTCTTGCTTTCCCCCGCCCTCTTTCTCGCCCCCTCCTTCCGCAGGTTG
CATGACGTAAGATACCACACACCTCAGACCGATTCGCCAAAGCCCGGGTA
CTCCACAAAGAACATGATGCCAACATAAAATTGTGCGTTTTCGGAAAACT
CTCGACAAAAAGGCTCCAACGCCACCATTCTCGGCACAGTCCATGGTTGT
GCTGCAGAGTAATCGGGCTGTGAAAAAAGGTTCAGGGGGTGCGGTATCTT
ACGTCATGCAACCTACGGCACAAATGGGTCCAGGGTATGTGGTATCTTAC
GTCATGCAACCTACGGCACAAATGGGTCCAGGGTGTGTGGTATCTTACGT
CATGCAACCTACGGCACAAATGGGTCCAGGGTATGTGGTATCTTACGTCA
TGCAACCTACGGCACACGCACAGCTCGTCATGGCACCCGCCATCTGGTTT
CTCTACCTTCGCTGTGCGCTTGGTTCGCTCGGAAGCACGACCCCCCGCGT
CTGCGCCAGCTCTCCATGCCCTATTATCAGCCCTCCCCCCCCCCCCCCCT
CCCCATCTGCAGCTGTGGCTACTGGTGGTGTTGTGGAACGACCCAATGGG
TCCCGCATCGTCGACGTTTCTGCAAGACTGAGAGGGGCACGTTGGTTTTG
TCTGTCGGTGTGAATAAGTGGAGCTGTACCCGGTTCGTCAGGTGTTAGGT
CGGGACAGAGTTGTGCGTGGTGTGATAGGGAACAATAGTCCATGGAGAGG
GGTTGACGAAGATTGCAGGTTTGGGATTCATGGTCTGGTGCGCGTGTGTC
AGGTTGGTTCAGCGCCGGATCAATCGATTGTTCATACCGTTCTGCTGCAT
CGAGATTTTGCAGTGCGAGCATTATTCTAGGTTCGCATTCGACGCACTTC
AATTTCGAGTACGTCTAAGTCAACTGTAATGTGCGAGTGCGATTCCCCGT
GCGTTTTAGTTGTCGGCATGGAGGTGGCAGTCTTTCTGGCGGACATGAAT
GATCGGCACAAGAGGAAGAGGCGTCACAAAGGCCGTGTTTTACGAGACCG
ATCGTCCTGTGTACAATCGCCACAGAACGAATATGACGTCGAGAGGCGGA
GATATGCGGTGGTAAATAGATGTCGTTTCTCTGCGCAGTGCTGATCCGGC
AAAAGAGTGGAGACGCACGTCTCCTTGGGGTGTACGTTGCTGTTTAAGAC
GAGAGGCAGCAAGAGCCTCAAATTAGACAGGGCGGATAGCTTCGCGTGCG
CATGTTACGTTTTCGAAACGAGTGTTGTGTGAGAAGCGATCAAGACGTGA
AAAGAACTCTGAACAGCCTAGTGTGTGAGGAGCGACCAAGATGTGAACGA
AAACTCTGAACGGCCGGCAAGGGCAACCTCGGCGTCACACTCCAGGAGCA
GCGGTACAGACGTGAAGACGGGCACAACCAACACACCTTTGTGAAGTTCG
CACCAGCATAGGTCGAGCCGCATCAGCTGGGAATCCCATTTCATTTTGTT
CATGTTTGCCTGGTCACAATCTCCATGATACTCGTTGACGTTACATCTTC
AATTTGCACGCAATATTACCAAGGATTTGTATCGGCAGAGTCCAAAATGC
CAAGGTGCCAGCATTCGCTACAAGCCAGTGTAGCATGGGGCAAGGTGAGT
TCTTGAAAGCTTCGCCCCTCTCCGGACACACCTAGGCTTTCTTCAAGTGG
GCCTGTGTGTATCAGAGCCCTGATCCTCCGCTCGAGACCGGCGTCCTGAG
GTGTGGTTTCGGTGCTGGGATGATGATACCGCCGCCGGGCGGTGGTCTGA
CCGATGCCTTCCTGCTGCCCACCACCGCCGCACCATCCATCAACCCGCGC
GGACGGTTCGCCGCGTTCCTCTCGCCTCCGCGGAGCTCCGCAAGTGATAC
CCCTCCCGTGCTGATTCGGCCGGTGTCGCTCAACCCCGCGAGGTTCTTGC
GCCGTGGAGACAACATCGACGTAACCTTACGGGCGTTTCCCCGCTGCGTG
TGGCGATTGCTCACCGGTGCTAACCGAAGCCGATCTGTGCAGCTCGTGCT
ACTACCACTACCGGCAACGCTATAACTCGGGGTGCCGCCGTTTCGACTAC
CGCCGCCGCCAGCGTTCTCCCGCGTATGTCCGGCCCTTGCACAATAACTG
TCGCTGCTGGCACCCCTAGGCGGTTGACGAAGAAGGTGGGTCGGCGAGCG
GCGGGCTGATACAACCGTCGTCGCAAAGAGTTTCACCCTGCCCGACCCGC
ACCTCTGGCACTTCACAGGCCTCCTCCCTACACCGCTGGAGCACGTGCCA
CCGCCGGCCCGCTGGCCATTCGCCGGCGGCGAAGAACGGGGAGAGAGAGC
GGAACCAGAAGAACTGAAGCTTACGACGGAGAAGGCGTCGCTCGGCGTCC
GCGGGGGCGGGCACGTTCGATTCATCTGCCCCGGGCGCTCGGGTCTGTTG
ATGGTTGTGTGCGGGACACACGCGCACGATATGTTTGAAGGGGTGTTGCA
TGTTTTGAGACTGTTGTAGCAGTTTCTTTTCGTTGTTGTTGACGATTGAT
TCGTTGGGGAGGGGCAACACGCAGCCCTTACGATCGGGAAACGTGCAATC
GAAGTGATACACAACTACCCTGGTCTTGTCGGCTCCCCCACCGGTGCATC
CCACATCTCATGCAAAGGCGGGTTTCCCGGTTCGTTTCGCTTGATATGCA
TAGCCTTGGGGCAATTTCTTGCGTACCCGAAACCTGGGTTCAACTTGTCA
CCATCGCCTTTGAAGTAGGAACGAGGAGATACAAATAGATCAATAATAGA
AGCAGGACATCAACAACGCTGAAACACAAGAGCGACGCGATACTATAGGC
ACTTGAATGAGAGAGAAAGAACTTCTGCACTGTAGCGCTTGATTGTTTCT
TGGCTGAGCTTTTGAGCTGGAGCGGTGGGCTGTACAGCATCTTACAGGGT
TATCCCAGTCCTACCCTGCTTTTGTCCCTCTGAACTAGTTGTCCTAGGAT
CTTGTGCCTTTGTGTGATTGGTGGGGTGGGATTTTTCTCTGATTTGATCT
TTTTCATTCCATAGTTTTTGGTTTGGTGTTGACCACGGCGCTCGTCTCAC
TGCCTTGAAGAACATTCAATGGGAGAGGAGATACTGGATTCAGATCAGAG
TAGCTACGAAGTTAAAGGTGAAGAACCCAGCTGACGCCTCATGTAGACCG
GAAAGTGCGCCTCTTCTTAAACACTGATGTATCCTCAAAGCACCA

Coding sequence (CDS) from alignment at chr_28:2194783..2203627+

>Ec-28_002390.1 ID=Ec-28_002390.1|Name=Ec-28_002390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1065bp|location=Sequence derived from alignment at chr_28:2194783..2203627+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGACGAGGTTGATGCCGTTGCTCGCGTTCCTCGACGCCGCTTCTTC
CTGGAGCGCGACGGCTACCGCAGCCACCACCGTTGCCTTCAGCAGCCCCC
CCCGGATGTTGCTCGACTTCTCAACGCTGACAAGCTCTCGAAGACACGGC
GGTCAGAAACATCAAATCGAACCTGACAACAGCAGCAGCAGTAGCAGGGC
AACATTCGCGTCTCGAGAGAGGGCAACATTCGCGTCGCGCGCGGGGGAGC
GAAGCTCAGCGACGCGCATGAGCAGTGCCCCTTCAGGCGAAGGACGTCGT
GAGGGAAATCGCGTCGTGGGCAGCATCGCTCGGGGTGGCGGCGTGGTAGC
CTTCGTGACGGCGGCGTGCTCAGCTTTCCCCAGTTGCTCCTCCGCAGTAG
CGGCAGCAGCAACCATCGTTGGGGAAGCGGGCGGGTCGGAGATGGGTGCG
AGGGTAGACCCCGCTGCTACGACCTCTTTCGCTGCTGTTGTGGTGGCCTT
CGCGTTTCTCCAGGCGCGGATTCGAACCGCTGTAAGAGCGCGAACGGCAC
GGAGGGACTACGAGGTTCTCTTCAAAGGGATGAAAGCAAAGCAACTCGCC
GGACAGGCGGACGAGGAGGAAGTGAAGCTGGTGGAGGAACGGATGTCGCA
GCTCCTTCGGGAGGAACAAGAGGCGAGAATGGTGGACATCTTCGGCATCC
CGTTCAACTTGGTTATCCCCGACGGCGGGGCGGGAGGGGAGCCGGGGACA
GCCGCCAGGGAAGCGCAACAGGGTAGGAGCTCTGGCAGGGGGGAGCAGGG
GGGTGGTGGTCGTGCTGCCGGGGAGGGCGGCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCTGGGGATTCGCGAATCTATGAAGGCGAAAGCC
GAGTCGGACTTGAGAGATAGGAAGGCGAGGGAGGAGGAGATGTCGCCGGG
GGCAACGCTCAAGGTGGCCGCGCTGTGGCTCGTGCTGATATCCCAGCTGT
GGCTACTGGTGGTGTTGTGGAACGACCCAATGGGTCCCGCATCGTCGACG
TTTCTGCAAGACTGA

Synonyms

The feature 'Ec-28_002390.1' has the following synonyms


Synonym
Esi0033_0126
Esi_0033_0126