Ec-28_002180.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_002180.1
Unique NameEc-28_002180.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length194
Homology
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BLAST of Ec-28_002180.1 vs. uniprot
Match: D7FXL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL7_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 9.750e-72
Identity = 178/193 (92.23%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:    1 MTPPKEVPEVFSVVLGYCVPTAYAEFAELTEVLAGGVRNQPHPYRLSSQRRLGPERRTCSPPSPTVYFRSSPSANDPRYLAPRPEAGPPFSTSSIRRKKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNGVYNDSQPXQVDXXXXXXXXXQKWTYYYF 579
            MTPPKEVPEVFSVVLGYCVPTAYAEFAELTEVLAGGVRNQPHPYRLSSQRRLGPERRTCSPPSPTVYFRSSPSANDPRYLAPRPEAGPPFSTSSIRRKKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     DGNGVYNDSQP QVD         QKWTYYYF
Sbjct:    1 MTPPKEVPEVFSVVLGYCVPTAYAEFAELTEVLAGGVRNQPHPYRLSSQRRLGPERRTCSPPSPTVYFRSSPSANDPRYLAPRPEAGPPFSTSSIRRKKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAQGGDGNGVYNDSQPPQVDNGGNDAAGGQKWTYYYF 193
The following BLAST results are available for this feature:
BLAST of Ec-28_002180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXL7_ECTSI9.750e-7292.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2015096..2019832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length928
Hectar predicted targeting categoryother localisation
Gene idEc-28_002180.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002180Ec-28_002180Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 2015096..2019832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002180.1Ec-28_002180.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 2015442..2019832 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002180.1.5Ec-28_002180.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2015096..2015514 -
Ec-28_002180.1.4Ec-28_002180.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2016247..2016290 -
Ec-28_002180.1.3Ec-28_002180.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2017983..2018160 -
Ec-28_002180.1.2Ec-28_002180.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2018919..2019190 -
Ec-28_002180.1.1Ec-28_002180.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 2019818..2019832 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0021803UTR:Ec-28_002180.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 2015096..2015441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002180.1CDS:Ec-28_002180.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 2015442..2015514 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_002180.1 ID=Ec-28_002180.1|Name=Ec-28_002180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=194bp
MTPPKEVPEVFSVVLGYCVPTAYAEFAELTEVLAGGVRNQPHPYRLSSQR
RLGPERRTCSPPSPTVYFRSSPSANDPRYLAPRPEAGPPFSTSSIRRKKM
DNQRSGSTQGGGGNNGGRSDGALTQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQGLAQGGDGNGVYNDSQPPQVDNGGNDAAGGQKWTYYYF*
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spliced messenger RNA

>Ec-28_002180.1 ID=Ec-28_002180.1|Name=Ec-28_002180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=928bp|location=Sequence derived from alignment at chr_28:2015096..2019832- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCGCCAAAGGAAGTTCCCGAAGTTTTCTCGGTGGTTCTGGGGTA
CTGCGTACCTACTGCGTACGCCGAATTTGCCGAACTCACCGAAGTTTTAG
CCGGGGGGGTTCGCAACCAGCCGCACCCCTACCGGCTTTCTTCTCAACGG
CGGCTAGGGCCGGAGAGACGTACCTGCTCTCCCCCTTCGCCCACAGTTTA
TTTCCGCTCCTCTCCTTCCGCAAACGACCCTAGGTATCTCGCACCCAGAC
CCGAGGCCGGACCACCCTTTTCCACTTCCTCCATAAGGAGAAAAAAAATG
GACAACCAAAGAAGCGGATCCACCCAGGGGGGCGGTGGTAACAACGGCGG
GAGATCGGACGGAGCGCTAACCCAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAG
CAACAGCAACAGCAGGGGTTGGCTCAGGGTGGCGACGGGAACGGAGTCTA
CAACGACTCGCAACCGCCCCAGGTCGATAATGGCGGGAATGACGCTGCCG
GGGGGCAGAAATGGACTTACTACTACTTCTAGACCATTCTTTGGCCTTTC
GACAACACAGCGGTGGTATGCATAGGGGGTGGATAGGAGTGGCCCCCCCT
AGGCTTTCTCGCTGGTGGTGGTGATCGTGTGCCCTCGGTTCACCGCTACC
TATCGTTTCCGGTTTGTTTTTTGTCGACGCGCAAGATGACGAGATGATGG
CCGTGCTGAGCGTAGAGGGCTTTTTTGCAGATCAGACGCAAATGGGGAAC
AGCAACAGAGAGCCGACGGGCTGCGGGCAGGAGAGAGATGATCATTCCGT
ACCGGTGGGATGGAAGTTTTTGTTTGCACAATCATCCACATGGCAACTCC
CTGCCCCTACAATGTGCCCCCCCCCCCC
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protein sequence of Ec-28_002180.1

>Ec-28_002180.1 ID=Ec-28_002180.1|Name=Ec-28_002180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=194bp
MTPPKEVPEVFSVVLGYCVPTAYAEFAELTEVLAGGVRNQPHPYRLSSQR
RLGPERRTCSPPSPTVYFRSSPSANDPRYLAPRPEAGPPFSTSSIRRKKM
DNQRSGSTQGGGGNNGGRSDGALTQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQGLAQGGDGNGVYNDSQPPQVDNGGNDAAGGQKWTYYYF*
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mRNA from alignment at chr_28:2015096..2019832-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_002180.1 ID=Ec-28_002180.1|Name=Ec-28_002180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4737bp|location=Sequence derived from alignment at chr_28:2015096..2019832- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCCCGCCAAAGGTAATATCACGGCCGCGAGTGTCAAGCATCCCTTC
AACTCCCGGGTGGGACGATACACGAACAACGGCCCCATCTGTCCCCCACG
TCCCCTGCACCAACGCCCGGCTATGGGTGGAGCAACAAGTCCCCAACAAA
CTACCAGCAAGAAAACGCGGTGGAATTAACGTGTTGGTTCGGGGGAAGAA
CCGAACTTACTTCTTTTTTTTTTACCACGCACGGAGCACCGTAACAATTT
TATATTATTGCTCTCTCCGAGCATTACCGTATATGACACAAGATAACACA
CCCTCTGGACCGATTTTCAAAGCTGGATTACTCCACGACGAAGAGGATGC
ATAAATGAAACAATACGTTTTCGAACAGCTCTCGACGAGACGGTTCCAAC
GCCGCCGTTTTCGGCGCTGTGACTCTTCCTGCTGTTGAGAAATCGAGCTT
TGAAAATCGGCCAAGGGGCTGTGTTATCTTGTGTCATATACGGTATTTTC
TTTCGTTTTTCTGTTTCTGTTGAGCACCTTCTTGTCCTTCTCTTACGTAT
TCGGGCTATCCTACTGCTGTAGCGTTACAGCGTCGTCAGTCGTCACCCAG
ACATGTATTTGGGATTTTGGAATCACCGATCTACCGAAGCAGGAAGTTCC
CGAAGTTTTCTCGGTGGTTCTGGGGTACTGCGTACCTACTGCGTACGCCG
AATTTGCCGAACTCACCGAAGTTTTAGCCGGGGGGGTTCGCAACCAGCCG
CACCCCTACCGGCTTTCTTCTCAACGGCGGCTAGGGCCGGAGAGACGTAC
CTGCTCTCCCCCTTCGCCCACAGTTTATTTCCGCTCCTCTCCTTCCGCAA
ACGACCCTAGGTATCTCGCACCCAGACCCGAGGCCGGACCACCCTTTTCC
ACTTCCTCCATAAGGCGAGTTGTTTCATCAGAAACCGGAAGCTGCGAATG
TGAATGTTGGGAGCCAGTTATCAGTTGGTTGTATATATTATCGTCGGGGG
AGGTTTGAAGAAGTTGTATCGTAGCAGCGGCGATGACTGCCATCGGCGAT
GACTGCCCGTGGGTTAATTAACTCACGGGTGTGTGCGCACATCGCTCGCA
CGACGTCCTCTCCCGGAGAATGTGCCAACCTGCCGGTTGTAACTAACTAC
TGCTGTTCCAGCGCCCTACACCCGCAGCAGCGGATGTTTGCCCTGTGTAG
AGCTGGATGATGCTTATGTCCACGTAGTCAATCTATAAGCTAGACCTGAG
ACCAGGCGTTTCAGTAGTTTGAAAAACGGTGTGCATACCATCACCCCAGG
AGGGGAGGGTAGAGAAGGGCTCTTCGGTGTGACCACGGGTTGGAGTAATC
GGCACTAGTGCTGTGAGCGCTGATTTGAAGTGAAGGCAAAAAATTAAAAA
AAAAAAAATACCATCACCTGTTAGTGGATCGAACAATTGTGGCATCAGAT
GGCGTTGATGTAATTTCGTTGTTTCTTGAGTCTCTCCTTGTCCAATACAG
AGAGAGATGAAGAGGCTGCGGTTCTGATCTCCTCTCATGGCGGCCAAATG
TGTGGTTTAGTCTAAAGGGGTTCACAAGCAGTGCTCAAGTTTGGCGTTAC
GTTTGAGCATGAAGTTATGCACTCCTAGATGAGGGCGCTCTCTGAAATGT
TGTTACTTCTACAATCGAGCAGGAGAAAAAAAATGGACAACCAAAGAAGC
GGATCCACCCAGGGGGGCGGTGGTAACAACGGCGGGAGATCGGACGGAGC
GCTAACCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAG
GTAAACCGTGTTGACGTGTTATGGGTACTAGGAGCGTAGGGGGGAGGGAG
AAACCTACACTTGTGTTCCGATAAATAGTCCACATGCAATCAGATAAATA
TTAATAGATCAAATCAGCTGATCCTGTGGAGACTTGCTGAGCTGGTGGAA
GTTTGTGGGCGGCACATTATTTTCCAAAACAAATTCGAATCAAAGTGTAT
TTCGGTATCATAGCAGCGATAATTCCGATCCTTCTCTTGGTCGGCGATGC
AGCGTTTAGCGGTTAACTCTCCTCCGTGTTATTTTTAGCGTCAAGGATAC
GTGGAGGACGGGCGGAGCAGAAGAAACCACCAGCAGCGTGACGTTTGCTC
AGAATCAATCGCCTGTGGCATCGCGGGATGCAAGCGGGATCCAAAGGTTT
ACTCATATCTATTGTGAAAAACACGTCAGTGTTTCTCGAATACACCGCGC
TCTCCAAAAACACGCGCGAGGTGCTGCTACACGTCCCTGCGAAACATGTT
CGCTTTTTCATCTCCGATTGCACCAATGAAAGCCGCATGCCCGTCCCAAA
ATAAAGCAACCCCCCCCCCCAACCCCCCTCAAAAACAAATTGGTTGATGG
GCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCCTTCCC
TTGAGGTTTCTACGGCGGTGACGTTTTTTTCCCCACGTACGCATTGTTGG
CTTGCGGACCCTTCGGGTCCAGTGTATTTTCGTATACCTTTGGGTAATTC
AGCCTGTGACCACGGGAATCGATCCCGTCAAGTGTTCGACTAGTACGGAC
AGAAGAAGGCACTGGACAGAGAGAACGGAACGGTTTTTAATGTGAAGACA
ACAACAACAACAGCAACAACAACAACGCATGCCTTTTTCGCGCGCCCATC
GAAACAATCTCCCAGCAGCTCGAATCCAAGTTAAATCAATCAACATCATC
ACCCCAGTTTTGTTTCGCTTCACCGCCCACACCGGTCTTTATGGGCACGG
GACCATTGGGGTCAAGTAATGTTCTTGGCCAAACTTTCACCCAAAAAGAT
GCTGTTCAATTTTGTTTTCATCTTTTTCCGGAGTAAATCTTGCGTTAGTC
ACACAGATGTTGGCCCGAGTGGTTTGTCAAAGGCCAACTTATTTTTGGCA
CTTTCAAGCAAATCGTGGAAGAAGAAACAGGAGGAGAGCTTGTCTCGAAC
AGAGCTCAGTCGCGTCCGACGCTTCTTGTCTCCTGATCGAATAACCCGGC
ACCCATTTCCGCTTGCTGCGTGAGAGAATAGGCCCGTGAGTAGCAGCGTT
CAAGGTTTGACCTCCGCACGCAAGTCAAAAGACGCGGTACCTACGGTTGC
GTAGCTTGCTGTTGGACTTCTTAGACCCACGTGCTGTTCGAGAGCAAGCG
GCACTGGAAAGAACATCAAGAAACAACCATGACCCTCGCGTGGTATCCTC
TTTATGTTGTTGTGCCTGTTGTCGTCCGTTTTCGCCTGCCAGGGGTTGGC
TCAGGGTGGCGACGGGAACGGAGTCTACAACGACTCGTGAGTGCTTCTCC
ATTCCTCGTTGTGTGTATCTACAACGAGGGAAGAGAGTGCTGCACTCTTT
TCGCAGGATAAATCGAAGCAAAAGCACCGCAGCAGGGGTGGATAGGGGGG
CGTCAGGGAGAGGAGCCCTTGTGTGTGTGACCACGGGTTGGAGTAAACTG
CACGAATACTGTGAGCGTTGCTTTGAAGTGAAGACGAAGAAAATGCCGTC
CTTGCCTCAAAGAACAACAGCCCTTGCGAAGCAAATGGACTTGTTCGAAT
ATTTCTCCCTTCTGTCCTACGGCGCAGCAACCTCAGCGGTACAATGTACT
GCAGTGTGTTTTCCAAAACTCCCCAGCCCAACGAAAGGCCTTCGGGGCTA
ATGCACCGTTCGCTGCACATGTGGCGTATGCGTTCGTCATCACTCTTTTT
AGTGTTTGTTGGTCCCTGCGCGACGCGGTTTCGTTTTCGAACCCTATGGG
GCCTCTTGTCCTGTGCTGTTGCCGCATGCTTCTACGGCCGTCCCTTCCGA
GGACTGGGTTTTCCATCCCTTCTGCGGAACGGATTTTCCGTCCCTGCTAT
ATACCACGGGATGGACATGGAAGGTCGTTCGCTGGATCACACCCCTTTAT
CGAACCATGTCTCGGGCTTCCGCCGGCCACGTCCAGTGATGCCAAGAACT
GACGGTCGACTGCTGTTTTGTGTTTCTGTGGCGTCTGATTTTCGCTCGAC
ACTCTTTCCTCCCGACAGGCAACCGCCCCAGGTCGATAATGGCGGGAATG
ACGCTGCCGGGGGGCAGAAATGGACTTACTACTACTTCTAGACCATTCTT
TGGCCTTTCGACAACACAGCGGTGGTATGCATAGGGGGTGGATAGGAGTG
GCCCCCCCTAGGCTTTCTCGCTGGTGGTGGTGATCGTGTGCCCTCGGTTC
ACCGCTACCTATCGTTTCCGGTTTGTTTTTTGTCGACGCGCAAGATGACG
AGATGATGGCCGTGCTGAGCGTAGAGGGCTTTTTTGCAGATCAGACGCAA
ATGGGGAACAGCAACAGAGAGCCGACGGGCTGCGGGCAGGAGAGAGATGA
TCATTCCGTACCGGTGGGATGGAAGTTTTTGTTTGCACAATCATCCACAT
GGCAACTCCCTGCCCCTACAATGTGCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at chr_28:2015096..2019832-

>Ec-28_002180.1 ID=Ec-28_002180.1|Name=Ec-28_002180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=582bp|location=Sequence derived from alignment at chr_28:2015096..2019832- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCCCGCCAAAGGAAGTTCCCGAAGTTTTCTCGGTGGTTCTGGGGTA
CTGCGTACCTACTGCGTACGCCGAATTTGCCGAACTCACCGAAGTTTTAG
CCGGGGGGGTTCGCAACCAGCCGCACCCCTACCGGCTTTCTTCTCAACGG
CGGCTAGGGCCGGAGAGACGTACCTGCTCTCCCCCTTCGCCCACAGTTTA
TTTCCGCTCCTCTCCTTCCGCAAACGACCCTAGGTATCTCGCACCCAGAC
CCGAGGCCGGACCACCCTTTTCCACTTCCTCCATAAGGAGAAAAAAAATG
GACAACCAAAGAAGCGGATCCACCCAGGGGGGCGGTGGTAACAACGGCGG
GAGATCGGACGGAGCGCTAACCCAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAG
CAACAGCAACAGCAGGGGTTGGCTCAGGGTGGCGACGGGAACGGAGTCTA
CAACGACTCGCAACCGCCCCAGGTCGATAATGGCGGGAATGACGCTGCCG
GGGGGCAGAAATGGACTTACTACTACTTCTAG
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Synonyms
The feature 'Ec-28_002180.1' has the following synonyms
Synonym
Esi0033_0100
Esi_0033_0100