Ec-28_002140.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_002140.1
Unique NameEc-28_002140.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length205
Homology
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BLAST of Ec-28_002140.1 vs. uniprot
Match: D7FXL3_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXL3_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 6.010e-144
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 3 
Query:   27 MSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAETKEK 638
            MSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAETKEK
Sbjct:    1 MSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAETKEK 204
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A0P1A6C5_PLAHL (Nudix hydrolase domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6C5_PLAHL)

HSP 1 Score: 163 bits (413), Expect = 2.170e-43
Identity = 88/184 (47.83%), Postives = 114/184 (61.96%), Query Frame = 3 
Query:   57 LDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKY 608
            L++ E++ IV +  N V G A RA MR  NLPHRA+YV I+   G+       +VQ+RTMIKDYCPG+LDP  GGVV +GES E NA+RE EEEMGVK T             LRH  +F+Y++DH+ VWG  +DC++ G +V Q EEV  V   +  E++A R       E TPDG+ A EKY
Sbjct:    3 LNSKEKVCIV-DGQNNVIGMADRAVMRAYNLPHRASYVVIKNTAGK------YYVQRRTMIKDYCPGMLDPMAGGVVQYGESMEVNAKREAEEEMGVKNT------------PLRHLTNFYYENDHSRVWGGLFDCIFDGPLVLQKEEVDEVFTLTADEILARRK------EFTPDGIFAFEKY 161
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A067CR68_SAPPC (Nudix hydrolase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CR68_SAPPC)

HSP 1 Score: 157 bits (398), Expect = 3.680e-41
Identity = 87/195 (44.62%), Postives = 118/195 (60.51%), Query Frame = 3 
Query:   24 SMSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKY 608
            S +++ N   GL A E++AIV ++ N V G A RA MR  NLPHRATY+ I+   G      D +VQ+RT+IKDYCPG LDP  GGVV  GE++E+NA RE+ EEMG+  T             L +  +F YK+  +NVWG  ++C + GE+  QPEEV  V   S +E+++ +D      E TPDG+ ALE Y
Sbjct:    4 SSASMDNKLHGLTAKEQVAIVDDNNN-VIGKADRAVMRVFNLPHRATYIVIRNSSG------DFYVQRRTLIKDYCPGFLDPMAGGVVQFGETFEENAEREVAEEMGITNT------------PLTYVTTFPYKNGDSNVWGGMFECTFDGELTLQPEEVSEVLVMSAAEILSRKD------EFTPDGIYALELY 173
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A1V9Z936_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z936_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.820e-41
Identity = 85/185 (45.95%), Postives = 111/185 (60.00%), Query Frame = 3 
Query:   54 GLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKY 608
            GL A E++AIV ++ N V G A RA MR  NLPHR+TY+ I+   G      D +VQ+RT+IKDYCPG LDP  GGVV  GE++ +NA RE  EEMG+  T             L +  +F YKD H+NVWG  ++C + G++  QPEEV  V   S +E++A       K E TPDG+ ALE Y
Sbjct:   11 GLTASEQVAIVDDNNN-VIGKADRAVMRVFNLPHRSTYIVIRNSKG------DFYVQRRTLIKDYCPGYLDPMAGGVVQFGETFAENAEREAAEEMGIHNT------------PLTYVTTFQYKDGHSNVWGGMFECTYDGQLTLQPEEVSEVLVMSATEILA------RKAEFTPDGIHALELY 170
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BLAST of Ec-28_002140.1 vs. uniprot
Match: G4ZW50_PHYSP (Nudix hydrolase domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=G4ZW50_PHYSP)

HSP 1 Score: 156 bits (394), Expect = 1.020e-40
Identity = 87/188 (46.28%), Postives = 109/188 (57.98%), Query Frame = 3 
Query:   57 LDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWL 620
            L A E + IV E  N V G A RA MR  NLPHRA+Y+ I+   G+       +VQ+RTMIKDYCPG+LDP TGGVV  GE  + NA RE EEEMGVK T             LR+  +F+Y DD + VWG  +DC + G +V Q EEV  V   +  E++A R       E TPDG+ A EKY  ++
Sbjct:    3 LSAKEEVCIVDEENN-VIGKADRAVMRAFNLPHRASYIVIKNSSGK------FYVQRRTMIKDYCPGMLDPMTGGVVQFGEPMDVNAEREAEEEMGVKNT------------PLRYLTTFYYGDDRSRVWGGLFDCTFDGPLVLQEEEVDEVLTMTADEILARRK------EFTPDGIFAFEKYLKFI 165
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A3R7H0D8_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H0D8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.020e-40
Identity = 90/193 (46.63%), Postives = 112/193 (58.03%), Query Frame = 3 
Query:   57 LDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWL-AETK 632
            L A E + IV E  N V G A RA MR  NLPHRA+Y+ I+   G+       +VQ+RTMIKDYCPG+LDP TGGVV +GE  + NA RE EEEMG+K               LR+  SF+Y D  + VWG  +DC + G +V Q EEV  V   +  E++A RD      E TPDG+ A EKY  +L AE K
Sbjct:    3 LSAKEEVCIVDEENN-VIGKADRAVMRAFNLPHRASYIVIKNSRGK------YYVQRRTMIKDYCPGMLDPMTGGVVQYGEPMDVNAEREAEEEMGMKNV------------PLRYVTSFYYADKRSRVWGGMFDCTFDGPLVLQEEEVDEVLEMTADEVLARRD------EFTPDGIFAFEKYLKFLEAEAK 170
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A4D9CX45_9STRA (Nudix hydrolase domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX45_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.340e-40
Identity = 87/194 (44.85%), Postives = 116/194 (59.79%), Query Frame = 3 
Query:   57 LDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAETKEK 638
            L ADE + IV ES N+V    RR  MR++ L HR+TY+F +   G+       +VQKRTM+KDYCPG  +   GGVVG GE+Y +NA RE EEE+G+  +            E  H F+F Y+D+   V+GDAW+ VW G +  Q EEV+SVH  +L E+   R +AG+K   TPD + A  KY D+L E  EK
Sbjct:    3 LSADEIVDIVDES-NQVLRQERREIMRKERLLHRSTYIFARNSQGQ------YYVQKRTMLKDYCPGYYEVVAGGVVGAGETYAENADREAEEELGIPPSA-----------EKEHLFTFLYQDERIRVFGDAWEVVWDGALTLQKEEVESVHPMTLEEVFI-RVEAGDKF--TPDSLYATRKYLDFLREKGEK 175
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A024US12_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US12_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.010e-40
Identity = 87/194 (44.85%), Postives = 111/194 (57.22%), Query Frame = 3 
Query:   57 LDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAETKEK 638
            L A E++AIV +  N V G A R+ MR   LPHRATY+ I+   G      D +VQ+RTMIKDYCPG LDP  GGVV  GESYEDNA RE EEEMGV                L +  +F Y + +T VWG  ++CV+ G++  QPEEV  V   S ++++A  +      E TPDG+ A+  Y DW A    K
Sbjct:   12 LTAREQVAIV-DLDNNVVGKADRSVMRVFTLPHRATYIVIRNSAG------DFYVQRRTMIKDYCPGFLDPMAGGVVQAGESYEDNAIREAEEEMGVSGV------------PLTYVTTFLYNESYTVVWGGMFECVYDGQLKLQPEEVSEVLIMSAADIMARAN------EFTPDGIFAMRLYLDWKAHDASK 180
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BLAST of Ec-28_002140.1 vs. uniprot
Match: A0A2P4WYN3_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYN3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.830e-40
Identity = 83/170 (48.82%), Postives = 101/170 (59.41%), Query Frame = 3 
Query:   99 NEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKY 608
            N V G A RA MR  NLPHRA+Y+ I+   GE       +VQ+RT IKDYCPG+LDP TGGVV +GES E NA RE EEEMGVK T             LR+  +F+Y DDH+ VWG  +DC +   +V Q EEV  V   +  E++A R       E TPDG+ A EKY
Sbjct:   31 NNVIGKADRAVMRAFNLPHRASYIVIKNSSGE------YYVQRRTKIKDYCPGMLDPMTGGVVQYGESMELNAEREAEEEMGVKNT------------PLRYLTTFYYDDDHSRVWGGLFDCTFDDPLVLQEEEVDEVLMMTADEILARRS------EFTPDGIFAFEKY 176
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BLAST of Ec-28_002140.1 vs. uniprot
Match: K3WIM4_GLOUD (Nudix hydrolase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIM4_GLOUD)

HSP 1 Score: 150 bits (379), Expect = 1.190e-38
Identity = 82/184 (44.57%), Postives = 103/184 (55.98%), Query Frame = 3 
Query:   57 LDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFIQAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRELEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGGEIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKY 608
            L A E + IV +  N V G + R+ MR  NLPHRA+Y+ I+   G        +VQ+RTMIKDYCPG LDP  GGVV + ES+EDNA RE EEEMGVK               L H  +F+Y+D  T VWG  ++C + G +  Q EEV  V   S  E++  R       E TPDG+ A EKY
Sbjct:    3 LSAKEEVCIVDKDNN-VVGKSDRSVMRAFNLPHRASYIVIKNSSGA------YYVQRRTMIKDYCPGYLDPMAGGVVQYDESFEDNAAREAEEEMGVKGV------------SLTHVSTFYYEDQRTRVWGGLFECTYDGPLTLQVEEVDEVLEMSADEILQRRG------EFTPDGIFAFEKY 161
The following BLAST results are available for this feature:
BLAST of Ec-28_002140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL3_ECTSI6.010e-144100.00Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A0P1A6C5_PLAHL2.170e-4347.83Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A067CR68_SAPPC3.680e-4144.62Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A1V9Z936_9STRA6.820e-4145.95Nudix hydrolase domain-containing protein n=1 Tax=... [more]
G4ZW50_PHYSP1.020e-4046.28Nudix hydrolase domain-containing protein n=34 Tax... [more]
A0A3R7H0D8_9STRA1.020e-4046.63Nudix hydrolase domain-containing protein n=3 Tax=... [more]
A0A4D9CX45_9STRA1.340e-4044.85Nudix hydrolase domain-containing protein n=4 Tax=... [more]
A0A024US12_9STRA5.010e-4044.85Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A2P4WYN3_9STRA5.830e-4048.82Nudix hydrolase domain-containing protein n=1 Tax=... [more]
K3WIM4_GLOUD1.190e-3844.57Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1965825..1970324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.1
Seed ortholog evalue1.2e-117
Seed eggNOG ortholog2880.D7FXL3
Length2040
Hectar predicted targeting categoryother localisation
Gene idEc-28_002140.1
EggNOG free text desc.hydrolase
EggNOG OGs2ARP2@1,2RZMS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_002140Ec-28_002140Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1965825..1970324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002140.1Ec-28_002140.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1965852..1968926 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002140.1.1Ec-28_002140.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1965825..1965959 +
Ec-28_002140.1.2Ec-28_002140.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1967322..1967463 +
Ec-28_002140.1.3Ec-28_002140.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1967982..1968199 +
Ec-28_002140.1.4Ec-28_002140.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1968780..1970324 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0021405UTR:Ec-28_002140.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1965825..1965851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_002140.1CDS:Ec-28_002140.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1965852..1965959 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0021403UTR:Ec-28_002140.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1968927..1970324 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_002140.1 ID=Ec-28_002140.1|Name=Ec-28_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=205bp
MSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFI
QAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRE
LEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGG
EIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAE
TKEK*
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spliced messenger RNA

>Ec-28_002140.1 ID=Ec-28_002140.1|Name=Ec-28_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2040bp|location=Sequence derived from alignment at chr_28:1965825..1970324+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCGTGTGTCCTTCTCTCCTGCAGCATGTCAGCGGTGGCGAACCCAGA
GAGCGGCTTGGATGCAGATGAGAGAATCGCGATCGTGAGTGAGAGCACCA
ACGAGGTCACCGGCTCCGCACGCCGGGCCGAGATGCGCCGAGACAATCTA
CCGCATCGCGCAACGTACGTCTTCATTCAAGCTCCGGGTGGCGAGAGCGA
GAAGAACCCAGATCTCTGGGTGCAGAAAAGAACGATGATCAAGGACTACT
GCCCAGGCCTGTTAGATCCCAGCACAGGAGGCGTGGTGGGACACGGCGAG
AGCTACGAGGACAACGCGAGGCGGGAGTTGGAGGAAGAGATGGGCGTTAA
GGCGACAGGGGGGACGGGGGAGGGTGGTGGGAGGGCCGAAGGCGAGCTCC
GGCATTGCTTCTCGTTCCACTACAAGGACGACCACACCAACGTTTGGGGG
GACGCGTGGGACTGTGTATGGGGAGGGGAGATCGTCCCTCAGCCGGAGGA
AGTGCAGAGCGTTCACCGCTACTCGCTGTCGGAGCTCATCGCCGGCCGGG
ATAAGGCGGGCGAGAAGCTTGAGTCCACGCCCGACGGGGTGATCGCTCTG
GAGAAGTACCGGGATTGGCTCGCGGAAACGAAGGAGAAGTAGGAAGGTGT
TTCTTCGTTGTGGGTGGCATGCTTCTTTCGCCCCTCATTCTTGGTCTCGG
TCTTTCTACATACATACCGGGGTCCCGTCGCCTGGTATCGGTCCCTGCCC
AGTGCTGTTTTCGATGTTTGGTTCTTCGCTACGAAACGCACTGCTGACTT
TCTCGACCCGGGTACAACGGATAAAAGGGTCAATTTCCACACACCCACTC
CCCCACCCCGTTTTCTACCTGCCTAAGCATGACCATGCGTCAAGTGTGAA
GAATTAGTCGCCAACTGTATGGTGATAGATGCTATTTCGTGAGGATGCGA
TAGTCGTTGTCTCGTGGGACCAGTATTTTCAATTGTGTCGATGATTTGGA
AGAACAAGAGAGGCCTTTATCCACCACGCGACCGGCCCAAAAAAACAGGG
CGTCCTTTCGCGGATATGGTTCGTTCTTTCCACGAAGAAAGGTGGTGGTC
GATTCTGGCTGGCAGAAAGAAGAGCTAAGTGGGTCGGGTGTTGTTTAATG
CGACAGAATCGTGATCCACGGTGTGAATAGTAGGTGTTTCGCATTTTCTG
TGAGACATAACGCGGCATTATCGAGAGGTGGGTGGATCGGCGAGAGTTGG
AACGCATCCTCTTCGTGCTTTTGACGATACTTGAAATACTTTGTTGCTTG
TTGGTGGAGGAGATATGGTAAGGTATTTGGTAGCGCCCACCGAGAAGAAA
GCTTTTGTTGAAATTCAATGCACTAAAGAGTACACAGAGTAGGGTTTGAT
ACTTCTGTGTTATTTGTCCTGAGCGGCAAGTTGTGGTAGCATCACGCGAC
CCGTTTCGTGTGTCTACCTTACGCTGGCACTTTTGTCTTGGTTTGATGGG
GTTGATTTCGTGGCAGGAGGTGGAAGCCGTGGAGAGACTCTCGCGCCACA
AGTAAGTTGATTTCGTTGCGAGAGGCGGGATAGTCTAAGCGTTGAAAAAA
AATGCGTTACATTATCGTGGTGGTGGCACATGTAGTCTCTTACAGCCGTG
ATGAAGTCGCGGCTATGTACCCTCGCAAACATGCAGTCTACACGGTAGTT
GTCGTTTCGACACTGACAATTTGTCCAACTGTACTGAAAATGAAGCCAAG
CCTCTGTGTTGTTCCCGCCATCCGTCTCTGCTGGAAAATACACACGTACG
TGTCGGGTGCACACATGTGATTTTGACATGTATCTTCGAAACCTGTGAGG
TGGGGTTGACTTCGTGTCGATGTTTTTGTAGGAGAGTTCTGTGTGCTTTG
TATCAGCCTCCCGTGGAGAGTGTCAACCGCTGAGCAACCCCGATCGCGCA
ACAGCAGTATTTGCCGTCAAGCGAGAGCCCGAACCCGGAGCGTTTTTTTT
TTTTTTTTTTGCTTAACTATCATAGAAAAGAGTCTGAGAC
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protein sequence of Ec-28_002140.1

>Ec-28_002140.1 ID=Ec-28_002140.1|Name=Ec-28_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=205bp
MSAVANPESGLDADERIAIVSESTNEVTGSARRAEMRRDNLPHRATYVFI
QAPGGESEKNPDLWVQKRTMIKDYCPGLLDPSTGGVVGHGESYEDNARRE
LEEEMGVKATGGTGEGGGRAEGELRHCFSFHYKDDHTNVWGDAWDCVWGG
EIVPQPEEVQSVHRYSLSELIAGRDKAGEKLESTPDGVIALEKYRDWLAE
TKEK*
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mRNA from alignment at chr_28:1965825..1970324+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_002140.1 ID=Ec-28_002140.1|Name=Ec-28_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4500bp|location=Sequence derived from alignment at chr_28:1965825..1970324+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TTGGCGTGTGTCCTTCTCTCCTGCAGCATGTCAGCGGTGGCGAACCCAGA
GAGCGGCTTGGATGCAGATGAGAGAATCGCGATCGTGAGTGAGAGCACCA
ACGAGGTCACCGGCTCCGCACGCCGGGCCGAGATGGTGAGTCTTTCGACT
GATGTAGCATACATGACAGCTCAAAAGACGGCAGCGCACCCTTGGGGGGA
GGGGGGGGGGGTTACACGAGTCAATAAGAAAGGCTGAGCTGTGCATCGTG
TGATATGAGTGCGGCGGTAGCTAAGCGGACACTCGAGCTCCAGCTCGTCC
GAGATCTGCTTGATTGCAGTGTTGCAGTGTCTAAGAGGAAGATGTCTACA
GCACTATTGGCTACATACTTCCAAACAAAGAGTCCCACCGCAACACATTT
AGGCAAAACAGGCGTGCCTCGGTCGTGTTGGCACAACTGGAGGGTGTACG
GTATATGCGGTGGGTACATACACGTGATACGCAGAATATGTTGTGGCTTT
ATTGCGATAACAACGGAGGGGTAAATAGCAAAGGTGATTTCGCTGTGCCT
AAATTTTATTCCGATTTTATTTCTGCATCAACTGCTGTGAGGGTGTGCTG
AGGCGAATGTCCCCACTGTTTCTAAGTCTTTTCCCCCCCGTTGTTGTTGT
TGTCTCTCGCAGTTTCCAACTACCCCTGCGGCAGCTTTGTCTCCCTATAG
CCTTAAATATTTTGGTGATATGGAGCCTGAGCGTATTTTCCTGGAAGGCA
GTACTGTAGTTTCCCAACAGAGAAGAGAGTTAACTAGACTTGCAGCTGAG
ATCTACACCTCCGGCACCCTTCTGTGCAAGAGGCATACCATCAACAGCAA
CAGCAGGCTCACCCGGCAGAGGCCAAGCTTTGAGTCCTTATCTACACAAA
TTTAGAGGTAGATTCGTGGTCGTCGGGAGTCGACGTTCAACATCATCTTT
GCAGGCAGACTGTTTCGGATTGGGTGGAGGAAAATGTTTGTCGGAAGGAG
TTCGAGATGCCTTCGTTACTCCGGAGTTTTTTTTCAACTTGTGCGACTAA
AGCGCGGGCGGACTGCTGTTTTCTCTAGGTTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTC
AATGTGCGCACACATCGCTCCCCCCTTCCTGCCATCACCCAACTCTTCTC
AAACAATCAAAGTGCGTGGGCACAACCATCAATTCAGTGAAACACACAGG
TCGGAATGGACAGAAGCTCAGCAACCAAATGAAAGGGCCCTCACCCCCCC
ACCCCCCCCTTCCCCTACCGCACGCCTGTCCGCGTGTCCCCTCGCAGCGC
CGAGACAATCTACCGCATCGCGCAACGTACGTCTTCATTCAAGCTCCGGG
TGGCGAGAGCGAGAAGAACCCAGATCTCTGGGTGCAGAAAAGAACGATGA
TCAAGGACTACTGCCCAGGCCTGTTAGATCCCAGCACAGGTGCACCTGGC
CTGGCGGGGGGGGCGTAGAGAGTAGGGGTAAAGGAGACAGAGGCATATTA
CCAATCATTTTTACGGGGGAAGGTGGTAATTGACTAGGATGTTGTAGCAT
AGGGGAAACTTGCTCGAGTATGCGCGTCCGAGGAAATATGTCTCCATGCA
GGGCCGTGAGGGGGGTAGATACGCTAATTGGCTTGAGAACCATTGCCGAA
AGCTTTCCCGTGGATATTCGGATCCCGTAGAAGAGAAGCAATGGGACGGG
ATGCGATGTGCCTGGAACAACGGAAGGGTGGAGGTTCTCTGTATTGGTAG
CGCTAGGTTCCGCGACAAGCCGAGGAAGCCGTTCAGGCGAGGTAATGAAC
CGATATACGAATCAGCACGACCACAGCATCACCGCAACGATAACAACAAC
AGCGACAACAGTTTCAACAACAACCATTACTCACGTTAAAATACAAAGCC
CGACCAAGACCTGCCGCGCCCGCGAATCGCAACCATCCCTCCCGTTCGTC
CCAACAGGAGGCGTGGTGGGACACGGCGAGAGCTACGAGGACAACGCGAG
GCGGGAGTTGGAGGAAGAGATGGGCGTTAAGGCGACAGGGGGGACGGGGG
AGGGTGGTGGGAGGGCCGAAGGCGAGCTCCGGCATTGCTTCTCGTTCCAC
TACAAGGACGACCACACCAACGTTTGGGGGGACGCGTGGGACTGTGTATG
GGGAGGGGAGATCGTCCCTCAGCCGGTGGGTGTGCGTACTCTCATGTTTT
GCACGCCTTGCCGGTTATAGACCATTGACCACGCGTCCTCGAGAAGCCGG
ATCATTGTTTCCACAGGAACCGATCACCACTCGTTCCTTCCTACTTTTCC
CCAGGGTGGCTAAAAAAACTATACCTTTCCCATCGATATCACTTCCCGAC
TTTTTTTAGCCCACTTCCTATGCCCCAGTACATAGCTACCTGTTGCTGAC
GAATTTCATTTCGATGAGCCATGGCGACGACGAGTACGTCTTCTTGCTGC
GTGCCTTTGCCACGCTGTAGACCTTCGTTGTGATGTTGGAGGCGACACCA
CTGCTGCTAGCGTGTTTGTCGTCGTGGGTGGTGGGCTTGGATTGGAACGT
TCAACAGTCGGGTTTTACTGGCGGACGCTGTCGACAGCCCTGTGGTGTAT
GTATACCTATCGGTGGGTTTTCCTGCGGCTTTTTCTTGTTCGCGCGACAC
TTCTTTCGGGAAGGCCACGAAGCGTCCTGGCGGTGGGCCGAGGCCGATGT
GTTTTTGTGGACAACACTTTTGCCTCTGCCTTTCCCCGCTCTGTCCACCC
CGCAGGAGGAAGTGCAGAGCGTTCACCGCTACTCGCTGTCGGAGCTCATC
GCCGGCCGGGATAAGGCGGGCGAGAAGCTTGAGTCCACGCCCGACGGGGT
GATCGCTCTGGAGAAGTACCGGGATTGGCTCGCGGAAACGAAGGAGAAGT
AGGAAGGTGTTTCTTCGTTGTGGGTGGCATGCTTCTTTCGCCCCTCATTC
TTGGTCTCGGTCTTTCTACATACATACCGGGGTCCCGTCGCCTGGTATCG
GTCCCTGCCCAGTGCTGTTTTCGATGTTTGGTTCTTCGCTACGAAACGCA
CTGCTGACTTTCTCGACCCGGGTACAACGGATAAAAGGGTCAATTTCCAC
ACACCCACTCCCCCACCCCGTTTTCTACCTGCCTAAGCATGACCATGCGT
CAAGTGTGAAGAATTAGTCGCCAACTGTATGGTGATAGATGCTATTTCGT
GAGGATGCGATAGTCGTTGTCTCGTGGGACCAGTATTTTCAATTGTGTCG
ATGATTTGGAAGAACAAGAGAGGCCTTTATCCACCACGCGACCGGCCCAA
AAAAACAGGGCGTCCTTTCGCGGATATGGTTCGTTCTTTCCACGAAGAAA
GGTGGTGGTCGATTCTGGCTGGCAGAAAGAAGAGCTAAGTGGGTCGGGTG
TTGTTTAATGCGACAGAATCGTGATCCACGGTGTGAATAGTAGGTGTTTC
GCATTTTCTGTGAGACATAACGCGGCATTATCGAGAGGTGGGTGGATCGG
CGAGAGTTGGAACGCATCCTCTTCGTGCTTTTGACGATACTTGAAATACT
TTGTTGCTTGTTGGTGGAGGAGATATGGTAAGGTATTTGGTAGCGCCCAC
CGAGAAGAAAGCTTTTGTTGAAATTCAATGCACTAAAGAGTACACAGAGT
AGGGTTTGATACTTCTGTGTTATTTGTCCTGAGCGGCAAGTTGTGGTAGC
ATCACGCGACCCGTTTCGTGTGTCTACCTTACGCTGGCACTTTTGTCTTG
GTTTGATGGGGTTGATTTCGTGGCAGGAGGTGGAAGCCGTGGAGAGACTC
TCGCGCCACAAGTAAGTTGATTTCGTTGCGAGAGGCGGGATAGTCTAAGC
GTTGAAAAAAAATGCGTTACATTATCGTGGTGGTGGCACATGTAGTCTCT
TACAGCCGTGATGAAGTCGCGGCTATGTACCCTCGCAAACATGCAGTCTA
CACGGTAGTTGTCGTTTCGACACTGACAATTTGTCCAACTGTACTGAAAA
TGAAGCCAAGCCTCTGTGTTGTTCCCGCCATCCGTCTCTGCTGGAAAATA
CACACGTACGTGTCGGGTGCACACATGTGATTTTGACATGTATCTTCGAA
ACCTGTGAGGTGGGGTTGACTTCGTGTCGATGTTTTTGTAGGAGAGTTCT
GTGTGCTTTGTATCAGCCTCCCGTGGAGAGTGTCAACCGCTGAGCAACCC
CGATCGCGCAACAGCAGTATTTGCCGTCAAGCGAGAGCCCGAACCCGGAG
CGTTTTTTTTTTTTTTTTTTGCTTAACTATCATAGAAAAGAGTCTGAGAC
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Coding sequence (CDS) from alignment at chr_28:1965825..1970324+

>Ec-28_002140.1 ID=Ec-28_002140.1|Name=Ec-28_002140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=615bp|location=Sequence derived from alignment at chr_28:1965825..1970324+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAGCGGTGGCGAACCCAGAGAGCGGCTTGGATGCAGATGAGAGAAT
CGCGATCGTGAGTGAGAGCACCAACGAGGTCACCGGCTCCGCACGCCGGG
CCGAGATGCGCCGAGACAATCTACCGCATCGCGCAACGTACGTCTTCATT
CAAGCTCCGGGTGGCGAGAGCGAGAAGAACCCAGATCTCTGGGTGCAGAA
AAGAACGATGATCAAGGACTACTGCCCAGGCCTGTTAGATCCCAGCACAG
GAGGCGTGGTGGGACACGGCGAGAGCTACGAGGACAACGCGAGGCGGGAG
TTGGAGGAAGAGATGGGCGTTAAGGCGACAGGGGGGACGGGGGAGGGTGG
TGGGAGGGCCGAAGGCGAGCTCCGGCATTGCTTCTCGTTCCACTACAAGG
ACGACCACACCAACGTTTGGGGGGACGCGTGGGACTGTGTATGGGGAGGG
GAGATCGTCCCTCAGCCGGAGGAAGTGCAGAGCGTTCACCGCTACTCGCT
GTCGGAGCTCATCGCCGGCCGGGATAAGGCGGGCGAGAAGCTTGAGTCCA
CGCCCGACGGGGTGATCGCTCTGGAGAAGTACCGGGATTGGCTCGCGGAA
ACGAAGGAGAAGTAG
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Synonyms
The feature 'Ec-28_002140.1' has the following synonyms
Synonym
Esi0033_0092
Esi_0033_0092