Ec-28_001960.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-28_001960.2
Unique Name	Ec-28_001960.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	127

Homology

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BLAST of Ec-28_001960.2 vs. uniprot
Match: A0A6H5K0K8_9PHAE (NADH-u_ox-rdase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0K8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.240e-22
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1

Query:   97 MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGAKG 243
            MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKG KG
Sbjct:    1 MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGVKG 49

The following BLAST results are available for this feature:

BLAST of Ec-28_001960.2 vs. uniprot

BLAST of Ec-28_001960.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5K0K8_9PHAE	1.240e-22	97.96	NADH-u_ox-rdase domain-containing protein n=2 Tax=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:1748614..1752817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2753
Hectar predicted targeting category	other localisation
Gene id	Ec-28_001960.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_001960	Ec-28_001960	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_28 1748612..1752817 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_001960.2	Ec-28_001960.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_28 1750958..1751338 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_001960.2.1	Ec-28_001960.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 1748614..1748667 +
Ec-28_001960.2.2	Ec-28_001960.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 1749727..1749909 +
Ec-28_001960.2.3	Ec-28_001960.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 1750302..1752817 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_001960	5UTR:Ec-28_001960.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_28 1748614..1748667 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_001960.2	CDS:Ec-28_001960.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_28 1750958..1751338 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_001960	3UTR:Ec-28_001960.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_28 1751339..1752817 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_28:1748614..1752817+
coding sequence from alignment at chr_28:1748614..1752817+

mRNA sequence

>Ec-28_001960.2 ID=Ec-28_001960.2|Name=Ec-28_001960.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=127bp
MTTCCPQRDWEFSLPWPIFSARPLLSFYVGPRIIIAQGCLFSPIVTTEEM
RVAKIISALLLRIIAAHRRGRREWLCFGLTRGRMISSPRESPSTRSTCAD
VPGDGVPLVRSAVSPTPCTMNSSHLW*

spliced messenger RNA

>Ec-28_001960.2 ID=Ec-28_001960.2|Name=Ec-28_001960.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2753bp|location=Sequence derived from alignment at chr_28:1748614..1752817+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CACACAGCTAGCTTTGTGGCGTAACTCGCGAACGAGCTCCTTCATCACTG
GAAGGAGAGAGCCGCATCCCCCAAATCAGAGTGGGACAGCGAGAAGAGAT
GGCCTTCGAGGACCCTAAGTTTCCGGTCACAGACCCGGCGCCGGGCATGG
GGACGGTGTTCGGCAACTTGAATGCGACGGATGTTGCGACTGTAGTGGTG
GCTACGGCGGGCTCGGCAGCATGGTGCTTCAAGGGAGTCAAAGGGGTTCG
CGGACCGAACGCAGTAGTGGGAGCCAGTCTGGGTTTGATGGGGGGATTGA
TGTTGGCCGGTCAGAGCTCATTCGGACGGCTCACGGGGCAGCGGAAGTGA
AGACACATGTATTTGTTTCGGAACCAGGGTGTTTTATGGCGGTGGACAAG
CTGGCGGCCAATGGAAGCCATGAAGGGGGGGGGTTCTCGCGGGACAACTA
TATTTGTTAGAGAAATGAGTCAAACCCGGGAGAGTCACCAGAATGTCCCC
GGTCGTTCAGACCGTTCTTGATTCAGCGTCCAGTGGTAGGCGACACCATT
ATTTTTCTTCGTTTTGCATCAGTCTTACCTGATAAGTGGAGCGGGGGGCC
AAGCTACTCGGAAGCAACCAGCTTCCCTTGGTTTTTGCAGTCTATGCTGC
GTAGAGTGCCACGCATGGTCAATCAAGCGTTGCTGGAAGGTTATGTATCT
GTCTTTGCTGGCTTGCATGGGCATCAGCGGCAAGGCGATAGGATGGAGAA
GATAGTGGAGGTGGCGGAACCTTGGGAGCATGTGGTAGCAGCCAACGCCG
ATTGCTTGTCTGCGAAGCAGCGACGGTGGTCGCCAAGACGTGCAAGACTT
GTTTCTGTCTGGCCACTGTGTTGACACCAAGTTTTCCTGGGGCATGACAA
CGTGTTGTCCGCAGAGGGATTGGGAATTTTCTCTCCCGTGGCCGATTTTT
TCCGCGCGTCCTTTGTTGAGTTTTTATGTTGGACCGCGGATTATTATTGC
TCAGGGTTGTCTTTTTTCGCCCATCGTGACAACGGAGGAGATGCGGGTAG
CAAAAATAATTTCAGCTCTTTTGCTAAGAATAATTGCAGCCCATCGAAGG
GGCAGGCGTGAATGGCTCTGTTTTGGGCTTACCCGGGGGCGTATGATCAG
CAGTCCGCGCGAAAGCCCATCGACAAGAAGCACGTGCGCTGATGTCCCTG
GTGATGGCGTTCCGCTCGTCAGGTCTGCCGTTTCCCCGACGCCGTGTACG
ATGAATTCCTCCCACTTATGGTAACGTCGTTTGTTTTATCCTTTGCGAAA
TAAACGTTGAAACACGTAATTTTCTGTCGTCTACTCTTGATGCTTTGCCG
TTCTGTCGACTACGGCCGTCGATGTCGTCCTGCGGCACTCGATCAAACAC
CAACAGCAGGCGGCGCCGAAACCCACCGATATACGCAATCCTTGACGCGG
TCTTGCATCTGGTCGCTTTTGTAAGCATCACGCGCGGCCGACTGTATGAT
GTGTGTGGCGTCGTCCCGTGTATCTGTGGGTGCCATTCTAGTCCGACACA
TGTCAATGTGTTTTTGACCCACCGGCAGGGGTCAGGCAGCGGAAGGAAGG
CAATCGCTGGCTCTCATCTTTTTCTTCTTGTGGGTAGATCCGGATTTTTT
TGCATGTCCCTGACCCCAACGGAAGCCCGATAACATTGCCTGCCTCGCAA
ACACAAGTCATCGCAGTCGTGGGAAGGGAAAACCAGGAGGTTTCCCTACT
CGCGGCTTATCGTTTAAAGGTGACTTTCCCGCAGAACTGGAGGATCAGTT
CTCAGCTCAAACCCAACCTGCGACTCTACTCGCGGAGTATGGGTTTCAAG
ATCACTTTCCCGCTTAACTGCAGGATCACCTCAAACCTTAAAACCGCGAC
GCAAGCTCTTACATGCCGCAATGACAGCACCCACACGACGGGATGCGTAT
CGCCCAGGAACCAGCGCTGTGCAATGCAAAAGGCGAAAGGAGCTCTTGTC
GTCGCTCGGCACGGAAACTACTACGGTAGCACGCCTTGGGATGTACCGAA
GACCTGATAAGCCGAAACAGCAATTATAGCTAACTCCGCCTCCACCTACG
TTATCCTGGTGTGCTATTCCGCCATGTTCCGTCGCTCGCGCGCAGGAGTT
TCCATGTTTCCATTGCACCCTGCGGTGTAGCCTGTCGACCCACAAGGGCT
TCGATCCCGGGAACAAGAAAACGGGAGATCACATCCTTCTTACGATCGAA
GAAACGAGGCACATCGACACCCGACAAACACGCCACCGCACACCGCGACC
TTCCAACTTCAACTTCTCAGGCATCCGTCCTGGACTCATTGGACACGGGG
AACGGGGCTGCCGTACATAATGGCGAATGCAGCACACCAAGCAGCGGAAT
CCTTTCTATTCGGAAAGAGGCTGCTGTCGAGCGCACCGAAATACTTCTTG
CCAGGTGCGTGTCCCCCGAAAACGAAAACGGGGGCACAACCCAACCCAAC
CCGTTGTAGAGAAAAATGGAATCGCTGCGTTGTCCGGACTGCTGCTCAGC
ATCCGCGTCCGCCCCCGCTCATCTACCCGTGATACGTACCGCCGCCAATC
CTGTCACAGCACTCTGTTCCTCCATCTCTCTGGAGCACGAACCGCGCGCG
CCGCCTCCTTTCTTCCGGTTCCCTCACTCCAGCATAAAAAAACAACTAAA
TCTACACACGCCAAGTGAACACAAACATCCCGCTATTGCAAGACCGACGT
CGT

protein sequence of Ec-28_001960.2

>Ec-28_001960.2 ID=Ec-28_001960.2|Name=Ec-28_001960.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=127bp
MTTCCPQRDWEFSLPWPIFSARPLLSFYVGPRIIIAQGCLFSPIVTTEEM
RVAKIISALLLRIIAAHRRGRREWLCFGLTRGRMISSPRESPSTRSTCAD
VPGDGVPLVRSAVSPTPCTMNSSHLW*

mRNA from alignment at chr_28:1748614..1752817+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-28_001960.2 ID=Ec-28_001960.2|Name=Ec-28_001960.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4204bp|location=Sequence derived from alignment at chr_28:1748614..1752817+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CACACAGCTAGCTTTGTGGCGTAACTCGCGAACGAGCTCCTTCATCACTG
GAAGGTCAGTCCGGAAAGAAGCATGTGCGAGGATGTGTTTTGCTGTCGCT
GTGTGAATAGCTATCCTCCAAAGCTCAGAGGCCCTGTGTCACATTTGCCT
CGTGCATTGCCCCCTCAGTTTCAAGAAACGAGTTGTGTGCACGACAAACA
CACAGCTGCCACCGCCGCCGCAGCCCCGGCAACAGCAGGAACCAACCGAG
TTGACCTGAAGTGGCACATTCTGCAAAGCCGATAGGCATGCTGATCACTA
TGTTGTGCTTTGTCTAGCAGCCTCGGAGCATGAGGTCTTCTCCTCGGAGC
CCGTGCGTAACACCACCTCCCGTAGTTGCAGGGAGATAGCAGTACTACGT
ACCTGGTATACAGCTTTCGAGGCGCCCGGTATCTCTCGGGGTTGTTGGTA
TCTTGCCGAACCTTCGTTTACAAAACGGGCACATGTGTAGATAGCAGAAG
CGTTGGTTGCTGCGTACAACATCTGCTATGTGCGACCATGCCCGGTGGAG
GTGCTCAGGTGTTATTCCGCCGCATCCTGACAACGTCGGAAATGGGAGAC
AAGGCCCTGGGCGATGTGATGATGTAGCCCTCATTTCCAGAAGAGAGGGC
ACACCATGGTCAAAATTCGAATCGAAGCAAGCTCATTCTCAACCCTAGTC
CGAGCGCCGGGCGCAACGGGATATGTCACCTCGTGAAACCCAGTGGTGGC
ATGAGCCATTCCTAATGTACGCTTCGTGCACAGCAGTTTGGCAGCAGGAA
CCATGGAAGCAGTGAGTAGACCGCATCCTCTGCGACTCCACCTTATGCCC
CTACTGCATTCCAATACCTGCGCCTGCCAAGGGGTTGGACACGTACTGAC
AGGGTTGCGCAGGTGCACGCCACATAAGGCTCGATTGCATCATCAATCCA
GCTGTGCACCCCCCGGTACCAAAGTACGGCAGGGAGCGCCGCATATACAT
ATACACATGCATGCTGCTCATTTGAGCGCCCCTCCTGTGTACGTACTCCT
AGATCTCACTCTACTGTGGACATTTGTCGTGTATGTATCTCCCTGTGTGC
CTTGGTTTCGCAGGAGAGAGCCGCATCCCCCAAATCAGAGTGGGACAGCG
AGAAGAGATGGCCTTCGAGGACCCTAAGTTTCCGGTCACAGACCCGGCGC
CGGGCATGGGGACGGTGTTCGGCAACTTGAATGCGACGGATGTTGCGACT
GTAGTGGTGGCTACGGCGGGCTCGGCAGCATGGTGCTTCAAGGGAGGTGA
GGTTCGCTGATTTCTCATTGCCGAAACGTTTTCGCCCGAGATAGTCTCGC
CAACAACAAGAAACAATGCCAGATTTCGTACTTTGGAAACATAATCTTGG
GTATGTTCTGCACATGAAAAAACATGCACCGTTCATGTACCAATCGGAGA
CACGATTGAACAAGATCATGTTTGCGCGATACGCGTTTCTGGCGAGAGGC
CTAGCGTACCACCACCCCCCTGTTGCCACGGTGCCCCCCCTCATCCTCTC
GTCTGGCTTTCCGCGTACAAACGCCTGTGCGGGTTCATTTGATGTCCCAT
CTGAATGAGCGTTTGTCGTCATACCAACCCTCCCCCGCTCTCCTTCTCCT
TGACGTTGCCCGATTTTGCGATCTCATGAAAACAACAGTCAAAGGGGTTC
GCGGACCGAACGCAGTAGTGGGAGCCAGTCTGGGTTTGATGGGGGGATTG
ATGTTGGCCGGTCAGAGCTCATTCGGACGGCTCACGGGGCAGCGGAAGTG
AAGACACATGTATTTGTTTCGGAACCAGGGTGTTTTATGGCGGTGGACAA
GCTGGCGGCCAATGGAAGCCATGAAGGGGGGGGGTTCTCGCGGGACAACT
ATATTTGTTAGAGAAATGAGTCAAACCCGGGAGAGTCACCAGAATGTCCC
CGGTCGTTCAGACCGTTCTTGATTCAGCGTCCAGTGGTAGGCGACACCAT
TATTTTTCTTCGTTTTGCATCAGTCTTACCTGATAAGTGGAGCGGGGGGC
CAAGCTACTCGGAAGCAACCAGCTTCCCTTGGTTTTTGCAGTCTATGCTG
CGTAGAGTGCCACGCATGGTCAATCAAGCGTTGCTGGAAGGTTATGTATC
TGTCTTTGCTGGCTTGCATGGGCATCAGCGGCAAGGCGATAGGATGGAGA
AGATAGTGGAGGTGGCGGAACCTTGGGAGCATGTGGTAGCAGCCAACGCC
GATTGCTTGTCTGCGAAGCAGCGACGGTGGTCGCCAAGACGTGCAAGACT
TGTTTCTGTCTGGCCACTGTGTTGACACCAAGTTTTCCTGGGGCATGACA
ACGTGTTGTCCGCAGAGGGATTGGGAATTTTCTCTCCCGTGGCCGATTTT
TTCCGCGCGTCCTTTGTTGAGTTTTTATGTTGGACCGCGGATTATTATTG
CTCAGGGTTGTCTTTTTTCGCCCATCGTGACAACGGAGGAGATGCGGGTA
GCAAAAATAATTTCAGCTCTTTTGCTAAGAATAATTGCAGCCCATCGAAG
GGGCAGGCGTGAATGGCTCTGTTTTGGGCTTACCCGGGGGCGTATGATCA
GCAGTCCGCGCGAAAGCCCATCGACAAGAAGCACGTGCGCTGATGTCCCT
GGTGATGGCGTTCCGCTCGTCAGGTCTGCCGTTTCCCCGACGCCGTGTAC
GATGAATTCCTCCCACTTATGGTAACGTCGTTTGTTTTATCCTTTGCGAA
ATAAACGTTGAAACACGTAATTTTCTGTCGTCTACTCTTGATGCTTTGCC
GTTCTGTCGACTACGGCCGTCGATGTCGTCCTGCGGCACTCGATCAAACA
CCAACAGCAGGCGGCGCCGAAACCCACCGATATACGCAATCCTTGACGCG
GTCTTGCATCTGGTCGCTTTTGTAAGCATCACGCGCGGCCGACTGTATGA
TGTGTGTGGCGTCGTCCCGTGTATCTGTGGGTGCCATTCTAGTCCGACAC
ATGTCAATGTGTTTTTGACCCACCGGCAGGGGTCAGGCAGCGGAAGGAAG
GCAATCGCTGGCTCTCATCTTTTTCTTCTTGTGGGTAGATCCGGATTTTT
TTGCATGTCCCTGACCCCAACGGAAGCCCGATAACATTGCCTGCCTCGCA
AACACAAGTCATCGCAGTCGTGGGAAGGGAAAACCAGGAGGTTTCCCTAC
TCGCGGCTTATCGTTTAAAGGTGACTTTCCCGCAGAACTGGAGGATCAGT
TCTCAGCTCAAACCCAACCTGCGACTCTACTCGCGGAGTATGGGTTTCAA
GATCACTTTCCCGCTTAACTGCAGGATCACCTCAAACCTTAAAACCGCGA
CGCAAGCTCTTACATGCCGCAATGACAGCACCCACACGACGGGATGCGTA
TCGCCCAGGAACCAGCGCTGTGCAATGCAAAAGGCGAAAGGAGCTCTTGT
CGTCGCTCGGCACGGAAACTACTACGGTAGCACGCCTTGGGATGTACCGA
AGACCTGATAAGCCGAAACAGCAATTATAGCTAACTCCGCCTCCACCTAC
GTTATCCTGGTGTGCTATTCCGCCATGTTCCGTCGCTCGCGCGCAGGAGT
TTCCATGTTTCCATTGCACCCTGCGGTGTAGCCTGTCGACCCACAAGGGC
TTCGATCCCGGGAACAAGAAAACGGGAGATCACATCCTTCTTACGATCGA
AGAAACGAGGCACATCGACACCCGACAAACACGCCACCGCACACCGCGAC
CTTCCAACTTCAACTTCTCAGGCATCCGTCCTGGACTCATTGGACACGGG
GAACGGGGCTGCCGTACATAATGGCGAATGCAGCACACCAAGCAGCGGAA
TCCTTTCTATTCGGAAAGAGGCTGCTGTCGAGCGCACCGAAATACTTCTT
GCCAGGTGCGTGTCCCCCGAAAACGAAAACGGGGGCACAACCCAACCCAA
CCCGTTGTAGAGAAAAATGGAATCGCTGCGTTGTCCGGACTGCTGCTCAG
CATCCGCGTCCGCCCCCGCTCATCTACCCGTGATACGTACCGCCGCCAAT
CCTGTCACAGCACTCTGTTCCTCCATCTCTCTGGAGCACGAACCGCGCGC
GCCGCCTCCTTTCTTCCGGTTCCCTCACTCCAGCATAAAAAAACAACTAA
ATCTACACACGCCAAGTGAACACAAACATCCCGCTATTGCAAGACCGACG
TCGT

Coding sequence (CDS) from alignment at chr_28:1748614..1752817+

>Ec-28_001960.2 ID=Ec-28_001960.2|Name=Ec-28_001960.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=381bp|location=Sequence derived from alignment at chr_28:1748614..1752817+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAACGTGTTGTCCGCAGAGGGATTGGGAATTTTCTCTCCCGTGGCC
GATTTTTTCCGCGCGTCCTTTGTTGAGTTTTTATGTTGGACCGCGGATTA
TTATTGCTCAGGGTTGTCTTTTTTCGCCCATCGTGACAACGGAGGAGATG
CGGGTAGCAAAAATAATTTCAGCTCTTTTGCTAAGAATAATTGCAGCCCA
TCGAAGGGGCAGGCGTGAATGGCTCTGTTTTGGGCTTACCCGGGGGCGTA
TGATCAGCAGTCCGCGCGAAAGCCCATCGACAAGAAGCACGTGCGCTGAT
GTCCCTGGTGATGGCGTTCCGCTCGTCAGGTCTGCCGTTTCCCCGACGCC
GTGTACGATGAATTCCTCCCACTTATGGTAA

Synonyms

The feature 'Ec-28_001960.2' has the following synonyms


Synonym
Esi0033_0055
Esi_0033_0055