Ec-28_001960.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001960.1
Unique NameEc-28_001960.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length84
Homology
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BLAST of Ec-28_001960.1 vs. uniprot
Match: A0A6H5K0K8_9PHAE (NADH-u_ox-rdase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0K8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 9.410e-46
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 3 
Query:   99 MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGVKGVRGPNAVVGASLGLMGGLMLAGQSSFGRLTGQRK 347
            MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGVKG+RGPNAVVGASLGL+GGLMLAGQSSFGRLTGQRK
Sbjct:    1 MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGVKGIRGPNAVVGASLGLIGGLMLAGQSSFGRLTGQRK 83
The following BLAST results are available for this feature:
BLAST of Ec-28_001960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0K8_9PHAE9.410e-4697.59NADH-u_ox-rdase domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1748612..1751381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1319
Hectar predicted targeting categoryother localisation
Gene idEc-28_001960.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001960Ec-28_001960Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1748612..1752817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001960.1Ec-28_001960.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1749771..1750414 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001960.1.1Ec-28_001960.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1748612..1748667 +
Ec-28_001960.1.2Ec-28_001960.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1749727..1749909 +
Ec-28_001960.1.3Ec-28_001960.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1750302..1751381 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0019605UTR:Ec-28_001960.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1748612..1748667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001960.1CDS:Ec-28_001960.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1749771..1749909 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0019603UTR:Ec-28_001960.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1750415..1751381 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001960.1 ID=Ec-28_001960.1|Name=Ec-28_001960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=84bp
MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGVKGV
RGPNAVVGASLGLMGGLMLAGQSSFGRLTGQRK*
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spliced messenger RNA

>Ec-28_001960.1 ID=Ec-28_001960.1|Name=Ec-28_001960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1319bp|location=Sequence derived from alignment at chr_28:1748612..1751381+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCACACAGCTAGCTTTGTGGCGTAACTCGCGAACGAGCTCCTTCATCAC
TGGAAGGAGAGAGCCGCATCCCCCAAATCAGAGTGGGACAGCGAGAAGAG
ATGGCCTTCGAGGACCCTAAGTTTCCGGTCACAGACCCGGCGCCGGGCAT
GGGGACGGTGTTCGGCAACTTGAATGCGACGGATGTTGCGACTGTAGTGG
TGGCTACGGCGGGCTCGGCAGCATGGTGCTTCAAGGGAGTCAAAGGGGTT
CGCGGACCGAACGCAGTAGTGGGAGCCAGTCTGGGTTTGATGGGGGGATT
GATGTTGGCCGGTCAGAGCTCATTCGGACGGCTCACGGGGCAGCGGAAGT
GAAGACACATGTATTTGTTTCGGAACCAGGGTGTTTTATGGCGGTGGACA
AGCTGGCGGCCAATGGAAGCCATGAAGGGGGGGGGTTCTCGCGGGACAAC
TATATTTGTTAGAGAAATGAGTCAAACCCGGGAGAGTCACCAGAATGTCC
CCGGTCGTTCAGACCGTTCTTGATTCAGCGTCCAGTGGTAGGCGACACCA
TTATTTTTCTTCGTTTTGCATCAGTCTTACCTGATAAGTGGAGCGGGGGG
CCAAGCTACTCGGAAGCAACCAGCTTCCCTTGGTTTTTGCAGTCTATGCT
GCGTAGAGTGCCACGCATGGTCAATCAAGCGTTGCTGGAAGGTTATGTAT
CTGTCTTTGCTGGCTTGCATGGGCATCAGCGGCAAGGCGATAGGATGGAG
AAGATAGTGGAGGTGGCGGAACCTTGGGAGCATGTGGTAGCAGCCAACGC
CGATTGCTTGTCTGCGAAGCAGCGACGGTGGTCGCCAAGACGTGCAAGAC
TTGTTTCTGTCTGGCCACTGTGTTGACACCAAGTTTTCCTGGGGCATGAC
AACGTGTTGTCCGCAGAGGGATTGGGAATTTTCTCTCCCGTGGCCGATTT
TTTCCGCGCGTCCTTTGTTGAGTTTTTATGTTGGACCGCGGATTATTATT
GCTCAGGGTTGTCTTTTTTCGCCCATCGTGACAACGGAGGAGATGCGGGT
AGCAAAAATAATTTCAGCTCTTTTGCTAAGAATAATTGCAGCCCATCGAA
GGGGCAGGCGTGAATGGCTCTGTTTTGGGCTTACCCGGGGGCGTATGATC
AGCAGTCCGCGCGAAAGCCCATCGACAAGAAGCACGTGCGCTGATGTCCC
TGGTGATGGCGTTCCGCTCGTCAGGTCTGCCGTTTCCCCGACGCCGTGTA
CGATGAATTCCTCCCACTTATGGTAACGTCGTTTGTTTTATCCTTTGCGA
AATAAACGTTGAAACACGT
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protein sequence of Ec-28_001960.1

>Ec-28_001960.1 ID=Ec-28_001960.1|Name=Ec-28_001960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=84bp
MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKGVKGV
RGPNAVVGASLGLMGGLMLAGQSSFGRLTGQRK*
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mRNA from alignment at chr_28:1748612..1751381+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001960.1 ID=Ec-28_001960.1|Name=Ec-28_001960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2770bp|location=Sequence derived from alignment at chr_28:1748612..1751381+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCACACAGCTAGCTTTGTGGCGTAACTCGCGAACGAGCTCCTTCATCAC
TGGAAGGTCAGTCCGGAAAGAAGCATGTGCGAGGATGTGTTTTGCTGTCG
CTGTGTGAATAGCTATCCTCCAAAGCTCAGAGGCCCTGTGTCACATTTGC
CTCGTGCATTGCCCCCTCAGTTTCAAGAAACGAGTTGTGTGCACGACAAA
CACACAGCTGCCACCGCCGCCGCAGCCCCGGCAACAGCAGGAACCAACCG
AGTTGACCTGAAGTGGCACATTCTGCAAAGCCGATAGGCATGCTGATCAC
TATGTTGTGCTTTGTCTAGCAGCCTCGGAGCATGAGGTCTTCTCCTCGGA
GCCCGTGCGTAACACCACCTCCCGTAGTTGCAGGGAGATAGCAGTACTAC
GTACCTGGTATACAGCTTTCGAGGCGCCCGGTATCTCTCGGGGTTGTTGG
TATCTTGCCGAACCTTCGTTTACAAAACGGGCACATGTGTAGATAGCAGA
AGCGTTGGTTGCTGCGTACAACATCTGCTATGTGCGACCATGCCCGGTGG
AGGTGCTCAGGTGTTATTCCGCCGCATCCTGACAACGTCGGAAATGGGAG
ACAAGGCCCTGGGCGATGTGATGATGTAGCCCTCATTTCCAGAAGAGAGG
GCACACCATGGTCAAAATTCGAATCGAAGCAAGCTCATTCTCAACCCTAG
TCCGAGCGCCGGGCGCAACGGGATATGTCACCTCGTGAAACCCAGTGGTG
GCATGAGCCATTCCTAATGTACGCTTCGTGCACAGCAGTTTGGCAGCAGG
AACCATGGAAGCAGTGAGTAGACCGCATCCTCTGCGACTCCACCTTATGC
CCCTACTGCATTCCAATACCTGCGCCTGCCAAGGGGTTGGACACGTACTG
ACAGGGTTGCGCAGGTGCACGCCACATAAGGCTCGATTGCATCATCAATC
CAGCTGTGCACCCCCCGGTACCAAAGTACGGCAGGGAGCGCCGCATATAC
ATATACACATGCATGCTGCTCATTTGAGCGCCCCTCCTGTGTACGTACTC
CTAGATCTCACTCTACTGTGGACATTTGTCGTGTATGTATCTCCCTGTGT
GCCTTGGTTTCGCAGGAGAGAGCCGCATCCCCCAAATCAGAGTGGGACAG
CGAGAAGAGATGGCCTTCGAGGACCCTAAGTTTCCGGTCACAGACCCGGC
GCCGGGCATGGGGACGGTGTTCGGCAACTTGAATGCGACGGATGTTGCGA
CTGTAGTGGTGGCTACGGCGGGCTCGGCAGCATGGTGCTTCAAGGGAGGT
GAGGTTCGCTGATTTCTCATTGCCGAAACGTTTTCGCCCGAGATAGTCTC
GCCAACAACAAGAAACAATGCCAGATTTCGTACTTTGGAAACATAATCTT
GGGTATGTTCTGCACATGAAAAAACATGCACCGTTCATGTACCAATCGGA
GACACGATTGAACAAGATCATGTTTGCGCGATACGCGTTTCTGGCGAGAG
GCCTAGCGTACCACCACCCCCCTGTTGCCACGGTGCCCCCCCTCATCCTC
TCGTCTGGCTTTCCGCGTACAAACGCCTGTGCGGGTTCATTTGATGTCCC
ATCTGAATGAGCGTTTGTCGTCATACCAACCCTCCCCCGCTCTCCTTCTC
CTTGACGTTGCCCGATTTTGCGATCTCATGAAAACAACAGTCAAAGGGGT
TCGCGGACCGAACGCAGTAGTGGGAGCCAGTCTGGGTTTGATGGGGGGAT
TGATGTTGGCCGGTCAGAGCTCATTCGGACGGCTCACGGGGCAGCGGAAG
TGAAGACACATGTATTTGTTTCGGAACCAGGGTGTTTTATGGCGGTGGAC
AAGCTGGCGGCCAATGGAAGCCATGAAGGGGGGGGGTTCTCGCGGGACAA
CTATATTTGTTAGAGAAATGAGTCAAACCCGGGAGAGTCACCAGAATGTC
CCCGGTCGTTCAGACCGTTCTTGATTCAGCGTCCAGTGGTAGGCGACACC
ATTATTTTTCTTCGTTTTGCATCAGTCTTACCTGATAAGTGGAGCGGGGG
GCCAAGCTACTCGGAAGCAACCAGCTTCCCTTGGTTTTTGCAGTCTATGC
TGCGTAGAGTGCCACGCATGGTCAATCAAGCGTTGCTGGAAGGTTATGTA
TCTGTCTTTGCTGGCTTGCATGGGCATCAGCGGCAAGGCGATAGGATGGA
GAAGATAGTGGAGGTGGCGGAACCTTGGGAGCATGTGGTAGCAGCCAACG
CCGATTGCTTGTCTGCGAAGCAGCGACGGTGGTCGCCAAGACGTGCAAGA
CTTGTTTCTGTCTGGCCACTGTGTTGACACCAAGTTTTCCTGGGGCATGA
CAACGTGTTGTCCGCAGAGGGATTGGGAATTTTCTCTCCCGTGGCCGATT
TTTTCCGCGCGTCCTTTGTTGAGTTTTTATGTTGGACCGCGGATTATTAT
TGCTCAGGGTTGTCTTTTTTCGCCCATCGTGACAACGGAGGAGATGCGGG
TAGCAAAAATAATTTCAGCTCTTTTGCTAAGAATAATTGCAGCCCATCGA
AGGGGCAGGCGTGAATGGCTCTGTTTTGGGCTTACCCGGGGGCGTATGAT
CAGCAGTCCGCGCGAAAGCCCATCGACAAGAAGCACGTGCGCTGATGTCC
CTGGTGATGGCGTTCCGCTCGTCAGGTCTGCCGTTTCCCCGACGCCGTGT
ACGATGAATTCCTCCCACTTATGGTAACGTCGTTTGTTTTATCCTTTGCG
AAATAAACGTTGAAACACGT
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Coding sequence (CDS) from alignment at chr_28:1748612..1751381+

>Ec-28_001960.1 ID=Ec-28_001960.1|Name=Ec-28_001960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=252bp|location=Sequence derived from alignment at chr_28:1748612..1751381+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCTTCGAGGACCCTAAGTTTCCGGTCACAGACCCGGCGCCGGGCAT
GGGGACGGTGTTCGGCAACTTGAATGCGACGGATGTTGCGACTGTAGTGG
TGGCTACGGCGGGCTCGGCAGCATGGTGCTTCAAGGGAGTCAAAGGGGTT
CGCGGACCGAACGCAGTAGTGGGAGCCAGTCTGGGTTTGATGGGGGGATT
GATGTTGGCCGGTCAGAGCTCATTCGGACGGCTCACGGGGCAGCGGAAGT
GA
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Synonyms
The feature 'Ec-28_001960.1' has the following synonyms
Synonym
Esi0033_0055
Esi_0033_0055