Ec-28_001130.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001130.4
Unique NameEc-28_001130.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length100
Homology
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BLAST of Ec-28_001130.4 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.000e-43
Identity = 94/110 (85.45%), Postives = 97/110 (88.18%), Query Frame = 3 
Query:  132 LALEGWGGSARGAAREQEEVGGAGFSWDSGRAPAARAAPSTTPARRYIPAFSFGSLTSRSRRGSTGVTRSFDERGERRGNAPPRQALHLAPPDWTGTPPRSGPQRCPRPR 461
            LALEG GGSARGAAREQ E+GGA FSWDSGRAPA RAAPST PARRYIPAF+FGSLTSRSRRGSTGVTRSFDERGE R +APPRQ  HLAPPD TGTP RSGPQR P PR
Sbjct:  276 LALEGLGGSARGAAREQREIGGAHFSWDSGRAPATRAAPSTAPARRYIPAFTFGSLTSRSRRGSTGVTRSFDERGESRESAPPRQPPHLAPPDRTGTPHRSGPQRAPCPR 385
The following BLAST results are available for this feature:
BLAST of Ec-28_001130.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTI9_9PHAE1.000e-4385.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1074606..1077129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length881
Hectar predicted targeting categoryother localisation
Gene idEc-28_001130.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130Ec-28_001130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1074606..1082620 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130.4.3Ec-28_001130.4.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1074606..1075032 -
Ec-28_001130.4.2Ec-28_001130.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1075699..1075927 -
Ec-28_001130.4.1Ec-28_001130.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1076905..1077129 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0011303UTR:Ec-28_001130.4Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1074606..1075032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130.4CDS:Ec-28_001130.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1075853..1075927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130.4Ec-28_001130.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1075853..1077129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001130.4 ID=Ec-28_001130.4|Name=Ec-28_001130.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=100bp
MATATAAAVAAADTQGCRTRGCRDTSPDLAGASRRSNQGGHGKGWLSRAG
AVAPGGLRGNRRRSEGLVFRGIRGEHQQRGQHRRQLPRGATYRPLVSVP*
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spliced messenger RNA

>Ec-28_001130.4 ID=Ec-28_001130.4|Name=Ec-28_001130.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=881bp|location=Sequence derived from alignment at chr_28:1074606..1077129- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACGGCGACGGCGGCGGCGGTGGCGGCGGCGGACACCCAAGGGTG
TCGGACACGGGGGTGCAGGGATACTTCACCCGATCTCGCAGGCGCTTCTC
GACGCAGCAATCAGGGGGGACACGGGAAGGGCTGGCTCTCGAGGGCTGGG
GCGGTAGCGCCAGGGGGGCTGCGCGGGAACAGGAGGAGGTCGGAGGGGCT
GGTTTTTCGTGGGATTCGGGGAGAGCACCAGCAGCGAGGGCAGCACCGTC
GACAACTCCCGCGAGGCGCTACATACCGGCCTTTAGTTTCGGTTCCTTGA
CGTCGAGATCGCGGAGAGGGTCCACGGGGGTGACGAGGTCGTTCGACGAG
CGGGGGGAGAGGCGCGGAAATGCACCGCCCAGACAGGCTCTGCACCTGGC
ACCACCGGATTGGACTGGCACCCCACCGAGGTCTGGACCGCAGCGATGTC
CTAGGGCCACGACGGTCACGGAGGAGTCGACCCCAACGGCCACCCCAGCG
GCGGCTTCCGCCGCTAGCCCTGCTTCTTCTTCCGCCGCCTCAGCCTCTGC
TTCTCCCGTCGGCGGTGGCGGCGGCGCCGGCGGAGGCGGCAGCGGTGGAT
TTTCTGCCGCCGCTGCTGCTACTGCTGCCTCCTCCTCCCCCTCCTCCTCC
GCGACTGTGTTAGCACCGACGTCCTCCTCTTCACATTCTTTGCGGACCAC
GGCGGCGGCGGCGACAAGGGGAACGCCTTCGACGGTGTCGATGCCGTCGT
CGTCGGTGTCGACCTCGTCCCCGGAGGAGGAGCGCCTGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of Ec-28_001130.4

>Ec-28_001130.4 ID=Ec-28_001130.4|Name=Ec-28_001130.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=100bp
MATATAAAVAAADTQGCRTRGCRDTSPDLAGASRRSNQGGHGKGWLSRAG
AVAPGGLRGNRRRSEGLVFRGIRGEHQQRGQHRRQLPRGATYRPLVSVP*
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mRNA from alignment at chr_28:1074606..1077129-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001130.4 ID=Ec-28_001130.4|Name=Ec-28_001130.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2524bp|location=Sequence derived from alignment at chr_28:1074606..1077129- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGACGGCGACGGCGGCGGCGGTGGCGGCGGCGGACACCCAAGGGTG
TCGGACACGGGGGTGCAGGGATACTTCACCCGATCTCGCAGGCGCTTCTC
GACGCAGCAATCAGGGGGGACACGGGAAGGGCTGGCTCTCGAGGGCTGGG
GCGGTAGCGCCAGGGGGGCTGCGCGGGAACAGGAGGAGGTCGGAGGGGCT
GGTTTTTCGTGGGATTCGGGGAGAGGTGAGCGGACGGTAAGGGTGTGAGT
GAACGCGCGCTGCTTGCTACGGAGCAAGCAAGGGGAAGTGGGTAACAACA
CGAGCGGGATGATGTCGAAGAGTTGACTTGAGTGCAGACGAGGCTGTGCT
TGAACTGCCGTGGTGTGCGCCGAAGATGACGATGATCTCTACAGCGCGTG
TTGTTTTCGCTTCACTCACCCCGGTGCAAGACGTTGTGGTAGAGGCGTGT
GCTGTGGTGGGTCGTGGTTGCAAGCGGTGTGCAATCAGGCACTGCTGAAG
TTTGATGATGCGAGGCCGGTGCGGGGAACACGAGGTATGCATATCCACCG
TCCGTATGACACCCGATGGAATATGCACGCCACACTCCGGGGGTGAATCT
CGGAAGGTCGCTGTCACGGACCGAAGAAGGCGATGCCGGCATTCACAGAT
GGCTCTTTTCAGGAGGGCTCTGTGGCACAACAGCTTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTCTTAACATTAAAAAAGAACGTTCCG
GGTTCTGCCACATTTAGTGAACACGTTTTTCGTGCGTGGAAGGTACTGAG
ATCGGAAAACCGGCCCAGGGCATGTGTGGTGTCGCACGGAACACACTTTT
CCCTCCCGCCACCACGATGCCAATTTTTGGCTTTCTCTACCAACGCTCGG
TCTCTTTGCCTTCCCTCGTTCTCCCTCCCCAAACGTTCCATCACCTCCAA
TGCCACCAACATGGGCCGAACTCCCCCCCCTCCCCTTACCTGCCACCACC
GTTGGTCAAACTCTCCCCCCCCCCCGCACCTACATAGTAGGAAGTTGGTC
ATTGGTGATCGGTCCTGTGGGAAAAAAAAAACGGTCCTCTCGAGGACGCG
TGGTCGGTGGTCTTTTCGCGTGCATAGCATGAGTACGCCCCCTTCACTTA
CGTACCACCATGCCCGACATCCCCCGGCCGACACGCTCCCGCCCTCCGGC
AGCACCAGCAGCGAGGGCAGCACCGTCGACAACTCCCGCGAGGCGCTACA
TACCGGCCTTTAGTTTCGGTTCCTTGACGTCGAGATCGCGGAGAGGGTCC
ACGGGGGTGACGAGGTCGTTCGACGAGCGGGGGGAGAGGCGCGGAAATGC
ACCGCCCAGACAGGCTCTGCACCTGGCACCACCGGATTGGACTGGCACCC
CACCGAGGTCTGGACCGCAGCGATGTCCTAGGTGAGATCAGTCTCTCAAA
GACTTTGTTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTT
GTTTCGTTTTTGCGTTGGCCCGACGCCAGTCGTAGGAGGTAAGTTATGTG
GCTGGGGGGTGTATACTCGTAGCCGTGCATGCCGTAGTCGTAGGACCGTT
GGCCTCGCATCCCTAGGAAGAACGCCGGGTTCTCACCGGACCAGGCTAAA
TTGCGCATCCATCACCAAGGAGCGCGAAGAGCCGTGAGGCACAATTCGGA
GAGACGCATGGAGGGTGCGCTGCAAGGGTTGTCGGCATCTTGTCTTCACG
TCCTTGCGTACGGATTGTTGTTGTTGGGGAGGAAGAAGGGGCAAAAGTTG
TAACACGAAGCTTGTGTTGACGGCAAGTACTGGTCACGGGGGTCAAATGC
CTAAGCGACGCCTCTCTCTCTCTGCCTCACGGCATGGTTCGAGGAGCGCA
TGCTCCGACGATGCCGCTGTAGGCCCTATTTGCAGACGAAGGGAAGCAAC
GAACGGGCACGATTCATTCGGTACGACGACCTTCATTTTGTGTTTCCTCC
CCCCCCTCCCAAACATTGCTTGGGCCGTACACGTGTGTGACAACTTGGAC
TTGGTCGTTGGCTGAACCGCCGTACGCTGGGCTCTCGGGGACAGCAGGGC
CACGACGGTCACGGAGGAGTCGACCCCAACGGCCACCCCAGCGGCGGCTT
CCGCCGCTAGCCCTGCTTCTTCTTCCGCCGCCTCAGCCTCTGCTTCTCCC
GTCGGCGGTGGCGGCGGCGCCGGCGGAGGCGGCAGCGGTGGATTTTCTGC
CGCCGCTGCTGCTACTGCTGCCTCCTCCTCCCCCTCCTCCTCCGCGACTG
TGTTAGCACCGACGTCCTCCTCTTCACATTCTTTGCGGACCACGGCGGCG
GCGGCGACAAGGGGAACGCCTTCGACGGTGTCGATGCCGTCGTCGTCGGT
GTCGACCTCGTCCCCGGAGGAGGAGCGCCTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at chr_28:1074606..1077129-

>Ec-28_001130.4 ID=Ec-28_001130.4|Name=Ec-28_001130.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=300bp|location=Sequence derived from alignment at chr_28:1074606..1077129- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGACGGCGACGGCGGCGGCGGTGGCGGCGGCGGACACCCAAGGGTG
TCGGACACGGGGGTGCAGGGATACTTCACCCGATCTCGCAGGCGCTTCTC
GACGCAGCAATCAGGGGGGACACGGGAAGGGCTGGCTCTCGAGGGCTGGG
GCGGTAGCGCCAGGGGGGCTGCGCGGGAACAGGAGGAGGTCGGAGGGGCT
GGTTTTTCGTGGGATTCGGGGAGAGCACCAGCAGCGAGGGCAGCACCGTC
GACAACTCCCGCGAGGCGCTACATACCGGCCTTTAGTTTCGGTTCCTTGA
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Synonyms
The feature 'Ec-28_001130.4' has the following synonyms
Synonym
Esi181_0094
Esi_181_0094