Ec-28_001130.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001130.1
Unique NameEc-28_001130.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length557
Homology
[Close]
BLAST of Ec-28_001130.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.890e-120
Identity = 336/438 (76.71%), Postives = 344/438 (78.54%), Query Frame = 3 
Query:  975 MGNKMSVSSTFSHASSGGSNSRRGXXXXXXXXXXXXXXXXXXXXXXXXNIDSSSRXXXXXXXXRGVDGGTAYSSSTLTPPRLDDDSGSSGGNTHRFYHPETPRRETAFHCAIWPQLRTPPSAESSETSSLSGGATEGGGSMFVASSTPADSPSRTXXXXXXTASVSTPRGAFGAAAEVGRERYPMFSLSSLRRVGGVAAAFGGFSTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPRVSDTGVQGYFTRSRRRFSTQQSGGTREGLALEGWGGSARGAAREQEEVGGAGFSWDSGRA--ARAAPSTTPARRYIPAFSFGSLTSRSRRGSTGVTRSFDERGERRGNAPPRQALHLAPPDWTGTPPRSGPQRCP-------SRATTVTEESTPT 2261
            MGNK+SVSSTFS+ASSGGSNSRRG       XXXXXXX          NIDSSSR  XXXXX RGVDGGTAY+SST TPPRL+DDSGS GGNTHRFYHPETPRRETAFHCA WPQLRTP SAESSETSSLSGGATEGGGSMF A STPADSPS T      TASVSTPR AFGAAA+VG ERYPMFSLSSLRRVGGVAAAFGGFSTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXX                               LALEG GGSARGAAREQ E+GGA FSWDSGRA   RAAPST PARRYIPAF+FGSLTSRSRRGSTGVTRSFDERGE R +APPRQ  HLAPPD TGTP RSGPQR P       SRATTVTEE TPT
Sbjct:    1 MGNKLSVSSTFSYASSGGSNSRRGRGSSYSIXXXXXXXISSI------NIDSSSRSTXXXXXSRGVDGGTAYTSSTRTPPRLNDDSGSGGGNTHRFYHPETPRRETAFHCATWPQLRTPSSAESSETSSLSGGATEGGGSMFAAGSTPADSPSGTAAAAA-TASVSTPRRAFGAAAQVGLERYPMFSLSSLRRVGGVAAAFGGFSTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSICFSXXXXXXXXXXXXX-----------------------------LALEGLGGSARGAAREQREIGGAHFSWDSGRAPATRAAPSTAPARRYIPAFTFGSLTSRSRRGSTGVTRSFDERGESRESAPPRQPPHLAPPDRTGTPHRSGPQRAPCPRALEDSRATTVTEEWTPT 402
[Close]
BLAST of Ec-28_001130.1 vs. uniprot
Match: D8LGT7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.980e-6
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = -2 
Query:   45 MAPRRWALCGLGYTAALALLAFQAPGARTQ 134
            MAPRRWALCGLGYTAALALLAFQAP AR Q
Sbjct:    1 MAPRRWALCGLGYTAALALLAFQAPAARAQ 30
The following BLAST results are available for this feature:
BLAST of Ec-28_001130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTI9_9PHAE2.890e-12076.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LGT7_ECTSI6.980e-693.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1074613..1082620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2649
Hectar predicted targeting categoryother localisation
Gene idEc-28_001130.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130Ec-28_001130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1074606..1082620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130.1Ec-28_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1074615..1077931 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130.1.4Ec-28_001130.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1074613..1075035 -
Ec-28_001130.1.3Ec-28_001130.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1075699..1075921 -
Ec-28_001130.1.2Ec-28_001130.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1076905..1078133 -
Ec-28_001130.1.1Ec-28_001130.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1081847..1082620 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0011303UTR:Ec-28_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1074613..1074614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001130.1CDS:Ec-28_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1074615..1075035 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0011305UTR:Ec-28_001130.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1077932..1078133 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001130.1 ID=Ec-28_001130.1|Name=Ec-28_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=557bp
MGNKMSVSSTFSHASSGGSNSRRGRGSSSSYSRSSNSSSSSISSISSINI
DSSSRSTNIDNSSRGVDGGTAYSSSTLTPPRLDDDSGSSGGNTHRFYHPE
TPRRETAFHCAIWPQLRTPPSAESSETSSLSGGATEGGGSMFVASSTPAD
SPSRTAAAAAATASVSTPRGAFGAAAEVGRERYPMFSLSSLRRVGGVAAA
FGGFSTDSDSGGGGGNGSSDSDSDSSDSSDSDNGDHDSRGFRSAEGSCSD
SSSISCSTRSIGFSDDDDGDGDGGGGGGGGHPRVSDTGVQGYFTRSRRRF
STQQSGGTREGLALEGWGGSARGAAREQEEVGGAGFSWDSGRAARAAPST
TPARRYIPAFSFGSLTSRSRRGSTGVTRSFDERGERRGNAPPRQALHLAP
PDWTGTPPRSGPQRCPSRATTVTEESTPTATPAAASAASPASSSAASASA
SPVGGGGGAGGGGSGGFSAAAAATAASSSPSSSATVLAPTSSSSHSLRTT
AAAATRGTPSTVSMPSSSVSTSSPEEERLXXXXXXXXXXXXXXXXXXXXX
XXXXXXX
back to top

spliced messenger RNA

>Ec-28_001130.1 ID=Ec-28_001130.1|Name=Ec-28_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr_28:1074613..1082620- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AACCGAAGAGATAACAAGGAGTCGGGGATTGCGAAAGATTACTGCTGTGT
GCGCGCACCTGGTGCCTGGAAAGCTAGCAGCGCCAACGCGGCAGTGTAAC
CCAGCCCGCACAACGCCCATCGCCGTGGAGCCATGGGTTTGTCTCCGCAG
TCCAGCAGCTGGCTGCCTTCCTCCCTCTCAGGCTAGCTCCGCTCACTCCC
GCTCTTCGTTTAAACGACGACCGCACACAACAACCTCTCGCCTTCTTCGT
ACTTGTTTTTTGGACCGTCGAAGGACCTCGACGTCCTCTGTTTCCCGCAC
TTTTCCAACACACGGCAAAACGCGCACAATCACCTCCCCCAGTCTTCCGA
GCAAGGATGGATCTACGGCAGCCCTCTTCGCCCAACGTTTGACGACTCCG
GCGGGCAGAGGACAGATACGAGACAGAAGTCGGGCTCCGAGATTGTTAGA
CCTGCTGTCAGCACGCTGGGTGGGGGGGGGGCACAAAAGAAAGTCTTGCC
GAGGTATACGTTTTCCAGTGTGTGGGCCCCCTTCAGTATGGAATCAAGGA
AACAACTGGGAAACCACGGCGCCGTTGTTGTGTGACAGCAGCACAGAAGT
GAGCGGTCGGTGCCCGCGTCGGCGTGTGTGTGTGGCATTCGTGCCTTTGT
CACTCCTCCAGGTGAGCAGGACTGAGGAGTGGCACGTCGTCGCTGAGCAG
TGACAGCAGCAGCAGTGAGACACGGAGAGACACGACGGACACACAAAAGG
GAGACGGGAGACGCGGACGAAAGGAATCGCAGCGGGCGGCAAGCCTGCAG
GCGTTGCTGCGGGTCGGGGGGGGGGGGGGCGGATACAGCGCCATAATACC
CTCTCCCACCACCACGTTAGCGTGTCGTGCGCTTGGGGCATCGAGCCACT
TCGGTGACCCGGTTGATGGAGGAGTAGCAGTAGCGGTGCCGGCACCAGCA
GCATCAAGCAGAGGCACCAAGTCACCATGGGGAACAAGATGAGCGTCTCG
TCGACCTTTTCTCATGCAAGCAGCGGTGGCAGCAACAGCAGGCGCGGCAG
AGGCAGCAGCAGCAGCTACAGCAGAAGCAGCAACAGCAGCAGCAGCAGCA
TCAGCAGCATCAGCAGCATCAACATCGACAGCAGCAGCAGAAGCACCAAC
ATCGACAATTCCAGCAGGGGTGTGGACGGCGGCACCGCCTACTCCTCCTC
TACCCTAACACCTCCGCGGCTGGACGACGACAGCGGCAGCAGCGGCGGGA
ACACCCACCGGTTTTACCATCCGGAAACCCCCCGCCGAGAGACCGCTTTC
CACTGCGCGATATGGCCGCAGCTGCGCACGCCGCCGTCGGCGGAATCTTC
GGAGACGAGCAGCCTGTCCGGTGGGGCGACGGAGGGCGGTGGGAGCATGT
TCGTCGCCAGTAGTACCCCCGCTGATTCTCCATCGAGGACGGCGGCGGCG
GCGGCGGCAACGGCGAGCGTCTCTACCCCGAGGGGTGCTTTTGGTGCTGC
TGCTGAGGTTGGTCGCGAGCGGTACCCGATGTTCTCGCTGTCTTCGCTCC
GACGGGTGGGGGGCGTGGCGGCGGCATTCGGGGGCTTTTCTACGGACAGC
GACAGCGGCGGCGGCGGTGGTAACGGCAGCAGCGACAGCGACAGCGACAG
CAGCGATAGCAGCGACAGCGACAACGGCGACCACGACAGCAGAGGGTTCA
GGAGCGCCGAGGGCAGCTGCAGCGACAGCAGTAGCATCAGCTGCAGCACG
CGGAGCATCGGCTTCAGCGACGACGACGATGGCGACGGCGACGGCGGCGG
CGGTGGCGGCGGCGGACACCCAAGGGTGTCGGACACGGGGGTGCAGGGAT
ACTTCACCCGATCTCGCAGGCGCTTCTCGACGCAGCAATCAGGGGGGACA
CGGGAAGGGCTGGCTCTCGAGGGCTGGGGCGGTAGCGCCAGGGGGGCTGC
GCGGGAACAGGAGGAGGTCGGAGGGGCTGGTTTTTCGTGGGATTCGGGGA
GAGCAGCGAGGGCAGCACCGTCGACAACTCCCGCGAGGCGCTACATACCG
GCCTTTAGTTTCGGTTCCTTGACGTCGAGATCGCGGAGAGGGTCCACGGG
GGTGACGAGGTCGTTCGACGAGCGGGGGGAGAGGCGCGGAAATGCACCGC
CCAGACAGGCTCTGCACCTGGCACCACCGGATTGGACTGGCACCCCACCG
AGGTCTGGACCGCAGCGATGTCCTAGCAGGGCCACGACGGTCACGGAGGA
GTCGACCCCAACGGCCACCCCAGCGGCGGCTTCCGCCGCTAGCCCTGCTT
CTTCTTCCGCCGCCTCAGCCTCTGCTTCTCCCGTCGGCGGTGGCGGCGGC
GCCGGCGGAGGCGGCAGCGGTGGATTTTCTGCCGCCGCTGCTGCTACTGC
TGCCTCCTCCTCCCCCTCCTCCTCCGCGACTGTGTTAGCACCGACGTCCT
CCTCTTCACATTCTTTGCGGACCACGGCGGCGGCGGCGACAAGGGGAACG
CCTTCGACGGTGTCGATGCCGTCGTCGTCGGTGTCGACCTCGTCCCCGGA
GGAGGAGCGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
back to top

protein sequence of Ec-28_001130.1

>Ec-28_001130.1 ID=Ec-28_001130.1|Name=Ec-28_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=557bp
MGNKMSVSSTFSHASSGGSNSRRGRGSSSSYSRSSNSSSSSISSISSINI
DSSSRSTNIDNSSRGVDGGTAYSSSTLTPPRLDDDSGSSGGNTHRFYHPE
TPRRETAFHCAIWPQLRTPPSAESSETSSLSGGATEGGGSMFVASSTPAD
SPSRTAAAAAATASVSTPRGAFGAAAEVGRERYPMFSLSSLRRVGGVAAA
FGGFSTDSDSGGGGGNGSSDSDSDSSDSSDSDNGDHDSRGFRSAEGSCSD
SSSISCSTRSIGFSDDDDGDGDGGGGGGGGHPRVSDTGVQGYFTRSRRRF
STQQSGGTREGLALEGWGGSARGAAREQEEVGGAGFSWDSGRAARAAPST
TPARRYIPAFSFGSLTSRSRRGSTGVTRSFDERGERRGNAPPRQALHLAP
PDWTGTPPRSGPQRCPSRATTVTEESTPTATPAAASAASPASSSAASASA
SPVGGGGGAGGGGSGGFSAAAAATAASSSPSSSATVLAPTSSSSHSLRTT
AAAATRGTPSTVSMPSSSVSTSSPEEERLXXXXXXXXXXXXXXXXXXXXX
XXXXXXX
back to top

mRNA from alignment at chr_28:1074613..1082620-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001130.1 ID=Ec-28_001130.1|Name=Ec-28_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8008bp|location=Sequence derived from alignment at chr_28:1074613..1082620- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AACCGAAGAGATAACAAGGAGTCGGGGATTGCGAAAGATTACTGCTGTGT
GCGCGCACCTGGTGCCTGGAAAGCTAGCAGCGCCAACGCGGCAGTGTAAC
CCAGCCCGCACAACGCCCATCGCCGTGGAGCCATGGGTTTGTCTCCGCAG
TCCAGCAGCTGGCTGCCTTCCTCCCTCTCAGGCTAGCTCCGCTCACTCCC
GCTCTTCGTTTAAACGACGACCGCACACAACAACCTCTCGCCTTCTTCGT
ACTTGTTTTTTGGACCGTCGAAGGACCTCGACGTCCTCTGTTTCCCGCAC
TTTTCCAACACACGGCAAAACGCGCACAATCACCTCCCCCAGTCTTCCGA
GCAAGGATGGATCTACGGCAGCCCTCTTCGCCCAACGTTTGACGACTCCG
GCGGGCAGAGGACAGATACGAGACAGAAGTCGGGCTCCGAGATTGTTAGA
CCTGCTGTCAGCACGCTGGGTGGGGGGGGGGCACAAAAGAAAGTCTTGCC
GAGGTATACGTTTTCCAGTGTGTGGGCCCCCTTCAGTATGGAATCAAGGA
AACAACTGGGAAACCACGGCGCCGTTGTTGTGTGACAGCAGCACAGAAGT
GAGCGGTCGGTGCCCGCGTCGGCGTGTGTGTGTGGCATTCGTGCCTTTGT
CACTCCTCCAGGTGAGCAGGACTGAGGAGTGGCACGTCGTCGCTGAGCAG
TGACAGCAGCAGCAGTGAGACACGGAGAGACACGACGGACACACAAAAGG
GAGACGGGAGACGCGGACGAAAGGGTGAGTCTGCCATCGTTTGTGTGGGC
AGTTTTCGAAAGGAGTTTGTACACGCTGCCCCCCCCACATATGCGGCAAT
GGGATACACACAAGCTGCTGTGGCTTGTGGAAGACTCTCTGCTTTCCGGT
GCGTGTCCTTGTTTGTGTCAACATACGGCGGTCGAGTTAGGTTAGTGCTC
ACACGGCAAGCTTGTGACGGGGCACTTGTAACAGCAGTAGTGCCGTCCTG
CCACTGTCAACCAACCTGTCACTGAAAGAGTCGGAGGAGCCCACCGGCCA
TGCCCACAACAACATCTGCTGCTGGTGTGTGCTGTCTTCGAAACCTCGCC
TGGTTCGGAGCGTCCACGCCTACCCGCACCCTTGAGCCCCGACCCACAAG
CACGAATCACACTCATCCCGGAGTTGAAAGTGCCTCGCCTGTACTCGGAC
TACATGTGGATAGTCCAGGGATTTTGCAGGAAGGGGAGCCGCGAAACTTC
ATTGTGCGAGCCCGCATGTTGCCCGGCGTTCATTCTACACATACATATGA
ATCGGCAAAGGGTAAAGGCCTACAGCCAAGAGACGGCGCTGGGTCCTATG
CATAGGATTGACATGCGCATCGTAGGGCTGTAGTCTAGACCCTGCCATAC
GTTGTACCGCTCAATATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTCTTCACATTAAAAACCGTTCCGATCTCTCTCTACCCAGTACCTTC
ATATATCCATACTGATCCAACACTTGACGCGGTCGATTCCCGTGGTGATA
GGCTAACTTACCCTAAAAAGGTACGCTCAAATAAATTGGCCCCGAGGGGT
CCGCAAGTCGATAGAAATCAACGACAGATATTCTGGAGTCCTCCGCTCCC
TCTGCACGCTATGCGAGGTAACAAGATATGCACCGCCGAGGTCTTGCCTC
GGATGTGTGTTTCTTCATGCTCAGGCCGAAGAGTTGTAGTGTAGACACTT
TGGAGATGGAGACATATTTCGCGTATCATTTACATGCGTTTTGCATGGGC
ATTGTACAATGGTGACTTCATGAGTCGCGAGGGAAGGGATTGCTGTACCC
TTCTCGCGATAAAAATATCTCAGGCAGGAACCGCAGGAGGGGGTCCAACC
CCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTAGTAGAGGT
GGAGGATAGGGGCCAGAGGGGCAGACGACAGAATCCAATGATGGGAGAAA
ACAAAAATGTGTTTATTTAGTGACTTTTCGAGGTGTGTTTTTTTTCAAGT
GTTGTATTCTACTGCTGTACAGCAAGCAGCACACAAAGGAGTAGGTACCG
TATCCACGGAGATAAATACTGACCGTACAGAATGTACTCAATTCCGAGAT
AACTTCAAGTACTCCACAACTACAAGTACCGGAATTGTATGTAATAAAAG
TACACGGGAAGGAGGTAGAATAGCGCTCCCACCAACGAACGCACCATCCA
CGACTCGACCTAGCCGCTGAACGCTACGACACACGTACGCCCGACCCTAT
AAAAATTTACAATTTTAATTTTAAAAATTGAGCCACAACCATGTGTGCAT
TCTACATATTCGGCGATTCGCTCGAGCCCTCCCTCTAACGGATAAAATTT
GTCAACGCTTCCCATGAAGGGACGCATTCAACAGATGCGCGGGGATGAGT
TTTACAGCACTCGATCCCGCCCGTTGGTACTGACTGATCTGCACGGTTTT
TACTCCCAGCTGCGAGAGCCTACTCCCAACCCCCTCAAACCTAGTACTGT
GTAAGGAGCAACACCGACAGGTTGTTGAATGAAATACTTTTCTTTTTTTT
TTCTCTGCCTTAAAGAAACGCGAGGTTGGCATCACCTCCCTTTGAACGGG
TTTTCTTGCCTCTCATTGGAGCGAAACTATCGAAGTTTTTTGGTAGACAT
GCCTTCTTTGGGAGACTGCTGGTGGTGGGCCCACTATCCAAGTGTAAGAA
ATTGCACCGCCAAAACCGTGTGGCACGCGTAGTGGCGTCACCTAATGGAA
CGCTTGGTCCTTTGCATTTGCAGCGATATGCCTATGTACAAATGCGACTT
TTTTGGTGGTTATTTTGTTTTTTTCTCTGGTGGGACAGCGTTTTTTCTCA
CGCTTTCTTCTGAATGGCACTCAGAGGACCCGTCGGTACATTTCCCGTTT
CGTGTGGGGCTCGCGGGACCTCGGTGATGCGCGTGATGGCCGCTGAAAAG
TCGCTGGGACTGGTTCTATTCCAGGGGCTGCGAATCCAACCAAACAAGCC
TTCAGATATATACATGAAAGCTGAACAGGAACACTTTCTTGCGGGGTGTA
CTCCTCTTTGATTCCTGCGCAACGCACACAAGTCCCACAAACCTTGGGCA
ACACGAATACGTGAGAGCGAATGATCAAACGCTGCGGACTGCAGCAGTAG
AACCTACAGCAAAGACGTCATCGCTGGCCTAAAAGCACACACTCATGCAC
ACGCGAAAAGGCACAGCGAGAAAACAAAAATACCCCGCGCATGATGCAAG
ATTCCAAGCAAATTCTGAAGGTTGTTGTATGCGAAACCGGCACCCATACC
GATCGTCATGACGTTTGAGATGCAACGATGCGACCGCGATGGCATTGACC
ATGTCCTCTTGCGTCGCCCCCGGGAGGCAAGTCAAGTAACTCCCGAAGGG
GAGCCTTGTATACTGTGCCTTGTTGGTTTCTCAGGGTCGTATTCCTTCCT
TTGTTGTTCCTTTTCTTTTCAGAGGATCAAAACAAAACATGTGTACAACA
AACTGACTTTTCAGATCTAGACGTTAAACTTTGCAGAATTATGTAGTAGC
GTTCCTGGGACCAGTCCTGGATGCCAAACGGTGGGACGTTCCAGAACAGG
GTAAATATAGTTCTGACCGATTTTCCAGTCCGAAACTGTCTACAAATGCA
CGGTGGTGAATAGCGAAAATGTATGTTTCTTTTTTCTCTACAGCCAACGC
CCGTGCTTAATTATTTGGCAGTCAAGAAATTGATACAGTCTCCAAGAACT
GGGAGTCTAAGAACTTGAGCACCATTGGTGAACACGGTTAAGAACCTCTA
CACTAATACCATTCGAAGCAGAACCCTGGGAAGTATTGTAAGAGCCCCAC
CTTCGGGAAAAACTAGGGGTTCTTGACTGCGGGCGCCCACTCTTTCCGGA
AACGCGATAAATTTTATGACAAATGGCAGCACAAGCCACAGCAGAGCACA
ACCCCCTTGCCTTGCCAAAGCCAAAGCACGGCCTTCAACCAACACGGGCG
GCGTGGCCGAGAATGTTCGCACGCAACCTGACGTTTACCTTGGACGGGGG
GGCACGGGAGCCGGCCGGCTTGTGGCAGTTTTCCTGGCGACCTTGGCATC
ACTTTATAGTGTACAGAAAAAAGGGCTTGTATGCGTACGCCCGTCGATGC
GATGCCTCACGTTAACATTCTGTTTGGAGCACCGCCGCAACTCCGTACGT
TTATTTGGCGAGATAATCTTTCTCAGACCGCAAACTCTCAGTGTTATGCT
GGCAGCAGTCGACTTTCTTTTTTCACTTCGTCGTTGGTGATGCGGTACTC
CCCCCCCCCCCCCCTCCTCTCTACTTGCTTACATGCACGTCTCCCGTAAC
CTTGCCCTCTCCCTCTGGTTCCCCTCTGCCGGTCCACCCTCGTACACATG
ACCATGATGCCGCCTTTACCTTCTTCCCAACGGTCAGAATCGCAGCGGGC
GGCAAGCCTGCAGGCGTTGCTGCGGGTCGGGGGGGGGGGGGGCGGATACA
GCGCCATAATACCCTCTCCCACCACCACGTTAGCGTGTCGTGCGCTTGGG
GCATCGAGCCACTTCGGTGACCCGGTTGATGGAGGAGTAGCAGTAGCGGT
GCCGGCACCAGCAGCATCAAGCAGAGGCACCAAGTCACCATGGGGAACAA
GATGAGCGTCTCGTCGACCTTTTCTCATGCAAGCAGCGGTGGCAGCAACA
GCAGGCGCGGCAGAGGCAGCAGCAGCAGCTACAGCAGAAGCAGCAACAGC
AGCAGCAGCAGCATCAGCAGCATCAGCAGCATCAACATCGACAGCAGCAG
CAGAAGCACCAACATCGACAATTCCAGCAGGGGTGTGGACGGCGGCACCG
CCTACTCCTCCTCTACCCTAACACCTCCGCGGCTGGACGACGACAGCGGC
AGCAGCGGCGGGAACACCCACCGGTTTTACCATCCGGAAACCCCCCGCCG
AGAGACCGCTTTCCACTGCGCGATATGGCCGCAGCTGCGCACGCCGCCGT
CGGCGGAATCTTCGGAGACGAGCAGCCTGTCCGGTGGGGCGACGGAGGGC
GGTGGGAGCATGTTCGTCGCCAGTAGTACCCCCGCTGATTCTCCATCGAG
GACGGCGGCGGCGGCGGCGGCAACGGCGAGCGTCTCTACCCCGAGGGGTG
CTTTTGGTGCTGCTGCTGAGGTTGGTCGCGAGCGGTACCCGATGTTCTCG
CTGTCTTCGCTCCGACGGGTGGGGGGCGTGGCGGCGGCATTCGGGGGCTT
TTCTACGGACAGCGACAGCGGCGGCGGCGGTGGTAACGGCAGCAGCGACA
GCGACAGCGACAGCAGCGATAGCAGCGACAGCGACAACGGCGACCACGAC
AGCAGAGGGTTCAGGAGCGCCGAGGGCAGCTGCAGCGACAGCAGTAGCAT
CAGCTGCAGCACGCGGAGCATCGGCTTCAGCGACGACGACGATGGCGACG
GCGACGGCGGCGGCGGTGGCGGCGGCGGACACCCAAGGGTGTCGGACACG
GGGGTGCAGGGATACTTCACCCGATCTCGCAGGCGCTTCTCGACGCAGCA
ATCAGGGGGGACACGGGAAGGGCTGGCTCTCGAGGGCTGGGGCGGTAGCG
CCAGGGGGGCTGCGCGGGAACAGGAGGAGGTCGGAGGGGCTGGTTTTTCG
TGGGATTCGGGGAGAGGTGAGCGGACGGTAAGGGTGTGAGTGAACGCGCG
CTGCTTGCTACGGAGCAAGCAAGGGGAAGTGGGTAACAACACGAGCGGGA
TGATGTCGAAGAGTTGACTTGAGTGCAGACGAGGCTGTGCTTGAACTGCC
GTGGTGTGCGCCGAAGATGACGATGATCTCTACAGCGCGTGTTGTTTTCG
CTTCACTCACCCCGGTGCAAGACGTTGTGGTAGAGGCGTGTGCTGTGGTG
GGTCGTGGTTGCAAGCGGTGTGCAATCAGGCACTGCTGAAGTTTGATGAT
GCGAGGCCGGTGCGGGGAACACGAGGTATGCATATCCACCGTCCGTATGA
CACCCGATGGAATATGCACGCCACACTCCGGGGGTGAATCTCGGAAGGTC
GCTGTCACGGACCGAAGAAGGCGATGCCGGCATTCACAGATGGCTCTTTT
CAGGAGGGCTCTGTGGCACAACAGCTTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTCTTAACATTAAAAAAGAACGTTCCGGGTTCTGCC
ACATTTAGTGAACACGTTTTTCGTGCGTGGAAGGTACTGAGATCGGAAAA
CCGGCCCAGGGCATGTGTGGTGTCGCACGGAACACACTTTTCCCTCCCGC
CACCACGATGCCAATTTTTGGCTTTCTCTACCAACGCTCGGTCTCTTTGC
CTTCCCTCGTTCTCCCTCCCCAAACGTTCCATCACCTCCAATGCCACCAA
CATGGGCCGAACTCCCCCCCCTCCCCTTACCTGCCACCACCGTTGGTCAA
ACTCTCCCCCCCCCCCGCACCTACATAGTAGGAAGTTGGTCATTGGTGAT
CGGTCCTGTGGGAAAAAAAAAACGGTCCTCTCGAGGACGCGTGGTCGGTG
GTCTTTTCGCGTGCATAGCATGAGTACGCCCCCTTCACTTACGTACCACC
ATGCCCGACATCCCCCGGCCGACACGCTCCCGCCCTCCGGCAGCACCAGC
AGCGAGGGCAGCACCGTCGACAACTCCCGCGAGGCGCTACATACCGGCCT
TTAGTTTCGGTTCCTTGACGTCGAGATCGCGGAGAGGGTCCACGGGGGTG
ACGAGGTCGTTCGACGAGCGGGGGGAGAGGCGCGGAAATGCACCGCCCAG
ACAGGCTCTGCACCTGGCACCACCGGATTGGACTGGCACCCCACCGAGGT
CTGGACCGCAGCGATGTCCTAGGTGAGATCAGTCTCTCAAAGACTTTGTT
GTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTTCGTTT
TTGCGTTGGCCCGACGCCAGTCGTAGGAGGTAAGTTATGTGGCTGGGGGG
TGTATACTCGTAGCCGTGCATGCCGTAGTCGTAGGACCGTTGGCCTCGCA
TCCCTAGGAAGAACGCCGGGTTCTCACCGGACCAGGCTAAATTGCGCATC
CATCACCAAGGAGCGCGAAGAGCCGTGAGGCACAATTCGGAGAGACGCAT
GGAGGGTGCGCTGCAAGGGTTGTCGGCATCTTGTCTTCACGTCCTTGCGT
ACGGATTGTTGTTGTTGGGGAGGAAGAAGGGGCAAAAGTTGTAACACGAA
GCTTGTGTTGACGGCAAGTACTGGTCACGGGGGTCAAATGCCTAAGCGAC
GCCTCTCTCTCTCTGCCTCACGGCATGGTTCGAGGAGCGCATGCTCCGAC
GATGCCGCTGTAGGCCCTATTTGCAGACGAAGGGAAGCAACGAACGGGCA
CGATTCATTCGGTACGACGACCTTCATTTTGTGTTTCCTCCCCCCCCTCC
CAAACATTGCTTGGGCCGTACACGTGTGTGACAACTTGGACTTGGTCGTT
GGCTGAACCGCCGTACGCTGGGCTCTCGGGGACAGCAGGGCCACGACGGT
CACGGAGGAGTCGACCCCAACGGCCACCCCAGCGGCGGCTTCCGCCGCTA
GCCCTGCTTCTTCTTCCGCCGCCTCAGCCTCTGCTTCTCCCGTCGGCGGT
GGCGGCGGCGCCGGCGGAGGCGGCAGCGGTGGATTTTCTGCCGCCGCTGC
TGCTACTGCTGCCTCCTCCTCCCCCTCCTCCTCCGCGACTGTGTTAGCAC
CGACGTCCTCCTCTTCACATTCTTTGCGGACCACGGCGGCGGCGGCGACA
AGGGGAACGCCTTCGACGGTGTCGATGCCGTCGTCGTCGGTGTCGACCTC
GTCCCCGGAGGAGGAGCGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNN
back to top

Coding sequence (CDS) from alignment at chr_28:1074613..1082620-

>Ec-28_001130.1 ID=Ec-28_001130.1|Name=Ec-28_001130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1671bp|location=Sequence derived from alignment at chr_28:1074613..1082620- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGAACAAGATGAGCGTCTCGTCGACCTTTTCTCATGCAAGCAGCGG
TGGCAGCAACAGCAGGCGCGGCAGAGGCAGCAGCAGCAGCTACAGCAGAA
GCAGCAACAGCAGCAGCAGCAGCATCAGCAGCATCAGCAGCATCAACATC
GACAGCAGCAGCAGAAGCACCAACATCGACAATTCCAGCAGGGGTGTGGA
CGGCGGCACCGCCTACTCCTCCTCTACCCTAACACCTCCGCGGCTGGACG
ACGACAGCGGCAGCAGCGGCGGGAACACCCACCGGTTTTACCATCCGGAA
ACCCCCCGCCGAGAGACCGCTTTCCACTGCGCGATATGGCCGCAGCTGCG
CACGCCGCCGTCGGCGGAATCTTCGGAGACGAGCAGCCTGTCCGGTGGGG
CGACGGAGGGCGGTGGGAGCATGTTCGTCGCCAGTAGTACCCCCGCTGAT
TCTCCATCGAGGACGGCGGCGGCGGCGGCGGCAACGGCGAGCGTCTCTAC
CCCGAGGGGTGCTTTTGGTGCTGCTGCTGAGGTTGGTCGCGAGCGGTACC
CGATGTTCTCGCTGTCTTCGCTCCGACGGGTGGGGGGCGTGGCGGCGGCA
TTCGGGGGCTTTTCTACGGACAGCGACAGCGGCGGCGGCGGTGGTAACGG
CAGCAGCGACAGCGACAGCGACAGCAGCGATAGCAGCGACAGCGACAACG
GCGACCACGACAGCAGAGGGTTCAGGAGCGCCGAGGGCAGCTGCAGCGAC
AGCAGTAGCATCAGCTGCAGCACGCGGAGCATCGGCTTCAGCGACGACGA
CGATGGCGACGGCGACGGCGGCGGCGGTGGCGGCGGCGGACACCCAAGGG
TGTCGGACACGGGGGTGCAGGGATACTTCACCCGATCTCGCAGGCGCTTC
TCGACGCAGCAATCAGGGGGGACACGGGAAGGGCTGGCTCTCGAGGGCTG
GGGCGGTAGCGCCAGGGGGGCTGCGCGGGAACAGGAGGAGGTCGGAGGGG
CTGGTTTTTCGTGGGATTCGGGGAGAGCAGCGAGGGCAGCACCGTCGACA
ACTCCCGCGAGGCGCTACATACCGGCCTTTAGTTTCGGTTCCTTGACGTC
GAGATCGCGGAGAGGGTCCACGGGGGTGACGAGGTCGTTCGACGAGCGGG
GGGAGAGGCGCGGAAATGCACCGCCCAGACAGGCTCTGCACCTGGCACCA
CCGGATTGGACTGGCACCCCACCGAGGTCTGGACCGCAGCGATGTCCTAG
CAGGGCCACGACGGTCACGGAGGAGTCGACCCCAACGGCCACCCCAGCGG
CGGCTTCCGCCGCTAGCCCTGCTTCTTCTTCCGCCGCCTCAGCCTCTGCT
TCTCCCGTCGGCGGTGGCGGCGGCGCCGGCGGAGGCGGCAGCGGTGGATT
TTCTGCCGCCGCTGCTGCTACTGCTGCCTCCTCCTCCCCCTCCTCCTCCG
CGACTGTGTTAGCACCGACGTCCTCCTCTTCACATTCTTTGCGGACCACG
GCGGCGGCGGCGACAAGGGGAACGCCTTCGACGGTGTCGATGCCGTCGTC
GTCGGTGTCGACCTCGTCCCCGGAGGAGGAGCGCCTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNN
back to top
Synonyms
The feature 'Ec-28_001130.1' has the following synonyms
Synonym
Esi181_0093
Esi_181_0093