Ec-28_000720.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000720.1
Unique NameEc-28_000720.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length355
Homology
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 587 bits (1513), Expect = 7.010e-208
Identity = 320/354 (90.40%), Postives = 324/354 (91.53%), Query Frame = 1 
Query:  325 MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEERSWGQ 1386
            MEGLPERGRRAFWG K HP+TTPVV EGPLPRQHREYATAERAAMDEEVGQAVEKDNERV                 SAIVDIACHDNVRTWLETSF+WIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE+EAMNSGEADRTECIIRM TLI GAVAAVLAIVAVTIYARRALKQALVESELDANADK E A HEGSATDVE GSSP EFKEA+DSGG  GE RSWGQ
Sbjct:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVXXXXXXXXXXXXXXXXXSAIVDIACHDNVRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDVECGSSPGEFKEAVDSGGSGGE-RSWGQ 353
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI)

HSP 1 Score: 494 bits (1272), Expect = 1.960e-172
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1 
Query:  325 MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 1095
            MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE
Sbjct:    1 MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 257
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.200e-57
Identity = 104/219 (47.49%), Postives = 153/219 (69.86%), Query Frame = 1 
Query:  607 TSF-DWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANA 1260
            TSF +W+EDNP  G + FAL++  +T+ F+PG LLT+GAG+ FGRALG G G+L GS+AVL GA V  ++AF LGR+VL EQAQ    ++++L AVN AI+  G+K++ILLRLSP+VPFS FN++ G+T V  RDY +G VG +PGT+AFV+IG + +G + ++              ++++  I G +A V+A+V ++IYA+RAL + L E  ++  A
Sbjct:   75 TSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEA 293
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.460e-57
Identity = 117/265 (44.15%), Postives = 176/265 (66.42%), Query Frame = 1 
Query:  508 QRIKRIMM-FVVVALVVSAIVDIACHD--NVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGT-----MNEEEAMNSGEADRTEC-----IIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANAD 1263
            ++I+++ +  V+V L++  IVD +     NV   L     W+EDNP  GV  FA ++   T+ F+PG LLT+GAG+ FGRALG G GV  GS AV+LGA +  +IAF LGRYVL + AQ    +++I+ AV+ AIE  G+K+ +LLRLSP+VPF+ FN+I GLT +SL+DY +G +GI+PGT+A+V+IG+S +G       +EE+  N+ +AD  E       + ++ +I GA+A V+A+  ++ YA++AL + L E EL+ N D
Sbjct:   22 EKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEENQD 286
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.410e-49
Identity = 103/269 (38.29%), Postives = 166/269 (61.71%), Query Frame = 1 
Query:  475 QAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAG 1281
            QA EK   R+   IK  +  ++V  ++  IVD A   ++RT +E+  +WIEDNP  GV  F  ++ ++T+LF PGL+LT+GAG  F  ALG G GV+  + AV +GA    + AF +GRY+L +      K+Y I  AV+ A++  G+++MILLRLSPL+PF+  N+I G+T VS RD+ +  +GI+PGTL +V++G+S AG++ +  +     A      +R++T++ G+V  +L +   + YAR+ L+  +   E +A   + E+ G
Sbjct:   21 QAREKRKARL---IKIALGLLLVGFIIYVIVDFATSKHLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSS-AGSLTDSSSGGDNSA------VRILTIVLGSVFGILGVCVTSYYARKELQNVISRREAEAAQLEVEDIG 279
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: D7G9F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F2_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 5.950e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query: 1102 MNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEERSWGQ 1386
            MNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEERSWGQ
Sbjct:    1 MNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEERSWGQ 95
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 174 bits (442), Expect = 5.230e-47
Identity = 97/245 (39.59%), Postives = 156/245 (63.67%), Query Frame = 1 
Query:  517 KRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELD 1251
            K I+  V+V L+V  IVD   H  V+  +E    WIE+NP  G+ VF  ++ ++T+LFVPG LLT+G+G  F  + G GFGVL  ++AV +GA +  ++AF LGRY+L +  ++  K+Y +  A++ A+E  G+++MILLRLSP++PF+  N+I G+T VS + Y      I+PGT+ FV++GAS AG++     ++SG    T  ++ + T++ G V  V+AI   + YA++ L + L + + D
Sbjct:   46 KIIVGLVLVGLIVFIIVDSVTHGFVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGAS-AGSL-----VDSGNGGDTP-VVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQEKTD 283
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 174 bits (440), Expect = 9.710e-47
Identity = 89/233 (38.20%), Postives = 146/233 (62.66%), Query Frame = 1 
Query:  535 VVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQAL 1233
            ++V  ++  I+D+A   N    +    DWIEDNP AGV  F  ++ ++++ F+PGL+LT+GAG  F  ALG G G+   +VAV  GA      +F +GRY+L +      K+  I  A++ A++  G+++MILLR+SPLVPF+ FN++AG+T +SLRDY +G +GI+PGTL ++ +G+S    ++   + N       +  +R+++++ G V AVL + A T YA++ L + L
Sbjct:   35 ILVGFIIYVIIDLATTKNTMRIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSSGN-------DSTVRIISIVLGIVFAVLGVYATTYYAKKELNKIL 260
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 169 bits (429), Expect = 2.540e-45
Identity = 101/266 (37.97%), Postives = 162/266 (60.90%), Query Frame = 1 
Query:  484 EKDNERVNQRIKRIMMFVVVALVVSAIVDIACHD--NVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTEC------------IIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVE 1239
            EK  +R N+ IK  ++ ++V +++  ++D       +V   L +   W+E++P  GVV FA ++ L+T+LF+PG +LT+GAG+ FGRAL                      IAF LGRYVL + AQ    ++ +L AV+ AIE  G++++ILLRLSP++PFS FN++ GLT+V  R Y+LG VG++PGT+A+V+IG S AG + + +   S E++                ++ +V L+ GA A VLA+V +T+ +RRAL++ L++
Sbjct:   39 EKTGDRKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADD-GSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMK 303
[Close]
BLAST of Ec-28_000720.1 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.560e-45
Identity = 96/238 (40.34%), Postives = 153/238 (64.29%), Query Frame = 1 
Query:  535 VVVALVVSAIVDIACHDN-VRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESE 1245
            +++A +   IVD A  D  V + +E   DW+EDNP  GV  F  ++ ++T+LF+PG +LT+GAG  F  A G G GVL  S+AV +GA    + +F LGRY+L +   +   +Y++  A++TA+  NG K+M LLRLSP++PF+  N+IAG+T VS RD  L  + I+PGT+ +V++G+S AG++++ E+  SG+ D+T  II   T++ G V  +L I A + YA++ L   + + +
Sbjct:   27 ILLAFIAYVIVDSASGDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSS-AGSLSDSES--SGD-DQTTTII---TVVFGIVFGLLGIAATSYYAKKELNAVIAQQD 257
The following BLAST results are available for this feature:
BLAST of Ec-28_000720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JID7_9PHAE7.010e-20890.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9F3_ECTSI1.960e-172100.00Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
D7FIK1_ECTSI1.200e-5747.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA1.460e-5744.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2MII1_9STRA1.410e-4938.29Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
D7G9F2_ECTSI5.950e-49100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2A6Q3_TRICV5.230e-4739.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4W131_9STRA9.710e-4738.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3YEX9_HETAK2.540e-4537.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2JYW7_9STRA6.560e-4540.34Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:681144..687459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score496.1
Seed ortholog evalue1.3e-137
Seed eggNOG ortholog2880.D7G9F3
Length1424
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categorysignal anchor
Gene idEc-28_000720.1
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000720Ec-28_000720Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 681144..687459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000720.1Ec-28_000720.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 681178..687134 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000720.1.5Ec-28_000720.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 681144..681330 -
Ec-28_000720.1.4Ec-28_000720.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 682116..682256 -
Ec-28_000720.1.3Ec-28_000720.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 683051..683315 -
Ec-28_000720.1.2Ec-28_000720.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 683723..683909 -
Ec-28_000720.1.1Ec-28_000720.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 686816..687459 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0007203UTR:Ec-28_000720.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 681144..681177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000720.1CDS:Ec-28_000720.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 681178..681330 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0007205UTR:Ec-28_000720.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 687135..687459 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000720.1 ID=Ec-28_000720.1|Name=Ec-28_000720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=355bp
MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVG
QAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWI
EDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGS
VAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKV
MILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGAST
AGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALK
QALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEER
SWGQ*
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spliced messenger RNA

>Ec-28_000720.1 ID=Ec-28_000720.1|Name=Ec-28_000720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1424bp|location=Sequence derived from alignment at chr_28:681144..687459- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCCCCAGGTGCCAATAAATATTGAAATATTGTAAGAAAAAAAAAACAGGG
TGATCTGTGATGCCGACGTCCTGGTCCTGGATGATCATTTGACGCCCCAC
AATCTATCCATGCTTCTACCAGAAGACACACACCGAACAGCTGGGACCAC
GAAACGAAGCTGCTAGCCCGGCGTCGTGACGGGATCGTGCCGTACGGGTG
CCCGTGTGTTTAGCTTCTCTGGCGACACGTAAAAGACCGGCGGATTGGTC
GTCTTTTTTGCCCGTGTTAGCCCGGCCTGCTGCTTTCCTTCCCCTCTGTA
GAGAGCAGAAGAAGACTCCAGCAACATGGAAGGGCTTCCAGAGCGAGGCC
GCCGTGCGTTCTGGGGGGGGAAAACGCACCCAAGAACCACACCGGTGGTG
ACGGAAGGGCCGTTGCCGCGCCAACACCGCGAGTATGCCACCGCTGAGAG
GGCGGCGATGGACGAGGAAGTCGGCCAAGCGGTTGAGAAGGACAATGAGC
GAGTCAACCAACGCATCAAGAGGATAATGATGTTCGTGGTGGTTGCGCTG
GTAGTCAGCGCGATTGTAGATATTGCCTGCCACGACAACGTCAGGACGTG
GCTTGAAACGTCGTTCGACTGGATAGAGGACAACCCCAAGGCCGGGGTCG
TGGTTTTCGCCCTGCTCTTCTGCTTGTCGACCCTGCTTTTCGTGCCCGGG
CTGCTGCTGACGATCGGAGCGGGGGTGGCCTTTGGAAGGGCTCTCGGGTT
TGGTTTCGGGGTCCTGTGGGGCTCCGTGGCTGTGTTGTTGGGAGCGGTGG
TGGCGTGTGTCATCGCCTTTTACCTCGGTCGGTATGTGCTGCACGAGCAG
GCGCAGAGCTGCGCCAAGCGCTACCGGATCTTGAGCGCGGTGAACACCGC
GATCGAGCGGAACGGGGTTAAGGTCATGATCCTGCTGCGGCTCTCGCCCC
TGGTGCCCTTCTCCGGCTTCAACTTCATCGCGGGCCTGACGAAGGTCTCG
CTGCGGGACTACCTGCTGGGCACGGTGGGCATCGTCCCGGGGACCCTGGC
ATTTGTATACATCGGGGCGAGCACGGCGGGCACGATGAACGAGGAGGAGG
CGATGAACTCTGGGGAGGCGGACAGAACGGAGTGCATAATCAGGATGGTG
ACTCTGATCGGCGGCGCCGTTGCCGCCGTCCTGGCGATCGTGGCGGTTAC
GATCTACGCCAGGAGAGCTCTCAAGCAAGCGCTAGTGGAGTCAGAGTTGG
ACGCCAACGCAGACAAGGCGGAAAACGCGGGACACGAGGGAAGCGCCACA
GATGTCGAGTTTGGCAGCTCCCCGGAAGAGTTCAAGGAGGCTTTGGACAG
CGGCGGGGACGAGGGGGAGGAGAGATCCTGGGGCCAATAGGCGGGAAGTA
TTGCAATACCATCGCGGGGGGGGG
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protein sequence of Ec-28_000720.1

>Ec-28_000720.1 ID=Ec-28_000720.1|Name=Ec-28_000720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=355bp
MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVG
QAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWI
EDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGS
VAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKV
MILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGAST
AGTMNEEEAMNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALK
QALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEER
SWGQ*
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mRNA from alignment at chr_28:681144..687459-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000720.1 ID=Ec-28_000720.1|Name=Ec-28_000720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6316bp|location=Sequence derived from alignment at chr_28:681144..687459- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCCCCAGGTGCCAATAAATATTGAAATATTGTAAGAAAAAAAAAACAGGG
TGATCTGTGATGCCGACGTCCTGGTCCTGGATGATCATTTGACGCCCCAC
AATCTATCCATGCTTCTACCAGAAGACACACACCGAACAGCTGGGACCAC
GAAACGAAGCTGCTAGCCCGGCGTCGTGACGGGATCGTGCCGTACGGGTG
CCCGTGTGTTTAGCTTCTCTGGCGACACGTAAAAGACCGGCGGATTGGTC
GTCTTTTTTGCCCGTGTTAGCCCGGCCTGCTGCTTTCCTTCCCCTCTGTA
GAGAGCAGAAGAAGACTCCAGCAACATGGAAGGGCTTCCAGAGCGAGGCC
GCCGTGCGTTCTGGGGGGGGAAAACGCACCCAAGAACCACACCGGTGGTG
ACGGAAGGGCCGTTGCCGCGCCAACACCGCGAGTATGCCACCGCTGAGAG
GGCGGCGATGGACGAGGAAGTCGGCCAAGCGGTTGAGAAGGACAATGAGC
GAGTCAACCAACGCATCAAGAGGATAATGATGTTCGTGGTGGTTGCGCTG
GTAGTCAGCGCGATTGTAGATATTGCCTGCCACGACAACGTCAGGACGTG
GCTTGAAACGTCGTTCGACTGGATAGAGGACAACCCCAAGGCCGGTGAGT
GCGCTCTCTGTATTGTGTAAGGCACGGGGTTCTGGGTAATCACAGCAGTC
CTCCCGCACATCCCACAGACTGGCGAGCATCTTCTCTTCAAATTTAAACA
GCAGCGTGAAAGCGGCGAGTTTCGTAATCCACGTGTACATGTGTTACATA
GCAGCTAGCAGCGTTCGGTGAAGCGGGCACGAGGCTAGCGTTACGAACGT
TGAGAATGCGCAGCAGAGGAGAGGATAGCACGCTACATGTCCAACATTTG
TCGTTCGCCTCGAGTGCAGATATTTTGCGTCATCAAGGTCCTTGACTCAA
AGGGGGCAAAAAGCCTTTACTCCTTGTTTTGTAAGAGTCGCAAAGAGGAG
AAAACATTACGTACAAGGTTGTGTTTAGTACAGCAGTACAGTACGTTTAG
TACAGTATTGAATTTAGTACTAAACGTACTCTCTGTAGTATAGCATCACG
AGTTGTACTAAACGTGCAGTATAGTACAATACGGAGAGGTGTACTCAAGC
GTACTACTGGTTTAGTACAATATCGAGAGCTGTACTAAACCCAGTATAGT
ACAGTACATCCAACAGTACTACTGTTGTACTAAGCCGAGTATAGTATCGA
TCCAAACCCGGTACTAAACGCGGAGTATAGTACAGTACGAAGAGCTGTAC
TAAACCTGTTGATTTTAGCACAGTACGCAGAGCTGTACAAAGCCTACTAT
TGGTTATAGTACAGCAGTGTCGAGGGCTGTACTAAAGTGTACTATTGGGA
TAGTACAGTATCGAGAGCTGTACTGAAGCGTACTATTGGGATAGTACAGT
ATCGAGGGCTGTACTAAAGCGTATTATTGGGATAGTACAGTATCGAGAGC
TGTGCTAAAGCGTACCATTACCATTGACTTTGGGGACAGTACAGCAGTGT
GGAGACCCATATTTTTGCGTACCAGGACGCACACATTAGAGAAGCGTTCA
AGTGAAGCAAATAGACCGAAAGCAGTACGAATAGAAAGACAATCCGCCGG
TGTTCCTCGCCCCGTCCTTCCCTTTCGAGGTCTGGTGGCGGCCATAATAA
TTCCGCCTCAGCCGTTACTTCACGCAGCACCGAGGGCAACAAAACCAAAA
AGTAAAAGCGAAGTACCAACACGTATACTATATGTACTGACTAATGCTCG
AGTACCCTGAGTAGAGGACCGAGAGTGCTGTTGCAGCTGCGTGCTCTGTG
TGGACGCACACACACACAGAACAAAAACACGCCGCATTCTGCACAAGAAT
GACGTCATCAACACGCTCTTTGGCCGGAATCCGTGCAGATCCGGGTAGAT
ACTCGGATTACTATCCGAACGAGTAGAGTACAGTACTGATAGTACTACTA
AACGTACTGTTGGTTTTAGTATAGTACTGGGAGTTGTACTAAACCTGCAG
TATAGTACAATACGGAGAGGTGTACTCAAGCGTACTATTGGGGTAGTACA
GTATCGAGAGCTGTACTAAACCCAAAAGTATAGTACAGTACATCCAACAG
TACTGTACTAAGCCGAGTATAGTATCGATCCAAACCCGGTACTAAACGCG
GAGTATAGTACAGTATCGAGGGCTGTACTAAAGCGTACTATTGGTTTAGT
ACAGTCTCGAAAGCTGTACCTGTTACTAAACCTACTATTGGCAGAGTATA
GTAAAATACTCGAGTAAGATACTCGAGTACGTCCAGTTTGTACTGTACTA
AACACAACCTTTTTGCATACAATACTACAAGCAGTATACTCCAATGTACA
GCAGTACAGAGTACTGATATAAATATCTTGTATTCATAGCAGCAGCTGGC
ATGACTGATTCACAGATGAGTTGCAATTCAGTGCACAGGCTTAAGCAAGC
TCAAAATAAGAAATAAGCCCAGTTTCCATCGAGTTTCCCTCCACTCACTG
AAAAGACTTCAACACATGCCTATGCCTTTCGACTGCTGTGGTATCTCGAA
CGGTTGTCTTTGTTTGAGTGAGATTCATGGATTACTTTTCATGTTTACAA
ATAATATGGCATGCACTTCTTAAGAAAGTACTGAAAGGGAGAAATCGTTG
TAGCGCTGCTCGGAAAGCCGTGGAAACTCACTCCGCTACGCTTGCATGTG
AATTCATTGGCTTAAACTAAATAACTGCTGCCGGTCGATGTGTATTTGGT
GTACTTCTTTATCAGCGCTCACAAGGCAACAAGCACGTTTGTGCCGTTTA
CATCAACCCGTGGGCACACGAAAGGGGTCCTCTCTCTGAGCCCCCCTACT
GTACCCCGTACCCACCCCTCCTGCGGTACTTTTCCTTGAAAATTTTCCCA
AGTTTTTATACCAAAAGAGTGCAGCACTCTCTCCCCTCTGTGTACACACG
AACAAGCGCTTTCCACCCAGGCCAGAAACGGAAGCGCGGAAGCGCGAGAA
AAACGCAGTTTGCAAGACGGGCCACTCACGCCGGAATTCGAACCCCTGAC
CCTCTGTCCATTAAGTACTAAAAATGGTACGTTTTATTATTTTAAGACAC
AAACTACTGGTGGTACGCATGTAGCCAGAGATATGCACTCATTCAACGAT
ACACGATAGAGAGATATGCATCCATAACCGGGGAGATATAGCGGCCCGCT
GCGTGGGGCTTCGTAGAAACACAGGTTGGTCCTGTAATGCTATGGATTAC
TTATCCGCCGCTGGTGGAGTATGTATCATTTACGTCTTTGTAAGAACATG
CAGTCGAACAGTCCGACCCTGCTGTCTCTTTCTCGGGGAAAATGGTCAAG
AGCTTGCTCGTGAGGAAGCTCAACCGTTTTCCGAGTGTATAATCACTACG
AGTGTTAGTCACTGTACCTCGGTTTTCAGTCAACAGGAAACTTTTGAGCA
TAACGCTAAGCAAATCGCTCCTCTCTTGTGCGTCGCTGCTGCTCTCGCAG
GGGTCGTGGTTTTCGCCCTGCTCTTCTGCTTGTCGACCCTGCTTTTCGTG
CCCGGGCTGCTGCTGACGATCGGAGCGGGGGTGGCCTTTGGAAGGGCTCT
CGGGTTTGGTTTCGGGGTCCTGTGGGGCTCCGTGGCTGTGTTGTTGGGAG
CGGTGGTGGCGTGTGTCATCGCCTTTTACCTCGGTCGGTGAGTACTACTT
CGAAGTAGTGTCATAGGAGTTTCGGTTTCTCCGATCGCAGTGCGTACGAC
TCTGCCTCAAACAGAGCGATTCACCAACATTTCCTCACGAGAGGATAGCC
GGGAGTTGCACCCTCTCGTCTCTTTTCGCCGATTTTGCGAGCCGATCCAA
GATTTTCCGAAAGCGTACGTACAATCGCTGCAAAAACTATTTACCCGTCC
GAGATGAACCACACCACAGACGAATGGATGTGTTGGAAATAGTCGCATTT
TCGGCCGGATGGGTTTGCTTGCAACAGCAGCAACCCGCGTTTTTCTCCGA
CCCACCTGCACCGTCCATCCGGACGTACTGCTGACCTTCCTGCCCACGTG
CTTGGCCGTCTCTAATGTTGTTATCTCTACCAATCTTGTTTCAGGTATGT
GCTGCACGAGCAGGCGCAGAGCTGCGCCAAGCGCTACCGGATCTTGAGCG
CGGTGAACACCGCGATCGAGCGGAACGGGGTTAAGGTCATGATCCTGCTG
CGGCTCTCGCCCCTGGTGCCCTTCTCCGGCTTCAACTTCATCGCGGGCCT
GACGAAGGTCTCGCTGCGGGACTACCTGCTGGGCACGGTGGGCATCGTCC
CGGGGACCCTGGCATTTGTATACATCGGGGCGAGCACGGCGGGCACGATG
AACGAGGAGGTACTGCTGTATGTTGTGCGTGCTCGACAGCCGATTGCACG
GTATGTATGTATGTATGTATGTTGACCGACAAACGATTGCATGGACTGCT
GCGGCGCGTTGCTGCGGCCCACCGCTGATGCGGTGGTACGGGGTAGGGCC
ATCGGAGCGGAGGGGACCGTTTGCAGCTGACCCCGTCGGCTGTATGTAGC
AGCAGCACGCGGTTGAGTTGTACTTACGGATTGGGAGACGAGAACAGTTA
CAGTTTCCCTCTGCGTGGATGCACAGCTCCCTCTGCGTCGACACAGAGCA
GCTGCTGAGGATGAATGATTTTTACTTTGAACCGTGTTCTTGGCGGCGCT
CGGCACTGGGTTCATGCGTATCCTCTGTGCGAAATTCGGAAGAAGAGCAG
CTAGGTCGAGCAGCTCGGTGAACCCGGGTGCGCTAGGCTCAAGCCCTCCC
CTCTAGCCCCCGCCGTTCGTCAATTGCAGTGTAGGCGTGTAGTTGTGGAT
TTTTTGTCTTACGTGCGTGGCTTGAGCTGTCGGTAGCACTGGCCGTGCTG
ACACGCGTGCTGCGCAGTAGGCTCGTTGCCTCACGTCCGATTTGTTGTAC
TCAAGGCATGGTTTTCACTACAGTGCAGCCTGTGCCCTAAGGCGCCTGTT
CCCACTTTTGTATCCTGAAGAGCGCGAGAGTTCCGTCTTGAACGCTGCCT
TCAGCGTCAGTATTGGATGCTGAGACGTTCGAAAGCTGAACGTTTCCACC
ACCATTTGATCCTGTAACAATAACCCTTACACGCACGTTCTCGGATACCG
CAGGAGGCGATGAACTCTGGGGAGGCGGACAGAACGGAGTGCATAATCAG
GATGGTGACTCTGATCGGCGGCGCCGTTGCCGCCGTCCTGGCGATCGTGG
CGGTTACGATCTACGCCAGGAGAGCTCTCAAGCAAGCGCTAGTGGTGCGT
CGGTAGCTGCTGTTGTAGGTTGTTGTTTGTGTAGGTGTTAGTGTTGTTAT
CGTTCATGTTGTCGTCCATGTCGTCAAATAAGTGCCGTGCCAACGTGCCG
CAAGTTTGTGCTCTGGAAACGTCTGTTTCACCATCGGCATCTTCCGCACC
GTGTTTGTAGCTCGCGGTTCCGCCACCTCATTGTTTCATTATCTGTAGGG
CAATGGGTTTTTTTTTTGTGTCGAGTTGGGGATCCACCACGTCTTTTGCA
GATGGATGCTGCCGTGGTTGGTTCCGCAAAGCTTACTTACTGACGTTACC
GGGGCTGGTGTTGTCCTCTTCGCTTCGAGCCTGATGCCGCTCTTTTGGCC
TGCCTCGCTCGTTGCATCTCCTATCTCTGGGTGATCAGACACGTCCGTAG
TGTTTCCACTTACGAAACAAGATTCAAGATACGGGCTTTTCGCTCGAGAC
ACGTTTCCAGACAGTTCCCCGACCATTCAACAATCTCTTACGCTTTGTTT
CTTTCTGTTCGTTGTTGTCTTGGGATGTATGTCGTCAAACAACACGATAT
CTCAGCTGCGCTCTTTATTTTTTTCAGCGGACGGCGACAAGCAGTCCCCG
CTTTGATCAATTATTCGTGCAACACGCAAGCGCATCTTGGCCTTTTTCAA
TTCGTGAAGTGTTTCGCCTGGGTCGTTTCATGCCTTTTCGTGCTCATCTT
GGCCTGTTTTCTTGTTTTCATAAATTGATTCGCCTGTGGGTGGTGTTTTA
AATCGCGAATGTTACTGTTCACTTCACAGGAGTCAGAGTTGGACGCCAAC
GCAGACAAGGCGGAAAACGCGGGACACGAGGGAAGCGCCACAGATGTCGA
GTTTGGCAGCTCCCCGGAAGAGTTCAAGGAGGCTTTGGACAGCGGCGGGG
ACGAGGGGGAGGAGAGATCCTGGGGCCAATAGGCGGGAAGTATTGCAATA
CCATCGCGGGGGGGGG
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Coding sequence (CDS) from alignment at chr_28:681144..687459-

>Ec-28_000720.1 ID=Ec-28_000720.1|Name=Ec-28_000720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1065bp|location=Sequence derived from alignment at chr_28:681144..687459- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAGGGCTTCCAGAGCGAGGCCGCCGTGCGTTCTGGGGGGGGAAAAC
GCACCCAAGAACCACACCGGTGGTGACGGAAGGGCCGTTGCCGCGCCAAC
ACCGCGAGTATGCCACCGCTGAGAGGGCGGCGATGGACGAGGAAGTCGGC
CAAGCGGTTGAGAAGGACAATGAGCGAGTCAACCAACGCATCAAGAGGAT
AATGATGTTCGTGGTGGTTGCGCTGGTAGTCAGCGCGATTGTAGATATTG
CCTGCCACGACAACGTCAGGACGTGGCTTGAAACGTCGTTCGACTGGATA
GAGGACAACCCCAAGGCCGGGGTCGTGGTTTTCGCCCTGCTCTTCTGCTT
GTCGACCCTGCTTTTCGTGCCCGGGCTGCTGCTGACGATCGGAGCGGGGG
TGGCCTTTGGAAGGGCTCTCGGGTTTGGTTTCGGGGTCCTGTGGGGCTCC
GTGGCTGTGTTGTTGGGAGCGGTGGTGGCGTGTGTCATCGCCTTTTACCT
CGGTCGGTATGTGCTGCACGAGCAGGCGCAGAGCTGCGCCAAGCGCTACC
GGATCTTGAGCGCGGTGAACACCGCGATCGAGCGGAACGGGGTTAAGGTC
ATGATCCTGCTGCGGCTCTCGCCCCTGGTGCCCTTCTCCGGCTTCAACTT
CATCGCGGGCCTGACGAAGGTCTCGCTGCGGGACTACCTGCTGGGCACGG
TGGGCATCGTCCCGGGGACCCTGGCATTTGTATACATCGGGGCGAGCACG
GCGGGCACGATGAACGAGGAGGAGGCGATGAACTCTGGGGAGGCGGACAG
AACGGAGTGCATAATCAGGATGGTGACTCTGATCGGCGGCGCCGTTGCCG
CCGTCCTGGCGATCGTGGCGGTTACGATCTACGCCAGGAGAGCTCTCAAG
CAAGCGCTAGTGGAGTCAGAGTTGGACGCCAACGCAGACAAGGCGGAAAA
CGCGGGACACGAGGGAAGCGCCACAGATGTCGAGTTTGGCAGCTCCCCGG
AAGAGTTCAAGGAGGCTTTGGACAGCGGCGGGGACGAGGGGGAGGAGAGA
TCCTGGGGCCAATAG
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Synonyms
The feature 'Ec-28_000720.1' has the following synonyms
Synonym
Esi0098_0030
Esi_0098_0030