Ec-28_000460.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000460.1
Unique NameEc-28_000460.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length218
Homology
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BLAST of Ec-28_000460.1 vs. uniprot
Match: D7FIJ1_ECTSI (Ammonium transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ1_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 3.000e-155
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 2 
Query:   11 MSTAAELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGGA 661
            MSTAAELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGGA
Sbjct:    1 MSTAAELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGGA 217
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: A0A6H5L6H3_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H3_9PHAE)

HSP 1 Score: 404 bits (1039), Expect = 1.290e-137
Identity = 199/216 (92.13%), Postives = 204/216 (94.44%), Query Frame = 2 
Query:   11 MSTAAELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            MSTAAELEDRL YLES  DG ASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYG DVGGFIGTDSFAFSG AT+Q+DG+G EIA WFF+WAFAATAATVVSGAVAERIKIAAYVQLSVL+TFLIYPVVVHW WSEGGWASP RCEDTTTA DYQLCREESR LLLGCGATDFAGAGVVHMTGG
Sbjct:    1 MSTAAELEDRLAYLESLTDGLASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGNDVGGFIGTDSFAFSGNATHQEDGQGAEIAQWFFEWAFAATAATVVSGAVAERIKIAAYVQLSVLITFLIYPVVVHWVWSEGGWASPRRCEDTTTAVDYQLCREESRGLLLGCGATDFAGAGVVHMTGG 216
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: A0A6H5JVJ2_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ2_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.960e-65
Identity = 119/212 (56.13%), Postives = 144/212 (67.92%), Query Frame = 2 
Query:   23 AELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            AELE+RL  L + +   A A DLD  WII   +LVF MQVGF+MLEVGS+S KNTKAVL+KN+ DA+LGAICWW +G G A+G D  GFIGT  FA  G  + +    G++ A W F WAFAAT+ T+VSGA+AER+KI +YV  ++ +T  IYPVVVHWAW   GWASP+R  D            E   LL GCGA DFAG+GVVHM GG
Sbjct:   18 AELEERLGQLYAES---ALATDLDVVWIIVSAVLVFFMQVGFAMLEVGSVSSKNTKAVLLKNIGDASLGAICWWLVGFGLAFGDDAHGFIGTSVFALHGGES-RFGTSGLKEAEWVFDWAFAATSVTIVSGAIAERVKIVSYVTYAIALTSFIYPVVVHWAWHPDGWASPYRTAD------------EGAPLLSGCGAADFAGSGVVHMVGG 213
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: D7FR22_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR22_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 5.480e-61
Identity = 110/196 (56.12%), Postives = 131/196 (66.84%), Query Frame = 2 
Query:   80 AQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDG---RGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            + D+D  W+++  ILVF MQ GF+MLEVGS+S KNTK +LIKN+ DA+LGAICWW LG+G A+G   G FIGT++F   G     DDG    G   A W FQWAFAATAAT+VSGAVAER+   AY+  SV++T  IYPVVVHW W+ GGWAS  R  D                LL GCG  DFAG+GVVHMTGG
Sbjct:   26 SDDMDIFWLMFGAILVFFMQTGFAMLEVGSVSIKNTKNILIKNIGDASLGAICWWLLGYGVAFGDTSGKFIGTNNFDLKGALFEADDGTLTNGYSYASWLFQWAFAATAATIVSGAVAERVSFNAYIIYSVILTSFIYPVVVHWGWA-GGWASAWRETD----------------LLFGCGVIDFAGSGVVHMTGG 204
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: D7G888_ECTSI (Ammonium transporter (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G888_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.240e-60
Identity = 101/193 (52.33%), Postives = 127/193 (65.80%), Query Frame = 2 
Query:   89 LDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKA---TYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            +D+ W++    +VF MQ GF+MLE GS+S KNTK +LIKN+ D+A+GAI WW  G+G A+GKD GGF+GT  FA   ++   T   D   +  A+W FQWAFAA+A T+VSGA+AER    AYV  S L+T  IYP+V HWAWS+GGWAS    +D                LL GCG TDFAG+GVVHMTGG
Sbjct:   15 VDSLWVLLGASMVFFMQAGFAMLEAGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGKDSGGFLGTTGFALKDESMFGTTSGDFVSLSYANWIFQWAFAASATTIVSGAMAERATFGAYVLHSFLITSFIYPIVAHWAWSDGGWASARLADDDD--------------LLFGCGVTDFAGSGVVHMTGG 193
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: D7G265_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G265_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 5.260e-59
Identity = 102/193 (52.85%), Postives = 127/193 (65.80%), Query Frame = 2 
Query:   89 LDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATY---QDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            +DTAW++    +VF MQ GF+MLEVGS+S KNTK +LIKN+ D+A+GAI WW  G+G A+G+D GGF+G   FA  G+  Y     D   +  A+W FQW FAA+A T+VSGA+AER    AYV  S L+T  IYP+V HWAWS+GGWAS    +D                LL GCG TDFAG+GVVHMTGG
Sbjct:   15 VDTAWVLLGAAMVFFMQAGFAMLEVGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGRDSGGFVGVTGFALKGEDLYGTSTGDFDALSYANWLFQWTFAASATTIVSGAMAERATFGAYVLHSFLLTSFIYPIVAHWAWSDGGWASARLADDDD--------------LLFGCGVTDFAGSGVVHMTGG 193
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: D7G243_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G243_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 7.400e-59
Identity = 109/196 (55.61%), Postives = 128/196 (65.31%), Query Frame = 2 
Query:   80 AQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDG---RGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            A D+D  W+++  ILVF MQ GF+MLEVGS+S KNTK +LIKN+ DA+LGAICWW  G+G A G   G FIG+++FA  G     DDG    G   A W FQWAFAATAAT+VSGAVAER+   AY+  SV++T  IYPVVVHW W  GGWAS    ED                LL  CG  DFAG+GVVHMTGG
Sbjct:   30 AGDMDIFWLLFGAILVFFMQTGFAMLEVGSVSIKNTKNILIKNIGDASLGAICWWLFGYGVALGDTKGRFIGSNAFALKGSHFEADDGTLTNGYSYAMWLFQWAFAATAATIVSGAVAERVSFNAYIIYSVILTSFIYPVVVHWGWG-GGWASAWVDED----------------LLFDCGVIDFAGSGVVHMTGG 208
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: A0A6H5J7X8_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.390e-56
Identity = 100/196 (51.02%), Postives = 126/196 (64.29%), Query Frame = 2 
Query:   80 AQDLDTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKA---TYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            A  +D+ W++    +VF MQ GF+MLE GS+S KNTK +LIKN+ D+A+GAI WW  G+G A+GKD GGF+GT  FA   ++   T   D   +  A W FQWAFAA+A T+VSGA+AER    AYV  S L+T  IYP+V HWAWS+GGWAS    +D                LL GCGA + AG+GVVHMTGG
Sbjct:   12 AMAVDSLWVLLGAAMVFFMQAGFAMLEAGSVSIKNTKNILIKNIGDSAMGAIGWWLFGNGLAFGKDSGGFLGTTGFALKDESMFGTTSGDFVPLSYAKWIFQWAFAASATTIVSGAMAERATFGAYVLHSFLITSFIYPIVAHWAWSDGGWASARLADDDD--------------LLFGCGAIELAGSGVVHMTGG 193
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: D7G3S7_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3S7_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 6.290e-50
Identity = 104/222 (46.85%), Postives = 131/222 (59.01%), Query Frame = 2 
Query:   20 AAELEDRLEYLESRADGFASAQDL--DTAWIIWCGILVFLMQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDV------GGFIGTDSFAFS-GKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            A E+ D LE   +  +   S Q++  +T W+++  +LVF MQ GF+MLEVG++  KN K +LIKN+ DA+LG I W+T G+G A G D        GFIGTD F  + G      D  G+  A W FQWAFAAT AT+VSGAV ER+   AYV  ++ +   IYPVVVHW WS GGWAS  R                   LL+ CG  DFAG+GVVHMTGG
Sbjct:    2 ACEITD-LETFAACMEDKVSVQEISVNTFWLMFGAVLVFFMQTGFAMLEVGAVQAKNAKNILIKNVFDASLGGIMWYTTGYGIALGSDSYETSGNNGFIGTDGFLLTTGAFRGSGDDVGINWAGWLFQWAFAATTATIVSGAVVERVTFGAYVVYAMCLLGFIYPVVVHWGWSAGGWASAWR----------------ETELLMDCGVLDFAGSGVVHMTGG 206
[Close]
BLAST of Ec-28_000460.1 vs. uniprot
Match: D7G1Q4_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Q4_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.030e-49
Identity = 92/176 (52.27%), Postives = 116/176 (65.91%), Query Frame = 2 
Query:  134 MQVGFSMLEVGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFAFSGKATYQDDGR-GVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLSVLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGCGATDFAGAGVVHMTGG 658
            MQ GF+ LEVGSI PKNTKAVL+KN TDAA+GA+ WW +GHG A+G+    FIG   FAFS +   +  G   +E A W  QWAFAAT+ T+VSGA+AER+ + AY+   V++T LIYPVV HW W+  GWAS  R +                 LL+GCG  DF+G+GVVH+TGG
Sbjct:    1 MQFGFAALEVGSIRPKNTKAVLLKNTTDAAIGALVWWLVGHGVAFGEGSN-FIGETQFAFSPELDEERIGEVALEYARWMLQWAFAATSTTIVSGAIAERVALHAYLIYGVIITSLIYPVVAHWVWARSGWASSFRADGD---------------LLVGCGVADFSGSGVVHLTGG 160
The following BLAST results are available for this feature:
BLAST of Ec-28_000460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ1_ECTSI3.000e-155100.00Ammonium transporter (ISS) n=1 Tax=Ectocarpus sili... [more]
A0A6H5L6H3_9PHAE1.290e-13792.13Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A6H5JVJ2_9PHAE2.960e-6556.13Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FR22_ECTSI5.480e-6156.12Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]
D7G888_ECTSI1.240e-6052.33Ammonium transporter (Partial) (Fragment) n=1 Tax=... [more]
D7G265_ECTSI5.260e-5952.85Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
D7G243_ECTSI7.400e-5955.61Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A6H5J7X8_9PHAE6.390e-5651.02Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7G3S7_ECTSI6.290e-5046.85Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
D7G1Q4_ECTSI1.030e-4952.27Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:478322..483472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.1
Seed ortholog evalue1.2e-120
Seed eggNOG ortholog2880.D7FIJ1
Preferred nameamt-1
Length665
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal anchor
Gene idEc-28_000460.1
EggNOG free text desc.ammonium transmembrane transporter activity
EggNOG OGsCOG0004@1,KOG0682@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000460Ec-28_000460Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 478322..483472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000460.1Ec-28_000460.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 478333..483472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000460.1.1Ec-28_000460.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 478322..478453 +
Ec-28_000460.1.2Ec-28_000460.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 479269..479327 +
Ec-28_000460.1.3Ec-28_000460.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 481585..481622 +
Ec-28_000460.1.4Ec-28_000460.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 482275..482435 +
Ec-28_000460.1.5Ec-28_000460.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 482813..482913 +
Ec-28_000460.1.6Ec-28_000460.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 483299..483472 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0004605UTR:Ec-28_000460.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 478322..478332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000460.1CDS:Ec-28_000460.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 478333..478453 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000460.1 ID=Ec-28_000460.1|Name=Ec-28_000460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=218bp
MSTAAELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLE
VGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFA
FSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLS
VLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGC
GATDFAGAGVVHMTGGA*
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spliced messenger RNA

>Ec-28_000460.1 ID=Ec-28_000460.1|Name=Ec-28_000460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=665bp|location=Sequence derived from alignment at chr_28:478322..483472+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCCGCCTCAACATGTCGACTGCCGCTGAACTCGAGGACCGTCTCGAGTAT
CTGGAAAGCCGCGCGGACGGGTTTGCGAGTGCCCAGGACTTGGACACAGC
CTGGATCATCTGGTGTGGCATTCTCGTGTTCTTGATGCAAGTGGGATTCA
GCATGCTGGAGGTGGGCTCCATCTCTCCCAAGAACACCAAGGCCGTCCTG
ATCAAGAACCTGACAGATGCTGCATTGGGTGCAATTTGCTGGTGGACCCT
GGGGCATGGGTTTGCCTACGGCAAGGACGTTGGGGGCTTCATCGGCACAG
ACAGTTTCGCTTTCAGCGGCAAGGCCACGTATCAAGACGATGGCCGGGGA
GTAGAAATCGCGCATTGGTTTTTCCAGTGGGCTTTTGCCGCGACGGCGGC
AACCGTGGTGTCGGGGGCGGTTGCAGAACGGATAAAAATCGCCGCCTACG
TCCAGCTCTCCGTCCTGGTCACCTTCTTGATATACCCTGTGGTCGTGCAC
TGGGCTTGGAGCGAAGGAGGCTGGGCGAGCCCTCACCGCTGCGAAGACAC
CACGACCGCAGCTGACTACCAGCTGTGCAGGGAGGAGTCTCGAGCGCTAC
TGCTGGGTTGCGGGGCTACAGACTTTGCCGGGGCCGGGGTTGTTCACATG
ACGGGAGGTGCGTGA
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protein sequence of Ec-28_000460.1

>Ec-28_000460.1 ID=Ec-28_000460.1|Name=Ec-28_000460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=218bp
MSTAAELEDRLEYLESRADGFASAQDLDTAWIIWCGILVFLMQVGFSMLE
VGSISPKNTKAVLIKNLTDAALGAICWWTLGHGFAYGKDVGGFIGTDSFA
FSGKATYQDDGRGVEIAHWFFQWAFAATAATVVSGAVAERIKIAAYVQLS
VLVTFLIYPVVVHWAWSEGGWASPHRCEDTTTAADYQLCREESRALLLGC
GATDFAGAGVVHMTGGA*
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mRNA from alignment at chr_28:478322..483472+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000460.1 ID=Ec-28_000460.1|Name=Ec-28_000460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5151bp|location=Sequence derived from alignment at chr_28:478322..483472+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCCGCCTCAACATGTCGACTGCCGCTGAACTCGAGGACCGTCTCGAGTAT
CTGGAAAGCCGCGCGGACGGGTTTGCGAGTGCCCAGGACTTGGACACAGC
CTGGATCATCTGGTGTGGCATTCTCGTGTTCTGTGAGTGGCAAAACGTGT
AATGCAAATGTCTTTTCTCTTGAGAAAAGTGACAAAATGTGACAGGTTGT
TTGTAAGGCGCTCCAAAGGTGTGCTGGAAGAGAGCCTGCAGTGAGGAAAG
ACGAGAACATGAGATGAATGTCTCTTGGTAGAGACACGGCACTGCGCCAG
TGGCTTCACACCGTTTTCTTTGTTCGTCATCCTCGTCACCTTCATGTCTC
CCAACCTCTTTAGACCCGTGTTCGTGCTGCCAGTCCGGAAGCAGTGTAGT
CTAATCCAACAACCCAACAAACCAAACCAAACCAAGAGAACGGCAGCTGG
TGTGTTGAGCCTGTGTACTTTGCACACATACGTATGCATACATTGCCTTC
TGCTGTAGCTCTGGGTTTCGGCGGAAGGGCGGTGGTCCATTGTGGCGACG
TGCTTATTGTCATGTCTGGTTTGCGGAAAAGTTTGTTCCTTTTGTTTACT
GCCTCACCTATTAAAAACTGCTGCGGCGGACTATGTGATGAGTGCGATGT
GTTGTCCGAACTCGAAACTTAAACTTTCGTCTAAGACGGAATGCAGTACA
TGCGCCGTGTAGTCCGGCGGTAGACTGCTGTTTAGTGCTGCCTATAACTC
GGCGGTGAGACTAGGACGCCACACACCACTTGCAGACGGCGTGCTGTGCA
TTGCTAGCCTTCCTATTGCTTCCGTCAAGGCGCTGACTGCTCTGCATGTG
GCAACCACCTCCCCATGCAACCGCGTGCTTGCAAATTGGATAACCTGCTG
TCGAATGATGCGTTGGCGCTTCGGCGACGCCGTAACTGATGCCTCAGTGA
TGCAAGTGGGATTCAGCATGCTGGAGGTGGGCTCCATCTCTCCCAAGAAC
ACCAAGGTTAGTGTTGAAACATGTAACGCGGCAGCACCGAGAGCGGCGGC
AGCTGTTCCGGTAGGAATGCTGCTGCGAGTCGCTTCATGCTTCTTTTTCT
TGCAGAAGAACCACAAACTCAACCAGAACACGAGACCTTGGGAAACGGCA
GTCAGTAGGCTTTGCGGAGACATGCTGGACAAAAATGGGTTGTTATATTG
TGGCGACGCCGTGCCGAAGGTCTATGAGGAAAAATAGATACAAACACAGA
AAGACTACTGCTGTAGGTCTATGTTGAGTGTTAAGTTTTTCCCTTGGGCG
TGTGTTTCAGCCCATTGAAGTTGGACGAGGCGTATATACGCCGGAGCTGG
CGAGATTCTCACGCTCCAGTAGTTCGGTACAGCGACCTAGGCCTACCCAC
TGCACAACAACCTAGCTTGGGGTGTGCGTGTGCGTAAGGGTTAGGGTTAG
GGTTGAGCGGCGGGTTAGGCCTAGTGAGGCCTAGCTCCGTGGTGTAGCGT
GAGGGCTGGAAACCCGCTGTGGGTTTGGTTTCGTGTCTGCCTCCAATCAC
AACCCAGAAATTGTTGAACTGGCGAGTGCAAGAACCTCGCCAGCTTTGGC
GAATATGTGATACGCCTGTCGATTGAAGTTGACACTCTTTTGGCTGTTCG
CCGTGATGACGTAGACTTAATTACCCGCATTGCTGTGGAGGTCGGGATGT
GGAGACTTCAGGAAGCACAGATACACCGACCTATGAAGGAAGGGTACGGA
TCTGAGGGATCCGTGATGTTGCATCATGCCCAAGGGTTTGGTACTTTCCT
GATTCCCAAAGAGATGCGAATGTTTGAAGAAACTTTGAGAGGCTGGGAAA
ATGAGTCCACGAAGCACGAAGGCTCGCCCACTCTCCGCACCACCCTACAG
CTGTGCAGCTTGAATGAGTTCGCTCGGTCACGCTTAGCATTCCTCGCCAC
ATCGCACCAAAGGAAATAGCCAGCCTCCGGTGGCAGGTCATAGCCACCAC
ACTCCGGACTCTCCGCTCACCCAGAGTTGAGGGCTCCAGGCGTTCGATAG
GATGATGTATCCGTGCATAGGCTCCACCCATTGTACTGCGCATATGGATA
ATATGTGTGATACCGTAATGGTTTCTTCCTTCTCGGTAATTACTGCTCGA
CCGCAAGTAGTTGGTTATTGTGGGATTTTGTTTGGTGGTCACCCCTACAT
ATCTGTCTGGAAGGACTGCGTGTTGGCGACCATGTAACTTAAATCACGCT
GGATACCCGACACCGGCATGCCCAGCGGACCGTCCGTAATGCTGACTGTT
TTGCATACGTATGGTCAACGAGAATTGGCCGGACGGTTCGTTTCACATTC
CGTACGCATGCACGAAATCTCCCAAAGGTAGACCTCTCACCTCAGCACCA
GCTAGCGTGCTCGCTCCCTGGTGGTCTAATCGCCACGAAACCTTGAAGGC
TGGACGCACCACATCTGTAGGCTTCTTTGACACGTGTTGTAATGGCTGTG
GGGTCTATGTGGGCCGAGAAATATTTGTCAATCTACTTTGAGCTAAAGCA
AGAATCTAGGTGGAGATTTAGCGCACGGATGAACCCTGTTTCCGTCTACA
GCCGCGGATTAATCTCCAAACAGATCCCACAGCTGTCACAATAGGAAGCC
TACAGGTGTGGTGCGTACAGCCTTCCAGGTTTCGTGGCGATCCGACCTTC
ACAGAGGGAGCACGCTGTGGTGATATGGTCTTCTCGCGGATTTCGTGTGC
TGAGGGTATGCCAAGCGCGAAAAATTCCGTCGGACCAGTTGTCAATTCTC
GTCGACGTAAGAGTCAGCAAGCGTGCGACAAAGCGGACGCGAACGAAGAT
GGTACCCCCGCCACCCTCAATACGACATGACGTATGTTCCTGCTGCTTCC
AGCAGAGCTTACACCACTTGATCGAAACGGATGGAAACTGGTGTTCTCCA
TGTCCGACCACGATCGTACCGCCCTATCCTGGCACATATCCGTTGCACGC
AACTTACCCCCTATCCACGGGGCACTGACCTCACATCAATCGGTGGTGTA
TTTTTTTAGGGTTAGGGTGTATAGGGTTCAACCCAGAGTGAAAACGAATT
ATTAAGTGCTTCGTCTTGCGGTGTCAATCGTTTCTTTCGGAAAGGTTAAG
TTCGCCTCTGATCCTGTGGGGTTGGGAAAGTCCTCCGTAGGGTGCACAAA
CGTCGAAGACTTGATCCAGAAACTCTCTAACGTGCTACTCTCTGTGTAAC
ATGTTTTGGCCAGGCCGTCCTGATCAAGAACCTGACAGATGCTGCATTGG
GGTGAGTAGGGCGCAACACGTGCAATGTTTGCGTGTCTCGGAAGAATTCA
GCACTTGGTTGTTTGCAGTTCTTAGCATTAGCTGGGTTTTGTTTTCGACC
TTTGGGCAGTCTGCCTCGCGAACGATTCCGAACCACATGTTCGGTCTTGC
AACAAGGTTGCAGCTTTCACCTTATTATCTGTTGTGGCGGAGTCGAGGTT
CGGATCTTGTCCAAGACTCTCACTTCCTCCGTAAGATTCGGACGAAAGTG
CATTTCGGGGGAAGTCTTTCACGAAATTTTGCGAATCTTGCGACGTACAT
CAAACCTAGGCCCTCCCAAAACAGGTAGGTGATGACAGCCGCAGCGTTTC
TCGAAGATAACGGGTGGTTCGGAGTCGTTCGCGAAGCAGACTACCCACGA
AAAAGACTATTTCGAAAATACATGTAGCTTTTCTTGTGAGAACCGGTGTT
ACTGCTCCATAGACTGAATTTGTTATGGTGAAGTTGTTTTTGCTGAAGGG
ATAAGTCTTGAGTACGGTGTGCGTGATGATATGGCCTACCAGCAGTCTAG
CCTATTGATTCGCCACGTGTTTGTTCGTCACAAGTAGTCGTCGCGTATCG
ATTCATCTGTCGGCACGCATCACCCTCCCACTGCTTTCAACTCCTCGCAA
CAGTGCAATTTGCTGGTGGACCCTGGGGCATGGGTTTGCCTACGGCAAGG
ACGTTGGGGGCTTCATCGGCACAGACAGTTTCGCTTTCAGCGGCAAGGCC
ACGTATCAAGACGATGGCCGGGGAGTAGAAATCGCGCATTGGTTTTTCCA
GTGGGCTTTTGCCGGTGCGTATCTCCTTTCTCCTTCACCACGGCGCGCAG
CGTATATTTAGTGTTGCTACAGGCGCAACAAATGTCATCCGGTAGCAACC
GCCCCCGCACCAGCTGCACAAACTATCGCACCACCTACGTTGTTGCAAGA
GGCCGCTACTCTCGCACGCCATTTGAAGTACGCCGCCCGTGCCATTGGGA
TCCTCCTTCTTCTCTTGTCGTTCTTCAGTGTTGTACCGCTGTTGGGTTCT
TGTTGTGCGCCGTGAACTACCGCAACGGTCGTGTAAACGCCACATGCGTC
GTGTTCCTCTTGACTCTATGTTGTTCCGTTGTCTGACACTGCTGTCATTG
TCAACACCACCTTCGTTCGTTGCTGCGTATCACATTTGCAGCGACGGCGG
CAACCGTGGTGTCGGGGGCGGTTGCAGAACGGATAAAAATCGCCGCCTAC
GTCCAGCTCTCCGTCCTGGTCACCTTCTTGATATACCCTGTGGTGAGAAC
GCGGGGTAGCAGATCTCTGTTTCAGTCTCCCTCCTCACTGGCCCGAATCT
ATCTGTGACTTGATTCATGTACCCTCACAGGGCCTGAAGGAGGTAAGGTG
TGTCAAGACGTGCCAATGCCGTACTGCTGTGGCCGTATACGTCAAGTGAC
TCGGGGGTGGCCGGCCGGGGGTGCGGTATTGCATTCCTGCCTGCACACAC
GGCTTTCGTTCACGGTTCGAGCGCGGAAACACAAATTTAATTCGCTCCCA
CACTGAAGAAAAATATCGCTCTACTTCTGTTGCATCGCCCAAGCAAAAGC
GTTCTTCACACGAGGTTTGGAGCTGCAAGTCATTATTCATTCCGTGAACG
TTTGTTGTCCACCTACAATCTTGTTAGGTCGTGCACTGGGCTTGGAGCGA
AGGAGGCTGGGCGAGCCCTCACCGCTGCGAAGACACCACGACCGCAGCTG
ACTACCAGCTGTGCAGGGAGGAGTCTCGAGCGCTACTGCTGGGTTGCGGG
GCTACAGACTTTGCCGGGGCCGGGGTTGTTCACATGACGGGAGGTGCGTG
A
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Coding sequence (CDS) from alignment at chr_28:478322..483472+

>Ec-28_000460.1 ID=Ec-28_000460.1|Name=Ec-28_000460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=654bp|location=Sequence derived from alignment at chr_28:478322..483472+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGACTGCCGCTGAACTCGAGGACCGTCTCGAGTATCTGGAAAGCCG
CGCGGACGGGTTTGCGAGTGCCCAGGACTTGGACACAGCCTGGATCATCT
GGTGTGGCATTCTCGTGTTCTTGATGCAAGTGGGATTCAGCATGCTGGAG
GTGGGCTCCATCTCTCCCAAGAACACCAAGGCCGTCCTGATCAAGAACCT
GACAGATGCTGCATTGGGTGCAATTTGCTGGTGGACCCTGGGGCATGGGT
TTGCCTACGGCAAGGACGTTGGGGGCTTCATCGGCACAGACAGTTTCGCT
TTCAGCGGCAAGGCCACGTATCAAGACGATGGCCGGGGAGTAGAAATCGC
GCATTGGTTTTTCCAGTGGGCTTTTGCCGCGACGGCGGCAACCGTGGTGT
CGGGGGCGGTTGCAGAACGGATAAAAATCGCCGCCTACGTCCAGCTCTCC
GTCCTGGTCACCTTCTTGATATACCCTGTGGTCGTGCACTGGGCTTGGAG
CGAAGGAGGCTGGGCGAGCCCTCACCGCTGCGAAGACACCACGACCGCAG
CTGACTACCAGCTGTGCAGGGAGGAGTCTCGAGCGCTACTGCTGGGTTGC
GGGGCTACAGACTTTGCCGGGGCCGGGGTTGTTCACATGACGGGAGGTGC
GTGA
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Synonyms
The feature 'Ec-28_000460.1' has the following synonyms
Synonym
Esi0120_0078
Esi_0120_0078