Ec-27_005130.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005130.1
Unique NameEc-27_005130.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length158
Homology
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BLAST of Ec-27_005130.1 vs. uniprot
Match: D8LB57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB57_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.850e-96
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MVAPYVAKGAVVVATLACGGSAFSIPPSSAASAAAGVAGARPSSRHVMAAEAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE 471
            MVAPYVAKGAVVVATLACGGSAFSIPPSSAASAAAGVAGARPSSRHVMAAEAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE
Sbjct:    1 MVAPYVAKGAVVVATLACGGSAFSIPPSSAASAAAGVAGARPSSRHVMAAEAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE 157
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BLAST of Ec-27_005130.1 vs. uniprot
Match: A0A836CLN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.300e-18
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  205 SRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXQTXAKTKAQGMIGAPR 462
            SR+DV   +  A+++++  F  AA AKDDP+  GTK DP+F  C+S CIY CTK K   +RSR EC+PE  +  A TKAQ M G P+
Sbjct:   41 SRRDVFAGI--ASSVAAVGFAGAAVAKDDPSKVGTKDDPKFQACISQCIYECTKPKGSMTRSRGECLPECKKNCATTKAQAMTGVPK 125
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BLAST of Ec-27_005130.1 vs. uniprot
Match: A0A7S3QJL1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJL1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.790e-15
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:  199 PTSRKDVLGAVFGAAAMSSFAFVSAADAKD-DPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXQTXAKTKAQGMIGAP 459
            P +R   L + F AA +   A V+++ AKD DPALKGTK DP +  CLS CI+ CTK K ++ +SR ECIPE     A +K Q MIG P
Sbjct:   27 PLNRVSFLKSSFAAAGLVLTADVNSSVAKDIDPALKGTKNDPAYQACLSQCIFECTKPKGDEQKSRSECIPECKTKCATSKQQLMIGTP 115
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BLAST of Ec-27_005130.1 vs. uniprot
Match: A0A7S2GTD3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GTD3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.490e-15
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:  193 ELPTSRKDVLGAVFGAAAMSSFAFVSAADAKD--DPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE 471
            E P+SRK  L +   +AA+  F   S A A    DPA+KGTKADP +  C+S C+Y CTK K ++ +SRQECIPE  +  A  K Q MIG P   E
Sbjct:   39 EQPSSRKAFLQS---SAALLPFVVASPAFAAKEVDPAVKGTKADPAYQNCVSQCLYDCTKPKGDEQKSRQECIPECKKQCATDKQQLMIGTPIKKE 131
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BLAST of Ec-27_005130.1 vs. uniprot
Match: A0A1Z5JPE7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPE7_FISSO)

HSP 1 Score: 73.6 bits (179), Expect = 4.900e-14
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:  196 LPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXQTXAKTKAQGMIGAPR 462
            L  +R   L  V GAAA ++ A  + A  + DPA+KGTK DP +  CLS C+Y CTK K  + +SRQEC+  XX   AKTKAQ M+G P+
Sbjct:   21 LSGTRAQFLQHVLGAAATATIALPAYAK-EVDPAIKGTKKDPNYEKCLSVCMYDCTKPKGSEQKSRQECLXXXXXKCAKTKAQLMLGTPK 109
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BLAST of Ec-27_005130.1 vs. uniprot
Match: A0A6U3ZBC6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZBC6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.330e-13
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  289 DPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE 471
            DP++KGTKADP +  C+S C+Y CTK K ++ +SRQECIPE  +  A  K Q MIG+P   E
Sbjct:   71 DPSVKGTKADPAYQACVSQCLYDCTKPKGDEQKSRQECIPECKKQCATDKKQLMIGSPIQKE 132
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BLAST of Ec-27_005130.1 vs. uniprot
Match: A0A7S2XYH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.100e-13
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:  238 AAAMSSFAFVSAADAKDDPALKGTKADPEFVTCLSDCIYFCTKSK-EQSRSRQECIPEXXQTXAKTKAQGMIGAPRTSE 471
            AA ++  A VSA   K++  L GTK DP F  CLS CIYFCTK K  ++R R EC+PE  +  A TK QG++G P ++E
Sbjct:  107 AALVAGAAPVSAKKVKEE--LIGTKDDPTFKNCLSQCIYFCTKPKGTETRERSECLPECKKQCATTKEQGLVGKPISAE 183
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BLAST of Ec-27_005130.1 vs. uniprot
Match: K0SIG8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIG8_THAOC)

HSP 1 Score: 73.2 bits (178), Expect = 7.980e-13
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  289 DPALKGTKADPEFVTCLSDCIYFCTKSKE-QSRSRQECIPEXXQTXAKTKAQGMIGAPR 462
            DPALKGTKADPE+ +CLS CIY CTK K  + ++R EC+PE     A TK Q + GAP+
Sbjct:   68 DPALKGTKADPEYQSCLSTCIYECTKPKGVEQKTRAECLPECKSKCATTKQQLLTGAPK 126
[Close]
BLAST of Ec-27_005130.1 vs. uniprot
Match: B8CG77_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG77_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 6.700e-7
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  241 AAMSSFAFVSA---ADAKD-DPALKGTKADPEFVTCLSDCIYFCTKSK 372
            AA +  AF+++   A AKD DPALKGTKADPEF  CLS C+Y CTK K
Sbjct:   48 AASTCLAFLASSPPAFAKDVDPALKGTKADPEFQACLSQCVYECTKPK 95
The following BLAST results are available for this feature:
BLAST of Ec-27_005130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LB57_ECTSI3.850e-96100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLN5_9STRA9.300e-1849.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3QJL1_9STRA2.790e-1549.44Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2GTD3_9STRA7.490e-1547.92Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Z5JPE7_FISSO4.900e-1448.89Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6U3ZBC6_9STRA3.330e-1353.23Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2XYH9_9STRA5.100e-1349.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0SIG8_THAOC7.980e-1357.63Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8CG77_THAPS6.700e-762.50Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:4650220..4652100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.7
Seed ortholog evalue1e-73
Seed eggNOG ortholog2880.D8LB57
Length474
Hectar predicted targeting categorychloroplast
Gene idEc-27_005130.1
EggNOG OGs2E95B@1,2SFIZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005130Ec-27_005130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 4650220..4652100 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005130.1.1Ec-27_005130.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4650220..4650244 +
Ec-27_005130.1.2Ec-27_005130.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4650717..4650976 +
Ec-27_005130.1.3Ec-27_005130.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4651366..4651425 +
Ec-27_005130.1.4Ec-27_005130.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4651972..4652100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005130.1CDS:Ec-27_005130.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 4650220..4650244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005130.1Ec-27_005130.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 4650220..4652100 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005130.1 ID=Ec-27_005130.1|Name=Ec-27_005130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=158bp
MVAPYVAKGAVVVATLACGGSAFSIPPSSAASAAAGVAGARPSSRHVMAA
EAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPAL
KGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPECRQTCAKTKAQGMI
GAPRTSE*
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spliced messenger RNA

>Ec-27_005130.1 ID=Ec-27_005130.1|Name=Ec-27_005130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=474bp|location=Sequence derived from alignment at chr_27:4650220..4652100+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCCCCTACGTTGCTAAAGGTGCGGTGGTGGTAGCGACTCTCGC
CTGCGGAGGATCCGCGTTTTCCATACCGCCTTCTTCTGCAGCATCAGCAG
CAGCAGGCGTCGCCGGGGCACGACCATCATCGCGACATGTGATGGCAGCA
GAGGCAGCACCAGGTCCCGGGAGCAGCGACTACTCGGCAGCAGAGTTGCC
GACGTCGCGAAAGGATGTGCTGGGAGCGGTGTTCGGGGCCGCGGCGATGT
CTTCCTTCGCCTTCGTTTCTGCCGCGGACGCTAAGGACGACCCGGCGCTC
AAGGGCACCAAGGCAGACCCCGAGTTCGTAACCTGCCTCAGCGATTGCAT
CTATTTCTGCACCAAGTCGAAGGAGCAGTCGCGCTCAAGGCAAGAGTGCA
TCCCCGAGTGCCGCCAGACCTGTGCAAAGACGAAGGCGCAGGGCATGATC
GGTGCGCCCCGCACATCGGAATAG
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protein sequence of Ec-27_005130.1

>Ec-27_005130.1 ID=Ec-27_005130.1|Name=Ec-27_005130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=158bp
MVAPYVAKGAVVVATLACGGSAFSIPPSSAASAAAGVAGARPSSRHVMAA
EAAPGPGSSDYSAAELPTSRKDVLGAVFGAAAMSSFAFVSAADAKDDPAL
KGTKADPEFVTCLSDCIYFCTKSKEQSRSRQECIPECRQTCAKTKAQGMI
GAPRTSE*
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mRNA from alignment at chr_27:4650220..4652100+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005130.1 ID=Ec-27_005130.1|Name=Ec-27_005130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1881bp|location=Sequence derived from alignment at chr_27:4650220..4652100+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGGCCCCCTACGTTGCTAAAGGCGAGTGCACTTTTTTACGCCGCCA
GCTGTTTATTCGATGCGGTGCAACCAATCCCCTCAGTCAAGGATTTCGGG
ATCGATGATCGATGACGATCGCTTCCCTCAAGGCACCACCACGTGCTCTC
TTGATATATAGGGGGTGAGGTTGCACTTGTGCACAGCAGTGCGTCTCAGA
ATCACGCAACCGTGCCTGAAGGTCATCCTGCACCCGCAGGTGCCTCTGCA
ATCGTAGCGCACACATACAGTTTCTCCCTCCTGACAAATGCAACTTCGCT
TAGGGGGTGTATTATGCGAACCGCTCCCATATGGGCAAGTACTTGTGTTG
TTGCATGCAATTGGTGAGTGTTTCGAAGGCTCGCCGCATCATCAGAATCC
GCGCCCTCGAGAGCGGGACACAGAAACAGAGACCCGAGATGAGAGCTTCG
GCAATATCAGATATTTAGACAAGTTGTTGCACCCACCTCGCCGACAGGTG
CGGTGGTGGTAGCGACTCTCGCCTGCGGAGGATCCGCGTTTTCCATACCG
CCTTCTTCTGCAGCATCAGCAGCAGCAGGCGTCGCCGGGGCACGACCATC
ATCGCGACATGTGATGGCAGCAGAGGCAGCACCAGGTCCCGGGAGCAGCG
ACTACTCGGCAGCAGAGTTGCCGACGTCGCGAAAGGATGTGCTGGGAGCG
GTGTTCGGGGCCGCGGCGATGTCTTCCTTCGCCTTCGTTTCTGCCGCGGA
CGCTAAGGTCTGTGCTGAATGCCACCACACCGCCGTTGCAGTAGAGCAGT
CCGTGTTGAGACTTAGGTGTGCAGTAAAATTCAGCAGGTCCCGAAGCAAG
AGCGCTGCGGCACAGGGGGTTTCTGCTGGCCTCTTGTCGTACACCTCTTG
TCGTACACCCTAAGTTCTCCAAACCTCTGCAGTTCTGTATTCATCTGAAT
TGACTCAATTTGCCGGGTACGCGTGAACACCAAGATGGATGCACATCCAC
CGGCGGACGGTGAAACGTTGCCGTGGCTTAGCGACGATGCAACGCGCGCC
AACGTTACGCTTTTTTCGGCCGCCTGTTTTCTCGACCGACCCCGTCGCGT
TTGACGTACGCATTCCTTCGCGTCCTACTCACGTCCTTACCCGCAGGACG
ACCCGGCGCTCAAGGGCACCAAGGCAGACCCCGAGTTCGTAACCTGCCTC
AGCGATGTGAGTTGTGGTGTTGACGTTGCCTGCAGGCAAGACGACCATGT
CCTCCCTTTTGTCCGTCGGTTTACCGTGTGGGTGTTCTATTTCATCGGAA
CGTCCGTGTGTGCACCGATCGGTCGGTTCGAGAGATGAACCCGCACCCAA
CAGCAGCAGCAGGACCTTTCTCGTTCGTGTGCGATCTTGCTCTCCCTACC
CCTTCCACCCTCGCGATGAGGAGACTATTTCACGTGCTTTGGTCGGCGGT
TCTAGAGTTTCTGCGAAGCCCGCTGCCATCACAGGGCGTACCAAACCTTG
ACCCCCCCCCCGACCTCGGATCGTTTTGCAACTTGTTGGCGCCACACTTG
TTGTCGAGAGCGGTCGCGTGCACCTTCGAACTGGCTGTTGTAGCCCAACC
CGTCCTGTTTTTTAAATAATACCACGTGCATGCCTGCTGTGTCTTCTGGC
ACCGCCTCCTGTGGTATAGTCGAACCCGACCCCCCGCCCGCCATTAAACG
TCCTCGCACACACGCCCCTGCCCCCCCCCCGACACCCACGGATGATACGC
AGTGCATCTATTTCTGCACCAAGTCGAAGGAGCAGTCGCGCTCAAGGCAA
GAGTGCATCCCCGAGTGCCGCCAGACCTGTGCAAAGACGAAGGCGCAGGG
CATGATCGGTGCGCCCCGCACATCGGAATAG
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Coding sequence (CDS) from alignment at chr_27:4650220..4652100+

>Ec-27_005130.1 ID=Ec-27_005130.1|Name=Ec-27_005130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=474bp|location=Sequence derived from alignment at chr_27:4650220..4652100+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGGCCCCCTACGTTGCTAAAGGTGCGGTGGTGGTAGCGACTCTCGC
CTGCGGAGGATCCGCGTTTTCCATACCGCCTTCTTCTGCAGCATCAGCAG
CAGCAGGCGTCGCCGGGGCACGACCATCATCGCGACATGTGATGGCAGCA
GAGGCAGCACCAGGTCCCGGGAGCAGCGACTACTCGGCAGCAGAGTTGCC
GACGTCGCGAAAGGATGTGCTGGGAGCGGTGTTCGGGGCCGCGGCGATGT
CTTCCTTCGCCTTCGTTTCTGCCGCGGACGCTAAGGACGACCCGGCGCTC
AAGGGCACCAAGGCAGACCCCGAGTTCGTAACCTGCCTCAGCGATTGCAT
CTATTTCTGCACCAAGTCGAAGGAGCAGTCGCGCTCAAGGCAAGAGTGCA
TCCCCGAGTGCCGCCAGACCTGTGCAAAGACGAAGGCGCAGGGCATGATC
GGTGCGCCCCGCACATCGGAATAG
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Synonyms
The feature 'Ec-27_005130.1' has the following synonyms
Synonym
Esi0000_0253
Esi_0000_0253