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Homology
BLAST of Ec-27_003580.3 vs. uniprot
Match: D8LBK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK8_ECTSI) HSP 1 Score: 353 bits (907), Expect = 3.240e-112 Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 3
Query: 477 KFIALVSDFAAEGMGSEDXXXXXXXXXXIDGDGASVDAARSFTYGSRLDDGAGSFDDMMSGSREAVGERRLLRSHNRRCPRSDRSXXXXXXXXXXXXXXXXXXAAGAAPDDALAGRGAAVVACSSRNLSDGAKDGAAGVRTEQQRRPDGSGRAGDGDTPGGSGSKARIHSDSRRGSKEAVSCCDDAYRGDDGTESQRAGGSARIEAGVGPGMQELSMRAEAKC 1145
FIALVSDFAAEGMGSEDXXXXXXXXXXIDGDGASVDAARSFTYGSRLDDGAGSFDDMMSGSREAVGERRLLRSHNRRCPRSDRSXXXXXXXXXXXXXXXXXXAAGAAPDDALAGRGAAVVACSSRNLSDGAKDGAAGVRTEQQRRPDGSGRAGDGDTPGGSGSKARIHSDSRRGSKEAVSCCDDAYRGDDGTESQRAGGSARIEAGVGPGMQELSMRAEAKC
Sbjct: 158 SFIALVSDFAAEGMGSEDXXXXXXXXXXIDGDGASVDAARSFTYGSRLDDGAGSFDDMMSGSREAVGERRLLRSHNRRCPRSDRSXXXXXXXXXXXXXXXXXXAAGAAPDDALAGRGAAVVACSSRNLSDGAKDGAAGVRTEQQRRPDGSGRAGDGDTPGGSGSKARIHSDSRRGSKEAVSCCDDAYRGDDGTESQRAGGSARIEAGVGPGMQELSMRAEAKC 380
BLAST of Ec-27_003580.3 vs. uniprot
Match: A0A6H5K5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J6_9PHAE) HSP 1 Score: 280 bits (716), Expect = 2.360e-84 Identity = 173/222 (77.93%), Postives = 180/222 (81.08%), Query Frame = 3
Query: 480 FIALVSDFAAEGMGSEDXXXXXXXXXXIDGDGASVDAARSFTYGSRLDDGAGSFDDMMSGSREAVGERRLLRSHNRRCPRSDRSXXXXXXXXXXXXXXXXXXAAGAAPDDALAGRGAAVVACSSRNLSDGAKDGAAGVRTEQQRRPDGSGRAGDGDTPGGSGSKARIHSDSRRGSKEAVSCCDDAYRGDDGTESQRAGGSARIEAGVGPGMQELSMRAEAKC 1145
FIALVSDFA EGMG+ED XXXXXXXXX DGDGAS+D ARSFTYGSRLDDGAGSF+DM SGS + +GERRLLRSHNRRCPRSDRS AAGAAPDD LAG GAAVVACS RNLS GA+DGAAGVRTEQ R GSGRA DGD PGG GSK RIHSDS RGSKEAVSCCDDAYRG DG ESQRAGGSARIE GVG G+QELSMRAEAKC
Sbjct: 132 FIALVSDFADEGMGAEDEXXXXXXXXXFDGDGASMDTARSFTYGSRLDDGAGSFEDM-SGSLQVLGERRLLRSHNRRCPRSDRSSSSSGNSSGRIRRSPSPPAAGAAPDDMLAGHGAAVVACS-RNLSHGAQDGAAGVRTEQ-RMSGGSGRADDGDIPGGFGSKGRIHSDSSRGSKEAVSCCDDAYRGGDGAESQRAGGSARIEEGVGSGIQELSMRAEAKC 350
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Length | 2210 |
| Hectar predicted targeting category | other localisation |
| Gene id | Ec-27_003580.3 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-27_003580.3 ID=Ec-27_003580.3|Name=Ec-27_003580.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=100bp MRVLFTPVDKKKFHGKDGSRAGFSARHHTQYIYSSSAWGADLAGAKAPFV PCGTSLGLSAATRRLRYRSCNDTSQDTYSTSHNRREITHHHHHHPQHTR* back to topspliced messenger RNA >Ec-27_003580.3 ID=Ec-27_003580.3|Name=Ec-27_003580.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2210bp|location=Sequence derived from alignment at chr_27:3114650..3119139+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
TCTCTGTCTGATGGCAGAACCCAAGGATGATCCAGACGCGGCCCATTTCA TGGACAAGATTGCAAACCATCTTGGGAACAGCTGCTTGGAAGAGAACCTC AACGATTTCCTAGAGCAGCACTCCGAGGAGCTGGTGCTCGAACTCCGCCG AGTTGACTCTTCGCGGTCGCCGGTAGAACAAGAAGGGCTGGAGCATGAGG CCAAGCGAGAGGAGCTGGGGGGAGAGAAGCAAGAGGAGGCCAGCATGGCG AGGGGAGAGGGTGCGGAGGGGTACCAAGACGGAGACGGCCACTTCAGCCA ACGGGTCCACGAGCTGTACCAGGAGTTCCTGAAGATCTTGCAGTCGAATC TCGAAGAGTTTTTGCAAGCGGAAGGGTTGACGGAGACCCAGCTCAGGGAC GCGTGCGAGAAGGAAATGCGGGCGAAGGGTGGCAGGGGGGACTGTTTCAT GCACACCCTCATCTCTTCGTGGGAATTCTCAAGTTTCATCGCGCTTGTTT CGGACTTCGCGGCCGAAGGGATGGGGTCGGAGGACGAAGAGGAGGAGGAG GACGGGGAGGACGATATTGACGGCGACGGGGCGTCGGTGGATGCCGCCCG GTCGTTCACTTACGGTTCCCGTCTTGACGATGGAGCTGGAAGCTTCGACG ACATGATGAGTGGTAGTCGTGAAGCAGTAGGGGAGCGCCGTCTCCTCCGA AGCCATAACCGCCGGTGTCCTCGCAGCGACAGGAGCAGTAGCAGCAGTGG AAACAGCAGCGGCCGTAGTCGAAGATCGCCCTCTCCGCCCGCGGCAGGTG CTGCTCCAGACGACGCGCTTGCCGGGCGCGGAGCGGCAGTCGTCGCCTGT AGTAGTAGGAATCTAAGTGATGGTGCGAAAGACGGGGCTGCTGGCGTGCG GACGGAGCAGCAGCGGCGGCCGGATGGTAGTGGTCGTGCGGGTGATGGTG ATACTCCCGGCGGTTCAGGCAGCAAGGCTAGAATACACAGCGACAGCAGG AGGGGTAGCAAAGAGGCCGTCAGCTGTTGCGACGATGCATACCGTGGCGA CGATGGCACCGAGTCGCAAAGAGCAGGAGGTTCCGCCAGGATAGAAGCGG GAGTAGGCCCGGGCATGCAGGAGCTGTCTATGAGGGCGGAAGCCAAGTGC TAGTATCGTTGTCGTTCGGAAAACGAAACAGGTGCAAGCTCTTGCCGCGT GGTGGTTTCGGAAGCTGCCTGCGGAGGGAGAGAGGGGCATCGCATTCCAC CTTCCCACACCGAAGGAGGATTCCGCCGTCGCTCGACTTGGCTCCAACCC CGCGACACCGCTGACTGCTGCGAAAGGCACGCGGTTGCCAACCTTCGAGA CACTATACGCCGTGCTCCTTCCCCGCAGACTGCTGTTCCAACCCTATTAT AGCGAGTGCGGAAGTTTTCGTGCTGCTTCCAGGCTGTTCCATGGTAACCT TCTTTTTCAAGTGTACTGGCGTTTTCGGCGGAAAGCGCACAAATGCATTA AAAATTGGTCTAATTGGGGACAAAACTGCGCGCGAAAGTGCGAAACCCCG TCAACCACAAACCTCCGCTGTATTTACTTCCAACAATTAAGATTACACGA ATGGCATGCGCGTGCTTTTTACACCTGTCGACAAAAAAAAATTCCACGGC AAAGACGGCTCGAGAGCTGGCTTCAGCGCAAGGCACCATACACAGTATAT ATACTCTTCTTCGGCGTGGGGGGCTGATTTAGCTGGCGCCAAAGCGCCCT TCGTTCCCTGCGGTACGTCACTCGGCTTGTCTGCTGCGACACGAAGACTT AGATACAGATCGTGCAATGATACATCACAGGACACTTATTCTACCAGCCA TAACCGGAGAGAGATTACACACCACCACCACCACCACCCCCAACACACAC GTTAACACAAGCCCGACACTTCTTCAATGAAACGGACAGGGACGGCAACA CGGTCCCCCCACCAAGCCCACCCCAATCCGTTGCTCCTCGAAATTTTGAC ATCCCCGGCAGCCGTCCCTCCCCGTGCAACGCACCAGAACAAACGCTGCT GCACGCTCATGAGCCAAAATCCGCCTTGGCGAGCCCGTCGCGCCCCACCC CGCGCGCGCTTAAGCTGGGAAGACTCCACGAACGCGAGCGCGATTCTTCT GGCGTCTTATAACACCATTATCGGGCGTGGCGTCGTCGCTGTCGTCGTCG TCGTCGTTCC back to topprotein sequence of Ec-27_003580.3 >Ec-27_003580.3 ID=Ec-27_003580.3|Name=Ec-27_003580.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=100bp
MRVLFTPVDKKKFHGKDGSRAGFSARHHTQYIYSSSAWGADLAGAKAPFV PCGTSLGLSAATRRLRYRSCNDTSQDTYSTSHNRREITHHHHHHPQHTR* back to topmRNA from alignment at chr_27:3114650..3119139+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-27_003580.3 ID=Ec-27_003580.3|Name=Ec-27_003580.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4490bp|location=Sequence derived from alignment at chr_27:3114650..3119139+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) TCTCTGTCTGATGGCAGAACCCAAGGATGATCCAGACGCGGCCCATTTCA
TGGACAAGGTAAAGCTTTCGAAAAGTGTTAATTGACCATCAGAAACACAC
CTCGTGTCTTCCAGAAACATGAGAGCCAAAGCGACACACACGCCGTGTAA
TCTGAACTCTGTCTTTTTCGGTCCCGTGGCTGTTGCTTCTCTCATCTGCA
GATTGCAAACCATCTTGGGAACAGCTGCTTGGAAGAGGTGAGCCGCAAGT
GGTAAATCGTGACGGTCGGGCCTGCCTCGATCGCATGAGGTAGAGAGACA
TGCAGTTATACTGTAGTACGGGATGCTCGCAATCTCGCACGTGGAAATAC
GGCTGCACTGCAGCAGTTACATGTACTGTATCTGTCCGCAATCTGGATTT
ATTTGTGTAGACCTGTAGTGTAGACACACGAGACTCCATTACACCCCCGC
TTTGTCAAGTGAGCAAGACTACCACACATTATAACCACATCGACGCAATG
CATTCCGTATGTAATATGTACATGCATTCACGAGACTGTGTTGGTTGCGG
GTCCTCCGATTTTTCCAGCTATGCATATGTAGCTCGAGTCCTCCTCAAAC
CAAGTAGACTAGTAGTCTACCTTGAGAAAGTGCGATGGGAGACACTCCAC
GAGCACTGGTTTGTTGTGTACTTCTGTACTGCTGCTGTACCTGGTAGTCT
AACTCTACTGTAACAAGAAAAACTTCGACTAGGTGAGACAGAGACATGAA
ATCAGTACGGGCCGTGCCGTTACTCATTCCAAATGATAGAATCAGGACGA
GATCGACAAGGTTACTGTCGAGAGGGACGGGTGTCGTCCTCTACCAGCAA
TCATTAGGAAACATACAACCACAGAAAGACGACTCATTCGAGATAAGACC
GCAGTTGAACAGCAATGCAAAAACTTGACGCATGCTACATGCGGTACACG
AGATGCTGGGAAGGAGCGTGATGAGCGAAAGGTCATTTCGTCCTTTTCCA
TCTCTTGTAGACCAACCCGCCGGAGGACTACAGTAGTTATTGTCAAGATG
TGAGATATACTTATAAAGGTGTGAGTATAGCATATCTCCGGCAAGTATGC
GTCCATGGATGGACACGACAATCTGGAGGAGGCCCCCGAAGATATAACAC
TGTGCCTGCCATCTGGTTGCCTCTAGACTACATACATGGCTTCGGGTAGG
AAAGAATCGTACAACGAATTCACGAATTACGAGTTCGTTTTTCTTCTCAC
AAGATGAACTGTCGAACAAGGTTTGAAGTTGGCAGCATGAGCACTGTGCC
CTCTCGACCGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAAAACCCCCCCCCGCCCTCTATCGCTCTCTCTCGT
GTAATTCAACACCTCAGAACCTCAACGATTTCCTAGAGCAGCACTCCGAG
GAGCTGGTGCTCGAACTCCGCCGAGTTGACTCTTCGCGGTCGCCGGTAGA
ACAAGAAGGGCTGGAGCATGAGGCCAAGCGAGAGGAGCTGGGGGGAGAGA
AGCAAGAGGAGGCCAGCATGGCGAGGGGAGAGGGTGCGGAGGGGTACCAA
GACGGAGACGGCCACTTCAGCCAACGGGTCCACGAGCTGTACCAGGAGTT
CCTGAAGATCTTGCAGTCGAATCTCGAAGGTGACTTGCGGCGTGTGACAC
GTGCCCCGCGCCGCGCCGTTGGCAGTGTAGATAGCCAGCCGAAGCGAGAA
GCACGACGAGGGGCCGGCCGCCCGGTACTCGAGATCTAGCTGTGGTCGCC
TGCCAAACGGTGCTCGCCAGCCAAACTTTGCTAGTGCTTCGGGATTCCTT
CCGTCTGCAAGAAGGGAGGCGGATCACGTCTTTTGTGAGGGTCATTGTGA
GATGCATACGCAAACGGCTGCTGCTGCGTATGCACCAGCGAAAACATCGG
CAAGACGGGAAAATGCACCCACCCTTGGCGCGATCTCGCTATGTTGCTCC
AGAACAAGAAATATGTACAACGAGAAAAAGGTTTTCTGGCCATGCCTTCC
CATCCCACCGATCGGGGCTGCGTTTACGTATTTTCCACTCGAAAGGTTTC
TCCTTCTTCCTCATTTCTCCTCCTCTCCTCCTCCCTCTGCTTTTATTTTT
GTGCGTGCGTGTGTAGAGTTTTTGCAAGCGGAAGGGTTGACGGAGACCCA
GCTCAGGGACGCGTGCGAGAAGGAAATGCGGGCGAAGGGTGGCAGGGGGG
ACTGTTTCATGCACACCCTCATCTCTTCGTGGGAATTCTCAAGGCAAGCA
GGCGGGCTCATTATGCGGGTCTTGCCTTTTGAAGCCCTAGGTCAAGTATC
GAGGCATTGGACACATTACATCTCGATCATTCTACATGAGGCATGCACCC
TGCATGCTCACGTGGTGGTTCTCGCTTGGCGCATTATCACGTCGTACAGG
CGCACGAGCACCATTACGGAATACTGTTAATGTTCGGCAGCGCCGTCGTT
GAAAAGAAACGCGGCGTCAGTCTTGGCCGGGCCCTGTTCTTGCTGCAATG
CTTGCATCCTCGCACTTTTCTTCGCACCGATTATACCCCGCGTCCCTTTT
CCCTAACTCTGTCTCTGTCTCGTTCCGTTGGCTGCGGTGCTGATCTCGGT
TCTGTCGGCGCCCGCGCGATGCCCTTGTGCTCTCTCAAAACCTCGTGCTA
CGGCTGGCTGCAGTTTCATCGCGCTTGTTTCGGACTTCGCGGCCGAAGGG
ATGGGGTCGGAGGACGAAGAGGAGGAGGAGGACGGGGAGGACGATATTGA
CGGCGACGGGGCGTCGGTGGATGCCGCCCGGTCGTTCACTTACGGTTCCC
GTCTTGACGATGGAGCTGGAAGCTTCGACGACATGATGAGTGGTAGTCGT
GAAGCAGTAGGGGAGCGCCGTCTCCTCCGAAGCCATAACCGCCGGTGTCC
TCGCAGCGACAGGAGCAGTAGCAGCAGTGGAAACAGCAGCGGCCGTAGTC
GAAGATCGCCCTCTCCGCCCGCGGCAGGTGCTGCTCCAGACGACGCGCTT
GCCGGGCGCGGAGCGGCAGTCGTCGCCTGTAGTAGTAGGAATCTAAGTGA
TGGTGCGAAAGACGGGGCTGCTGGCGTGCGGACGGAGCAGCAGCGGCGGC
CGGATGGTAGTGGTCGTGCGGGTGATGGTGATACTCCCGGCGGTTCAGGC
AGCAAGGCTAGAATACACAGCGACAGCAGGAGGGGTAGCAAAGAGGCCGT
CAGCTGTTGCGACGATGCATACCGTGGCGACGATGGCACCGAGTCGCAAA
GAGCAGGAGGTTCCGCCAGGATAGAAGCGGGAGTAGGCCCGGGCATGCAG
GAGCTGTCTATGAGGGCGGAAGCCAAGTGCTAGTATCGTTGTCGTTCGGA
AAACGAAACAGGTGCAAGCTCTTGCCGCGTGGTGGTTTCGGAAGCTGCCT
GCGGAGGGAGAGAGGGGCATCGCATTCCACCTTCCCACACCGAAGGAGGA
TTCCGCCGTCGCTCGACTTGGCTCCAACCCCGCGACACCGCTGACTGCTG
CGAAAGGCACGCGGTTGCCAACCTTCGAGACACTATACGCCGTGCTCCTT
CCCCGCAGACTGCTGTTCCAACCCTATTATAGCGAGTGCGGAAGTTTTCG
TGCTGCTTCCAGGCTGTTCCATGGTAACCTTCTTTTTCAAGTGTACTGGC
GTTTTCGGCGGAAAGCGCACAAATGCATTAAAAATTGGTCTAATTGGGGA
CAAAACTGCGCGCGAAAGTGCGAAACCCCGTCAACCACAAACCTCCGCTG
TATTTACTTCCAACAATTAAGATTACACGAATGGCATGCGCGTGCTTTTT
ACACCTGTCGACAAAAAAAAATTCCACGGCAAAGACGGCTCGAGAGCTGG
CTTCAGCGCAAGGCACCATACACAGTATATATACTCTTCTTCGGCGTGGG
GGGCTGATTTAGCTGGCGCCAAAGCGCCCTTCGTTCCCTGCGGTACGTCA
CTCGGCTTGTCTGCTGCGACACGAAGACTTAGATACAGATCGTGCAATGA
TACATCACAGGACACTTATTCTACCAGCCATAACCGGAGAGAGATTACAC
ACCACCACCACCACCACCCCCAACACACACGTTAACACAAGCCCGACACT
TCTTCAATGAAACGGACAGGGACGGCAACACGGTCCCCCCACCAAGCCCA
CCCCAATCCGTTGCTCCTCGAAATTTTGACATCCCCGGCAGCCGTCCCTC
CCCGTGCAACGCACCAGAACAAACGCTGCTGCACGCTCATGAGCCAAAAT
CCGCCTTGGCGAGCCCGTCGCGCCCCACCCCGCGCGCGCTTAAGCTGGGA
AGACTCCACGAACGCGAGCGCGATTCTTCTGGCGTCTTATAACACCATTA
TCGGGCGTGGCGTCGTCGCTGTCGTCGTCGTCGTCGTTCC back to topCoding sequence (CDS) from alignment at chr_27:3114650..3119139+ >Ec-27_003580.3 ID=Ec-27_003580.3|Name=Ec-27_003580.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=300bp|location=Sequence derived from alignment at chr_27:3114650..3119139+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCGCGTGCTTTTTACACCTGTCGACAAAAAAAAATTCCACGGCAAAGA CGGCTCGAGAGCTGGCTTCAGCGCAAGGCACCATACACAGTATATATACT CTTCTTCGGCGTGGGGGGCTGATTTAGCTGGCGCCAAAGCGCCCTTCGTT CCCTGCGGTACGTCACTCGGCTTGTCTGCTGCGACACGAAGACTTAGATA CAGATCGTGCAATGATACATCACAGGACACTTATTCTACCAGCCATAACC GGAGAGAGATTACACACCACCACCACCACCACCCCCAACACACACGTTAA back to top
Synonyms
The feature 'Ec-27_003580.3' has the following synonyms
| Synonym |
| Esi0000_0520 |
| Esi_0000_0520 |
|