Ec-27_003280.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-27_003280.1
Unique Name	Ec-27_003280.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	827

Homology

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BLAST of Ec-27_003280.1 vs. uniprot
Match: D8LBN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN9_ECTSI)

HSP 1 Score: 1100 bits (2844), Expect = 0.000e+0
Identity = 764/826 (92.49%), Postives = 764/826 (92.49%), Query Frame = 1

Query:    1 MAMASPYTWGRDGGASSRESRTRLGRGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGYGNEPRSAGGYGDGSIGGDTVVDTFGAATVPEGRHGAAGSSGSEPSFEPPQAGAASVGQGWSTPGVDAVPAREEPAAEGGEDDDVGKAGSTTATVPADPQGGGVSGXXXXXXXXXXXXAWPGVDNADATEPSVSRAGGSEPVVGTEVFDSSSVGGVSFRSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGAEGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSERPRVVGDGGSGVSTLSPTTPXXXXXXXXSSEHQAMIDREVEHQLDDLFDSIILDDADDPDAEGGEYAVPSEAAVVGSGGVPGQGWGSLVNDHEEEAVDAVREQPAAGPTQAADQDRRTPSSHGDASVHAAADARARGGVSTPGGAPXXXXXXXXXXXXXXXXXPPVAAEATAIPEVGSSSGAGSAGSLWGNTRRWETLPPQPDAATSDPVXXXXXXXXXXXXXXXXXXXXXXXGEEDLEDESDVRVLLDPIELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAXXXXXXXXXXXXXXGGNQLSAYGGGGGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVASPRLFDGGSQSPINIYGNVHVHLQQGGAQDGGAQQXXXXXXXXXXGQPSPSSELSARERYYSQGETSWSGSERGGQ 2478
            MAMASPYTWGRDGGASSRESRTRLGRGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                              SGYGNEPRSAGGYGDGSIGGDTVVDTFGAATVPEGRHGAAGSSGSEPSFEPPQAGAASVGQGWSTPGVDAVPAREEPAAEGGEDDDVGKAGSTTATVPADPQGGGVSGXXXXXXXXXXXXAWPGVDNADATEPSVSRAGGSEPVVGTEVFDSSSVGGVSFRSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGAEGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSERPRVVGDGGSGVSTLSPTTPXXXXXXXXSSEHQAMIDREVEHQLDDLFDSIILDDADDPDAEGGEYAVPSEAAVVGSGGVPGQGWGSLVNDHEEEAVDAVREQPAAGPTQAADQDRRTPSSHGDASVHAAADARARGGVSTPGGAPXXXXXXXXXXXXXXXXXPPVAAEATAIPEVGSSSGAGSAGSLWGNTRRWETLPPQPDAATSDPVXXXXXXXXXXXXXXXXXXXXXXXGEEDLEDESDVRVLLDPIELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAXXXXXXXXXXXXXXGGNQLSAYGGGGGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVASPRLFDGGSQSPINIYGNVHVHLQQGGAQDGGAQQXXXXXXXXXXGQPSPSSELSARERYYSQGETSWSGSERGGQ
Sbjct:    1 MAMASPYTWGRDGGASSRESRTRLGRGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------SGYGNEPRSAGGYGDGSIGGDTVVDTFGAATVPEGRHGAAGSSGSEPSFEPPQAGAASVGQGWSTPGVDAVPAREEPAAEGGEDDDVGKAGSTTATVPADPQGGGVSGXXXXXXXXXXXXAWPGVDNADATEPSVSRAGGSEPVVGTEVFDSSSVGGVSFRSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGAEGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSERPRVVGDGGSGVSTLSPTTPXXXXXXXXSSEHQAMIDREVEHQLDDLFDSIILDDADDPDAEGGEYAVPSEAAVVGSGGVPGQGWGSLVNDHEEEAVDAVREQPAAGPTQAADQDRRTPSSHGDASVHAAADARARGGVSTPGGAPXXXXXXXXXXXXXXXXXPPVAAEATAIPEVGSSSGAGSAGSLWGNTRRWETLPPQPDAATSDPVXXXXXXXXXXXXXXXXXXXXXXXGEEDLEDESDVRVLLDPIELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAXXXXXXXXXXXXXXGGNQLSAYGGGGGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVASPRLFDGGSQSPINIYGNVHVHLQQGGAQDGGAQQXXXXXXXXXXGQPSPSSELSARERYYSQGETSWSGSERGGQ 764

[Close]

BLAST of Ec-27_003280.1 vs. uniprot
Match: A0A6H5KN06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN06_9PHAE)

HSP 1 Score: 909 bits (2348), Expect = 0.000e+0
Identity = 577/661 (87.29%), Postives = 586/661 (88.65%), Query Frame = 1

Query:  499 SIGGDTVVDTFGAATVPEGRHGAAGSSGSEPSFEPPQAGAASVGQGWSTPGVDAVPAREEPAAEGGEDDDVGKAGSTTATVPADPQGGGVSGXXXXXXXXXXXXAWPGVDNADATEPSVSRAGGSEPVVGTEVFDSSSVGGVSFRSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGAEGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSERPRVVGDGGSGVSTLSPTTPXXXXXXXXSSEHQAMIDREVEHQLDDLFDSIILDDADDPDAEGGEYAVPSEAAVVGSGGVPGQGWGSLVNDHEEEAVDAVREQPAAGPTQAADQDRRTPSSHGDASVHAAADARARGGVSTPGGAPXXXXXXXXXXXXXXXXX-PPVAAEATAIPEVGSSSGAGSAGSLWGNTRRWETLPPQPDAATSDPVXXXXXXXXXXXXXXXXXXXXXXXGEEDLEDESDVRVLLDPIELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAXXXXXXXXXXXXXXGGNQLSAYGGGGGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVASPRLFDGGSQSPINIYGNVHVHLQQGGAQDGGAQQXXXXXXXXXXGQPSPSSELSARERYYSQGETSWSGSERGGQ 2478
            SIG DTVVDTFGAA VPEGRHG AGSSGS+PSFEP QAGAA++GQGWSTPGVDAVPAREEPAAEGGE+DDVGKAGS TATVPADPQGGGVSG             WPGVD ADAT PS  RAGG EPVVGTE FDSSSVGGVS  SNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGAEGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSERPRVVGDG SGVSTLSPT PXXXXXXXX SEHQAMIDREVEHQLDDLFDSIILDDADDPDAEG EY +PSEAA VGS GVPGQGW SLV DHEEEAVDAVREQPAA PTQAADQ RRTPSSHGDASVHAAADARARG         XXXXXXXXXXXXXXXXX PPVAAEATA+PEVGS++GAGSAGSLWGNTRRWETLPPQPDAA SDPV        XXXXXXXXXXXXXX    DLEDESDVRVLLDPIELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAXXXXXXXXXXXXXX  NQLS      GVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVASPRLFDGGSQSPINIYGNVHVHLQQGGAQD GAQQXXXXXXXXXX      SELSARERYYSQGETSWSGS+RGGQ
Sbjct:  163 SIGDDTVVDTFGAAMVPEGRHGVAGSSGSKPSFEPSQAGAAAIGQGWSTPGVDAVPAREEPAAEGGEEDDVGKAGSMTATVPADPQGGGVSGSGSTAAAAVAA-TWPGVDIADATAPSEGRAGGREPVVGTEAFDSSSVGGVSLPSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGAEGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSERPRVVGDGDSGVSTLSPTPPXXXXXXXXXSEHQAMIDREVEHQLDDLFDSIILDDADDPDAEGVEYPLPSEAAAVGSRGVPGQGWSSLVVDHEEEAVDAVREQPAARPTQAADQARRTPSSHGDASVHAAADARARGXXXXXXXXXXXXXXXXXXXXXXXXXXEPPVAAEATALPEVGSAAGAGSAGSLWGNTRRWETLPPQPDAANSDPVVALVEEEEXXXXXXXXXXXXXX----DLEDESDVRVLLDPIELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAXXXXXXXXXXXXXXXXNQLSXXXXXXGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVASPRLFDGGSQSPINIYGNVHVHLQQGGAQDAGAQQXXXXXXXXXXXXXXXXSELSARERYYSQGETSWSGSDRGGQ 818

The following BLAST results are available for this feature:

BLAST of Ec-27_003280.1 vs. uniprot

BLAST of Ec-27_003280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LBN9_ECTSI	0.000e+0	92.49	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KN06_9PHAE	0.000e+0	87.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:2889506..2892544 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2944
Hectar predicted targeting category	other localisation
Gene id	Ec-27_003280.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_003280	Ec-27_003280	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_27 2889506..2892544 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003280.1.1	Ec-27_003280.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 2889506..2889670 +
Ec-27_003280.1.2	Ec-27_003280.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 2889766..2892544 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003280.1	CDS:Ec-27_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_27 2889506..2889670 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003280	3UTR:Ec-27_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_27 2892082..2892544 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003280.1	Ec-27_003280.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_27 2889506..2892081 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_27:2889506..2892544+
coding sequence from alignment at chr_27:2889506..2892544+

mRNA sequence

>Ec-27_003280.1 ID=Ec-27_003280.1|Name=Ec-27_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=827bp
MAMASPYTWGRDGGASSRESRTRLGRGSRRRRTTADKTEEGIITAGAATA
AAGPKAQQASNGGFGGGYEQQQQQPAFPGPPAPGYDPPPEVAQQQGGYPL
GGGSATASTDASFDNRQGQQHPASTPPPFFDPQAPPPVPPQDDGGGGGSS
SGYGNEPRSAGGYGDGSIGGDTVVDTFGAATVPEGRHGAAGSSGSEPSFE
PPQAGAASVGQGWSTPGVDAVPAREEPAAEGGEDDDVGKAGSTTATVPAD
PQGGGVSGSGSTAAAAAAAAAWPGVDNADATEPSVSRAGGSEPVVGTEVF
DSSSVGGVSFRSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGA
EGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSER
PRVVGDGGSGVSTLSPTTPPPLQPPPPSSEHQAMIDREVEHQLDDLFDSI
ILDDADDPDAEGGEYAVPSEAAVVGSGGVPGQGWGSLVNDHEEEAVDAVR
EQPAAGPTQAADQDRRTPSSHGDASVHAAADARARGGVSTPGGAPPGAAS
TSAVAGEEEEGEPPVAAEATAIPEVGSSSGAGSAGSLWGNTRRWETLPPQ
PDAATSDPVVVLVEEEEEEEEEEEEEEEEEEEGEEDLEDESDVRVLLDPI
ELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAGAGAAAAAPSTATAGGN
QLSAYGGGGGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVA
SPRLFDGGSQSPINIYGNVHVHLQQGGAQDGGAQQQQQQQQQQQQGQPSP
SSELSARERYYSQGETSWSGSERGGQ*

spliced messenger RNA

>Ec-27_003280.1 ID=Ec-27_003280.1|Name=Ec-27_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2944bp|location=Sequence derived from alignment at chr_27:2889506..2892544+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATGGCGAGCCCATACACCTGGGGACGAGATGGCGGGGCCTCGTC
TCGAGAGTCAAGGACGCGGTTAGGTCGGGGCAGCCGCCGCCGGCGAACTA
CGGCGGACAAGACGGAGGAGGGTATCATTACGGCGGGGGCGGCGACGGCG
GCGGCTGGGCCGAAGGCTCAACAGGCCTCGAACGGCGGCTTCGGTGGTGG
CTACGAGCAGCAGCAGCAGCAGCCGGCGTTTCCTGGTCCACCAGCACCGG
GTTACGACCCCCCGCCGGAGGTGGCACAGCAGCAGGGCGGGTACCCGCTC
GGTGGCGGCAGCGCCACCGCTTCCACCGATGCCTCTTTCGACAACCGGCA
GGGCCAGCAACACCCCGCGTCCACTCCCCCGCCGTTCTTCGACCCTCAAG
CTCCACCTCCTGTTCCGCCGCAAGACGATGGCGGCGGCGGCGGCAGCAGC
AGCGGGTACGGTAACGAACCTAGGAGCGCGGGGGGGTACGGTGATGGCAG
CATCGGTGGTGACACCGTGGTGGACACGTTCGGTGCCGCCACGGTGCCGG
AGGGTAGGCATGGCGCGGCGGGCAGCAGCGGCTCGGAGCCGTCGTTTGAG
CCCCCGCAGGCGGGAGCTGCGTCGGTAGGGCAGGGCTGGTCAACGCCAGG
CGTGGATGCCGTCCCCGCTAGGGAAGAGCCCGCAGCCGAAGGCGGGGAGG
ATGATGATGTAGGGAAGGCCGGATCGACGACGGCCACGGTACCGGCTGAC
CCACAAGGCGGCGGCGTTTCGGGGAGCGGGTCGACGGCAGCAGCAGCAGC
AGCAGCAGCAGCGTGGCCCGGTGTGGACAACGCCGATGCTACCGAACCCT
CTGTGAGTCGTGCGGGAGGGAGCGAGCCCGTGGTAGGGACGGAGGTATTC
GACAGCAGCAGCGTCGGCGGCGTCTCATTCCGGTCGAACGGGGGCGACGG
CGCCCTAGACACGATGCCAAGCTCGGCAGACCATGGAAAGGAGGAGGTGG
ACTGGGGGACCGGGGTCGAGGAGGACGGTGACGAGGAGGGGAAAGGAGCG
GAGGGCGAGTCCGGGGAGACGGTGGAGGTTCCCGGCTCGGAAGAGAAGCT
CCAACTGGAGAGCGAGGAGAAGGCGCTCATACGCGAGTTGGAGCGCATGG
ACAGCACCATCGGCAACGGGGACGACCCACCGAGCATTGGCAGCGAGAGG
CCGCGGGTTGTTGGCGACGGCGGTAGCGGCGTGTCTACGCTGTCGCCGAC
GACACCGCCGCCGCTGCAGCCGCCGCCGCCGTCGTCGGAGCACCAGGCGA
TGATCGACAGAGAGGTGGAGCACCAGCTGGACGATCTGTTTGACAGCATT
ATCCTCGACGACGCCGACGATCCCGATGCCGAAGGCGGAGAGTACGCCGT
TCCGTCGGAGGCGGCGGTGGTCGGATCAGGGGGCGTGCCGGGGCAAGGCT
GGGGTTCTCTTGTTAACGATCACGAGGAGGAGGCGGTGGACGCGGTGCGA
GAACAGCCGGCGGCGGGGCCCACGCAAGCGGCAGACCAGGATCGTCGCAC
TCCCTCCTCGCACGGTGACGCGAGCGTTCATGCCGCAGCGGACGCGCGGG
CGCGCGGCGGCGTTTCGACGCCCGGCGGCGCTCCCCCCGGGGCCGCGAGC
ACGTCAGCGGTGGCGGGCGAAGAGGAGGAAGGAGAACCGCCGGTGGCAGC
GGAGGCGACGGCGATTCCTGAGGTCGGGTCGTCGTCGGGCGCGGGCTCGG
CGGGATCGTTGTGGGGAAACACCAGGCGCTGGGAAACGTTACCGCCTCAA
CCCGATGCGGCCACCTCTGATCCGGTAGTAGTATTAGTAGAAGAAGAAGA
AGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGG
AGGAAGATTTGGAGGACGAGTCGGATGTACGGGTGCTGCTGGACCCGATC
GAGTTGCCGCCTTCCGCGGCCAGCGACGAGATTTGGAACGACCAGCACCT
GCAGGACCAGCTCGACGCGTACTGGGAGCAGAGCCGGAGGGGGGGCGCGG
GAGCGGGAGCGGCGGCAGCGGCGCCATCGACGGCGACGGCCGGGGGAAAC
CAGCTGTCGGCGTACGGGGGGGGCGGCGGCGTGCCGCACTACGGCCCCGG
CGACTGGGTGGGGGGAAACGGCGGCGGGGCGGCGTTGTTGCCAGAACCGC
TGCCCGGTTCTGCGGCGGACGGCGCCGCTCGTACCAGCGGCTGGGTGGCG
TCGCCTCGCCTTTTCGACGGGGGCAGCCAATCGCCGATCAACATCTACGG
CAACGTTCACGTGCACCTGCAGCAGGGTGGCGCGCAGGACGGCGGGGCTC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGCAACCTTCGCCG
TCTTCGGAGCTTAGCGCGAGGGAAAGATACTACTCGCAGGGGGAGACGAG
CTGGTCGGGCAGCGAGCGAGGGGGGCAGTAGCAGCCGCATGTTTTGAGGG
CGGTCGACAGGGGGGTGACAGCAGTAAAAGTATGCCCTCCATCTTTCTTC
GTCATGGGGTGGGGCCGCCACGGGGGGGGTCCTCTAGAGGCATAAGGGTC
AGTATTCTGGGATGGGAGGTGAGGAGAAAGGCGGGCAGAACTCCCGTGTC
ATGTGTCTACAGTATGTGGTGTTTTTTCCCCGCCGAAAATCGTGAGAGGG
CTAATCAATGTACGCGGCGACTATAAGTGGTGGCATTGTTTTTTCTGGCG
TCTCGGGGGGGGAGATGGACGGTTGATTGGCAGATCGTGCTTAGTCGGGC
GGTAAATTTCGATTTCGAGGCGTGATGCTTTGTTTATCCGTGGCCTTCGT
TTTCGTTGTTCGTGGTTTCGACGCGTTTTGGGCGTTTTACTTCCTCCTCA
TGTATGTTGTTTCAGTAGAAAAATGAGGTTGACCGATGGCCTAG

protein sequence of Ec-27_003280.1

>Ec-27_003280.1 ID=Ec-27_003280.1|Name=Ec-27_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=827bp
MAMASPYTWGRDGGASSRESRTRLGRGSRRRRTTADKTEEGIITAGAATA
AAGPKAQQASNGGFGGGYEQQQQQPAFPGPPAPGYDPPPEVAQQQGGYPL
GGGSATASTDASFDNRQGQQHPASTPPPFFDPQAPPPVPPQDDGGGGGSS
SGYGNEPRSAGGYGDGSIGGDTVVDTFGAATVPEGRHGAAGSSGSEPSFE
PPQAGAASVGQGWSTPGVDAVPAREEPAAEGGEDDDVGKAGSTTATVPAD
PQGGGVSGSGSTAAAAAAAAAWPGVDNADATEPSVSRAGGSEPVVGTEVF
DSSSVGGVSFRSNGGDGALDTMPSSADHGKEEVDWGTGVEEDGDEEGKGA
EGESGETVEVPGSEEKLQLESEEKALIRELERMDSTIGNGDDPPSIGSER
PRVVGDGGSGVSTLSPTTPPPLQPPPPSSEHQAMIDREVEHQLDDLFDSI
ILDDADDPDAEGGEYAVPSEAAVVGSGGVPGQGWGSLVNDHEEEAVDAVR
EQPAAGPTQAADQDRRTPSSHGDASVHAAADARARGGVSTPGGAPPGAAS
TSAVAGEEEEGEPPVAAEATAIPEVGSSSGAGSAGSLWGNTRRWETLPPQ
PDAATSDPVVVLVEEEEEEEEEEEEEEEEEEEGEEDLEDESDVRVLLDPI
ELPPSAASDEIWNDQHLQDQLDAYWEQSRRGGAGAGAAAAAPSTATAGGN
QLSAYGGGGGVPHYGPGDWVGGNGGGAALLPEPLPGSAADGAARTSGWVA
SPRLFDGGSQSPINIYGNVHVHLQQGGAQDGGAQQQQQQQQQQQQGQPSP
SSELSARERYYSQGETSWSGSERGGQ*

mRNA from alignment at chr_27:2889506..2892544+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-27_003280.1 ID=Ec-27_003280.1|Name=Ec-27_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3039bp|location=Sequence derived from alignment at chr_27:2889506..2892544+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAATGGCGAGCCCATACACCTGGGGACGAGATGGCGGGGCCTCGTC
TCGAGAGTCAAGGACGCGGTTAGGTCGGGGCAGCCGCCGCCGGCGAACTA
CGGCGGACAAGACGGAGGAGGGTATCATTACGGCGGGGGCGGCGACGGCG
GCGGCTGGGCCGAAGGTGGGGGCGGGTACTCGCCGCCACGGTCTCCCTGG
GAGGGCGGCGTAGACCAAAACACGGGGTACAGCTCTCCTCCGGTAGGTAG
CGGTGGGCAGGCTCAACAGGCCTCGAACGGCGGCTTCGGTGGTGGCTACG
AGCAGCAGCAGCAGCAGCCGGCGTTTCCTGGTCCACCAGCACCGGGTTAC
GACCCCCCGCCGGAGGTGGCACAGCAGCAGGGCGGGTACCCGCTCGGTGG
CGGCAGCGCCACCGCTTCCACCGATGCCTCTTTCGACAACCGGCAGGGCC
AGCAACACCCCGCGTCCACTCCCCCGCCGTTCTTCGACCCTCAAGCTCCA
CCTCCTGTTCCGCCGCAAGACGATGGCGGCGGCGGCGGCAGCAGCAGCGG
GTACGGTAACGAACCTAGGAGCGCGGGGGGGTACGGTGATGGCAGCATCG
GTGGTGACACCGTGGTGGACACGTTCGGTGCCGCCACGGTGCCGGAGGGT
AGGCATGGCGCGGCGGGCAGCAGCGGCTCGGAGCCGTCGTTTGAGCCCCC
GCAGGCGGGAGCTGCGTCGGTAGGGCAGGGCTGGTCAACGCCAGGCGTGG
ATGCCGTCCCCGCTAGGGAAGAGCCCGCAGCCGAAGGCGGGGAGGATGAT
GATGTAGGGAAGGCCGGATCGACGACGGCCACGGTACCGGCTGACCCACA
AGGCGGCGGCGTTTCGGGGAGCGGGTCGACGGCAGCAGCAGCAGCAGCAG
CAGCAGCGTGGCCCGGTGTGGACAACGCCGATGCTACCGAACCCTCTGTG
AGTCGTGCGGGAGGGAGCGAGCCCGTGGTAGGGACGGAGGTATTCGACAG
CAGCAGCGTCGGCGGCGTCTCATTCCGGTCGAACGGGGGCGACGGCGCCC
TAGACACGATGCCAAGCTCGGCAGACCATGGAAAGGAGGAGGTGGACTGG
GGGACCGGGGTCGAGGAGGACGGTGACGAGGAGGGGAAAGGAGCGGAGGG
CGAGTCCGGGGAGACGGTGGAGGTTCCCGGCTCGGAAGAGAAGCTCCAAC
TGGAGAGCGAGGAGAAGGCGCTCATACGCGAGTTGGAGCGCATGGACAGC
ACCATCGGCAACGGGGACGACCCACCGAGCATTGGCAGCGAGAGGCCGCG
GGTTGTTGGCGACGGCGGTAGCGGCGTGTCTACGCTGTCGCCGACGACAC
CGCCGCCGCTGCAGCCGCCGCCGCCGTCGTCGGAGCACCAGGCGATGATC
GACAGAGAGGTGGAGCACCAGCTGGACGATCTGTTTGACAGCATTATCCT
CGACGACGCCGACGATCCCGATGCCGAAGGCGGAGAGTACGCCGTTCCGT
CGGAGGCGGCGGTGGTCGGATCAGGGGGCGTGCCGGGGCAAGGCTGGGGT
TCTCTTGTTAACGATCACGAGGAGGAGGCGGTGGACGCGGTGCGAGAACA
GCCGGCGGCGGGGCCCACGCAAGCGGCAGACCAGGATCGTCGCACTCCCT
CCTCGCACGGTGACGCGAGCGTTCATGCCGCAGCGGACGCGCGGGCGCGC
GGCGGCGTTTCGACGCCCGGCGGCGCTCCCCCCGGGGCCGCGAGCACGTC
AGCGGTGGCGGGCGAAGAGGAGGAAGGAGAACCGCCGGTGGCAGCGGAGG
CGACGGCGATTCCTGAGGTCGGGTCGTCGTCGGGCGCGGGCTCGGCGGGA
TCGTTGTGGGGAAACACCAGGCGCTGGGAAACGTTACCGCCTCAACCCGA
TGCGGCCACCTCTGATCCGGTAGTAGTATTAGTAGAAGAAGAAGAAGAAG
AAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGAA
GATTTGGAGGACGAGTCGGATGTACGGGTGCTGCTGGACCCGATCGAGTT
GCCGCCTTCCGCGGCCAGCGACGAGATTTGGAACGACCAGCACCTGCAGG
ACCAGCTCGACGCGTACTGGGAGCAGAGCCGGAGGGGGGGCGCGGGAGCG
GGAGCGGCGGCAGCGGCGCCATCGACGGCGACGGCCGGGGGAAACCAGCT
GTCGGCGTACGGGGGGGGCGGCGGCGTGCCGCACTACGGCCCCGGCGACT
GGGTGGGGGGAAACGGCGGCGGGGCGGCGTTGTTGCCAGAACCGCTGCCC
GGTTCTGCGGCGGACGGCGCCGCTCGTACCAGCGGCTGGGTGGCGTCGCC
TCGCCTTTTCGACGGGGGCAGCCAATCGCCGATCAACATCTACGGCAACG
TTCACGTGCACCTGCAGCAGGGTGGCGCGCAGGACGGCGGGGCTCAGCAA
CAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGCAACCTTCGCCGTCTTC
GGAGCTTAGCGCGAGGGAAAGATACTACTCGCAGGGGGAGACGAGCTGGT
CGGGCAGCGAGCGAGGGGGGCAGTAGCAGCCGCATGTTTTGAGGGCGGTC
GACAGGGGGGTGACAGCAGTAAAAGTATGCCCTCCATCTTTCTTCGTCAT
GGGGTGGGGCCGCCACGGGGGGGGTCCTCTAGAGGCATAAGGGTCAGTAT
TCTGGGATGGGAGGTGAGGAGAAAGGCGGGCAGAACTCCCGTGTCATGTG
TCTACAGTATGTGGTGTTTTTTCCCCGCCGAAAATCGTGAGAGGGCTAAT
CAATGTACGCGGCGACTATAAGTGGTGGCATTGTTTTTTCTGGCGTCTCG
GGGGGGGAGATGGACGGTTGATTGGCAGATCGTGCTTAGTCGGGCGGTAA
ATTTCGATTTCGAGGCGTGATGCTTTGTTTATCCGTGGCCTTCGTTTTCG
TTGTTCGTGGTTTCGACGCGTTTTGGGCGTTTTACTTCCTCCTCATGTAT
GTTGTTTCAGTAGAAAAATGAGGTTGACCGATGGCCTAG

Coding sequence (CDS) from alignment at chr_27:2889506..2892544+

>Ec-27_003280.1 ID=Ec-27_003280.1|Name=Ec-27_003280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2481bp|location=Sequence derived from alignment at chr_27:2889506..2892544+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAATGGCGAGCCCATACACCTGGGGACGAGATGGCGGGGCCTCGTC
TCGAGAGTCAAGGACGCGGTTAGGTCGGGGCAGCCGCCGCCGGCGAACTA
CGGCGGACAAGACGGAGGAGGGTATCATTACGGCGGGGGCGGCGACGGCG
GCGGCTGGGCCGAAGGCTCAACAGGCCTCGAACGGCGGCTTCGGTGGTGG
CTACGAGCAGCAGCAGCAGCAGCCGGCGTTTCCTGGTCCACCAGCACCGG
GTTACGACCCCCCGCCGGAGGTGGCACAGCAGCAGGGCGGGTACCCGCTC
GGTGGCGGCAGCGCCACCGCTTCCACCGATGCCTCTTTCGACAACCGGCA
GGGCCAGCAACACCCCGCGTCCACTCCCCCGCCGTTCTTCGACCCTCAAG
CTCCACCTCCTGTTCCGCCGCAAGACGATGGCGGCGGCGGCGGCAGCAGC
AGCGGGTACGGTAACGAACCTAGGAGCGCGGGGGGGTACGGTGATGGCAG
CATCGGTGGTGACACCGTGGTGGACACGTTCGGTGCCGCCACGGTGCCGG
AGGGTAGGCATGGCGCGGCGGGCAGCAGCGGCTCGGAGCCGTCGTTTGAG
CCCCCGCAGGCGGGAGCTGCGTCGGTAGGGCAGGGCTGGTCAACGCCAGG
CGTGGATGCCGTCCCCGCTAGGGAAGAGCCCGCAGCCGAAGGCGGGGAGG
ATGATGATGTAGGGAAGGCCGGATCGACGACGGCCACGGTACCGGCTGAC
CCACAAGGCGGCGGCGTTTCGGGGAGCGGGTCGACGGCAGCAGCAGCAGC
AGCAGCAGCAGCGTGGCCCGGTGTGGACAACGCCGATGCTACCGAACCCT
CTGTGAGTCGTGCGGGAGGGAGCGAGCCCGTGGTAGGGACGGAGGTATTC
GACAGCAGCAGCGTCGGCGGCGTCTCATTCCGGTCGAACGGGGGCGACGG
CGCCCTAGACACGATGCCAAGCTCGGCAGACCATGGAAAGGAGGAGGTGG
ACTGGGGGACCGGGGTCGAGGAGGACGGTGACGAGGAGGGGAAAGGAGCG
GAGGGCGAGTCCGGGGAGACGGTGGAGGTTCCCGGCTCGGAAGAGAAGCT
CCAACTGGAGAGCGAGGAGAAGGCGCTCATACGCGAGTTGGAGCGCATGG
ACAGCACCATCGGCAACGGGGACGACCCACCGAGCATTGGCAGCGAGAGG
CCGCGGGTTGTTGGCGACGGCGGTAGCGGCGTGTCTACGCTGTCGCCGAC
GACACCGCCGCCGCTGCAGCCGCCGCCGCCGTCGTCGGAGCACCAGGCGA
TGATCGACAGAGAGGTGGAGCACCAGCTGGACGATCTGTTTGACAGCATT
ATCCTCGACGACGCCGACGATCCCGATGCCGAAGGCGGAGAGTACGCCGT
TCCGTCGGAGGCGGCGGTGGTCGGATCAGGGGGCGTGCCGGGGCAAGGCT
GGGGTTCTCTTGTTAACGATCACGAGGAGGAGGCGGTGGACGCGGTGCGA
GAACAGCCGGCGGCGGGGCCCACGCAAGCGGCAGACCAGGATCGTCGCAC
TCCCTCCTCGCACGGTGACGCGAGCGTTCATGCCGCAGCGGACGCGCGGG
CGCGCGGCGGCGTTTCGACGCCCGGCGGCGCTCCCCCCGGGGCCGCGAGC
ACGTCAGCGGTGGCGGGCGAAGAGGAGGAAGGAGAACCGCCGGTGGCAGC
GGAGGCGACGGCGATTCCTGAGGTCGGGTCGTCGTCGGGCGCGGGCTCGG
CGGGATCGTTGTGGGGAAACACCAGGCGCTGGGAAACGTTACCGCCTCAA
CCCGATGCGGCCACCTCTGATCCGGTAGTAGTATTAGTAGAAGAAGAAGA
AGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGG
AGGAAGATTTGGAGGACGAGTCGGATGTACGGGTGCTGCTGGACCCGATC
GAGTTGCCGCCTTCCGCGGCCAGCGACGAGATTTGGAACGACCAGCACCT
GCAGGACCAGCTCGACGCGTACTGGGAGCAGAGCCGGAGGGGGGGCGCGG
GAGCGGGAGCGGCGGCAGCGGCGCCATCGACGGCGACGGCCGGGGGAAAC
CAGCTGTCGGCGTACGGGGGGGGCGGCGGCGTGCCGCACTACGGCCCCGG
CGACTGGGTGGGGGGAAACGGCGGCGGGGCGGCGTTGTTGCCAGAACCGC
TGCCCGGTTCTGCGGCGGACGGCGCCGCTCGTACCAGCGGCTGGGTGGCG
TCGCCTCGCCTTTTCGACGGGGGCAGCCAATCGCCGATCAACATCTACGG
CAACGTTCACGTGCACCTGCAGCAGGGTGGCGCGCAGGACGGCGGGGCTC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGCAACCTTCGCCG
TCTTCGGAGCTTAGCGCGAGGGAAAGATACTACTCGCAGGGGGAGACGAG
CTGGTCGGGCAGCGAGCGAGGGGGGCAGTAG

Synonyms

The feature 'Ec-27_003280.1' has the following synonyms


Synonym
Esi0000_0561
Esi_0000_0561