Ec-27_003210.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_003210.1
Unique NameEc-27_003210.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length97
Homology
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A6H5KLW2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLW2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.320e-59
Identity = 90/96 (93.75%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTEAGVLPEPGETPTRSKTHEQNAAIKKQLEEIRSKR 288
            MGIMDDFS+GHQRLKERIHNFR+PLSRPGRIAM+IVYFSIPV+GGHYLMQWAQERAQVNLT+AGVLP+PGETPTRSKTHEQNAAIKKQLEEIRSKR
Sbjct:    1 MGIMDDFSAGHQRLKERIHNFRIPLSRPGRIAMSIVYFSIPVVGGHYLMQWAQERAQVNLTDAGVLPKPGETPTRSKTHEQNAAIKKQLEEIRSKR 96
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A8K1CHE5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHE5_PYTOL)

HSP 1 Score: 78.2 bits (191), Expect = 7.650e-17
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVN--LTEAGVLPEPGETPTRSKTHEQNAAIKKQLE 270
            +  +    + H+RLK+RIH+FR+PLS+ G+ AM++VYFS+PVIGG+++M+WA+ RA  N  L E  +    G + T+S    QN  +++ LE
Sbjct:    3 LAYLRQLGAAHERLKKRIHSFRIPLSKNGQRAMSVVYFSVPVIGGYFVMKWAERRADRNFQLEEDKIRNATGASTTKS-VQRQNEQLRRMLE 93
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BLAST of Ec-27_003210.1 vs. uniprot
Match: T0R506_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R506_SAPDV)

HSP 1 Score: 76.6 bits (187), Expect = 2.640e-16
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTEAGVLPEPGETPTRSKTHEQNAAIKKQLEEI 276
            MG + D    H RLK+RIH  R+PLS  G   M +VYF+ P+IGG+++MQWAQ R+  NL +    P     PT++ T  QN ++K  L++I
Sbjct:    1 MGWLRDLGDAHTRLKKRIHGTRIPLSPAGIRFMKVVYFTTPIIGGYFVMQWAQARSVANLRDLHAPP-----PTQNPTSYQNDSLKGLLKDI 87
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A2D4BV99_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV99_PYTIN)

HSP 1 Score: 76.6 bits (187), Expect = 3.090e-16
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNL 180
            +  + D  + H+RLK+R+H FR+PLS+ G+ AM +VYFSIPVIGG+++M+WA+ RA+ N 
Sbjct:    2 LSFLRDIGAAHERLKKRVHAFRIPLSKNGQRAMGVVYFSIPVIGGYFVMKWAERRAERNF 61
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A067CWF0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CWF0_SAPPC)

HSP 1 Score: 79.3 bits (194), Expect = 3.040e-15
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTEAGVLPEPGETPTRSKTHEQNAAIKKQLEEI 276
            MG + D S  H RLK+RIH  R+PLS  G   M +VYF+ P+IGG+++MQWAQ R+  NL +    P     PT++ T  QN ++K  L++I
Sbjct:    1 MGWLRDLSDAHTRLKKRIHGTRIPLSPAGIRVMKVVYFTTPIIGGYFVMQWAQARSAANLRDLHAPP-----PTQNPTSYQNDSLKGLLKDI 87
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A7R9U3Q2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3Q2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.730e-15
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQR---LKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTEAG 192
            MG  +     H+R   LK RIHNFRMPLS  G+  M  VYF IPVIGG+Y+MQWAQ +A+ NL + G
Sbjct:    1 MGFFELLRQLHERQENLKHRIHNFRMPLSPAGQRFMGFVYFCIPVIGGYYIMQWAQRQAEKNLGKHG 67
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A835YNY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.860e-14
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   16 DFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTEAGVL 198
            D    H+ LK+RIHNFR+PLS  G++AM +VYF++P +GG  +MQWA+ +A  NL    V+
Sbjct:    2 DLRGRHEALKKRIHNFRIPLSPRGQLAMQVVYFTVPFVGGMAIMQWARSKADKNLEHLQVV 62
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A3M6VCE9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCE9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.330e-12
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNL 180
            M  +   S  HQ LK++IH+ R+PLS  G+  M +VYF+ P+IGG+Y+M+WA+ RA  N 
Sbjct:    1 MEFLRRLSKRHQELKQKIHSTRIPLSNNGQRVMALVYFTAPIIGGYYVMKWAERRADANF 60
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A0P1AWP4_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWP4_PLAHL)

HSP 1 Score: 66.2 bits (160), Expect = 3.410e-12
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   31 HQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTEAGVLPEPGETPTRSKTHEQNAAIKKQLEEI 276
            H+ LK +IH+ R+PLS+ G+  M +VYF+ P++GG+Y+M+WA+ RA  N     +              +QN  +KKQL+++
Sbjct:   11 HEALKLKIHSTRIPLSKNGQRIMGVVYFTTPIVGGYYIMKWAEGRANANFQREEIEIRRAAGNNARNVAQQNQQLKKQLQQM 92
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BLAST of Ec-27_003210.1 vs. uniprot
Match: A0A1V9YL34_9STRA (Calcyphosin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL34_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.780e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNLTE 186
            MG + D S  H RLK++IH  R+PLS  G   M +VYF+ P+IGG+++MQWAQ R+  NL +
Sbjct:    1 MGWLRDLSDAHTRLKKKIHGTRIPLSPAGIRMMKVVYFTTPIIGGYFVMQWAQNRSVSNLRD 62
The following BLAST results are available for this feature:
BLAST of Ec-27_003210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KLW2_9PHAE2.320e-5993.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1CHE5_PYTOL7.650e-1742.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0R506_SAPDV2.640e-1643.48Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A2D4BV99_PYTIN3.090e-1651.67Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067CWF0_SAPPC3.040e-1544.57Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7R9U3Q2_9STRA9.730e-1555.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YNY3_9STRA5.860e-1449.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M6VCE9_9STRA3.330e-1246.67Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1AWP4_PLAHL3.410e-1236.59Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A1V9YL34_9STRA5.780e-1250.00Calcyphosin n=1 Tax=Achlya hypogyna TaxID=1202772 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:2836015..2836305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.1e-47
Seed eggNOG ortholog2880.D8LBP5
Length291
Hectar predicted targeting categoryother localisation
Gene idEc-27_003210.1
EggNOG OGs2E32P@1,2SA7S@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_003210Ec-27_003210Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 2835711..2838297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_003210.1.1Ec-27_003210.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2836015..2836305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_003210.1CDS:Ec-27_003210.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 2836015..2836305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_003210.1Ec-27_003210.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 2836015..2836305 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_003210.1 ID=Ec-27_003210.1|Name=Ec-27_003210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=97bp
MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQ
WAQERAQVNLTEAGVLPEPGETPTRSKTHEQNAAIKKQLEEIRSKR*
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spliced messenger RNA

>Ec-27_003210.1 ID=Ec-27_003210.1|Name=Ec-27_003210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=291bp|location=Sequence derived from alignment at chr_27:2836015..2836305+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAATCATGGATGACTTCAGCTCGGGACACCAGCGGCTCAAGGAGCG
AATCCACAACTTCCGGATGCCCCTGTCACGGCCCGGCCGCATCGCCATGA
ACATCGTGTACTTCTCGATCCCGGTGATAGGGGGGCACTACCTCATGCAG
TGGGCGCAGGAACGAGCGCAGGTGAACCTGACGGAAGCGGGCGTGCTGCC
GGAGCCGGGAGAGACACCAACGAGGTCAAAGACCCATGAACAAAACGCCG
CCATCAAGAAACAACTAGAGGAAATTAGATCGAAGAGATGA
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protein sequence of Ec-27_003210.1

>Ec-27_003210.1 ID=Ec-27_003210.1|Name=Ec-27_003210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=97bp
MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQ
WAQERAQVNLTEAGVLPEPGETPTRSKTHEQNAAIKKQLEEIRSKR*
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mRNA from alignment at chr_27:2836015..2836305+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_003210.1 ID=Ec-27_003210.1|Name=Ec-27_003210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=291bp|location=Sequence derived from alignment at chr_27:2836015..2836305+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGAATCATGGATGACTTCAGCTCGGGACACCAGCGGCTCAAGGAGCG
AATCCACAACTTCCGGATGCCCCTGTCACGGCCCGGCCGCATCGCCATGA
ACATCGTGTACTTCTCGATCCCGGTGATAGGGGGGCACTACCTCATGCAG
TGGGCGCAGGAACGAGCGCAGGTGAACCTGACGGAAGCGGGCGTGCTGCC
GGAGCCGGGAGAGACACCAACGAGGTCAAAGACCCATGAACAAAACGCCG
CCATCAAGAAACAACTAGAGGAAATTAGATCGAAGAGATGA
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Coding sequence (CDS) from alignment at chr_27:2836015..2836305+

>Ec-27_003210.1 ID=Ec-27_003210.1|Name=Ec-27_003210.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=291bp|location=Sequence derived from alignment at chr_27:2836015..2836305+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGAATCATGGATGACTTCAGCTCGGGACACCAGCGGCTCAAGGAGCG
AATCCACAACTTCCGGATGCCCCTGTCACGGCCCGGCCGCATCGCCATGA
ACATCGTGTACTTCTCGATCCCGGTGATAGGGGGGCACTACCTCATGCAG
TGGGCGCAGGAACGAGCGCAGGTGAACCTGACGGAAGCGGGCGTGCTGCC
GGAGCCGGGAGAGACACCAACGAGGTCAAAGACCCATGAACAAAACGCCG
CCATCAAGAAACAACTAGAGGAAATTAGATCGAAGAGATGA
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Synonyms
The feature 'Ec-27_003210.1' has the following synonyms
Synonym
Esi0000_0570
Esi_0000_0570