Ec-27_003200.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-27_003200.2
Unique Name	Ec-27_003200.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	607

Homology

[Close]

BLAST of Ec-27_003200.2 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI)

HSP 1 Score: 980 bits (2534), Expect = 1.610e-310
Identity = 606/606 (100.00%), Postives = 606/606 (100.00%), Query Frame = 3

Query:  801 MEGEVSTPQPESTAKAEADGGSGRWWGGRIPDTVAQASDVGVGERSSVEPDDGRATEEQDSHVTSAETVAEADGADSNSLRGGVDSVPRRKPANGAPGDDSKAARKDYARSGKPKWPKGSGRGDVDGSEAKKPGESGGDLESSVKADIQGAGEFVVPSASEEPIPKVDENAGDDASPTLSATTATLSGVGAVADDSTVGGAAVVYTNSDGASTAADYRESAMSPASQPQRLTSSPGTKSEESADSDNGSQRSGGTATAGDASTAAGEGKGEDNGAKETVEDKTSVGEGVVLKRAAAAAETASVGFSEGGAADAAIKGAGSSVGPSAGSFSHXXXXXXXXXXXXXXXXXXXXXXXAIVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWEVFYYAALEDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFAGTSFVRGEGQAGAGPPEEPRNERSLSGEDAPYGGAVLEEEKVDLCDKIWEVIREVTAPLDASAAXXXXXXXXXXXXXXXXXXXXDATEVRATSVGVDPDADGSARAVEEEGGGAEDPPSQPRRSTRTWAKGSGXXXXXXXXXNVRGVGGARDSRT 2618
            MEGEVSTPQPESTAKAEADGGSGRWWGGRIPDTVAQASDVGVGERSSVEPDDGRATEEQDSHVTSAETVAEADGADSNSLRGGVDSVPRRKPANGAPGDDSKAARKDYARSGKPKWPKGSGRGDVDGSEAKKPGESGGDLESSVKADIQGAGEFVVPSASEEPIPKVDENAGDDASPTLSATTATLSGVGAVADDSTVGGAAVVYTNSDGASTAADYRESAMSPASQPQRLTSSPGTKSEESADSDNGSQRSGGTATAGDASTAAGEGKGEDNGAKETVEDKTSVGEGVVLKRAAAAAETASVGFSEGGAADAAIKGAGSSVGPSAGSFSHXXXXXXXXXXXXXXXXXXXXXXXAIVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWEVFYYAALEDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFAGTSFVRGEGQAGAGPPEEPRNERSLSGEDAPYGGAVLEEEKVDLCDKIWEVIREVTAPLDASAAXXXXXXXXXXXXXXXXXXXXDATEVRATSVGVDPDADGSARAVEEEGGGAEDPPSQPRRSTRTWAKGSGXXXXXXXXXNVRGVGGARDSRT
Sbjct: 4138 MEGEVSTPQPESTAKAEADGGSGRWWGGRIPDTVAQASDVGVGERSSVEPDDGRATEEQDSHVTSAETVAEADGADSNSLRGGVDSVPRRKPANGAPGDDSKAARKDYARSGKPKWPKGSGRGDVDGSEAKKPGESGGDLESSVKADIQGAGEFVVPSASEEPIPKVDENAGDDASPTLSATTATLSGVGAVADDSTVGGAAVVYTNSDGASTAADYRESAMSPASQPQRLTSSPGTKSEESADSDNGSQRSGGTATAGDASTAAGEGKGEDNGAKETVEDKTSVGEGVVLKRAAAAAETASVGFSEGGAADAAIKGAGSSVGPSAGSFSHXXXXXXXXXXXXXXXXXXXXXXXAIVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWEVFYYAALEDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFAGTSFVRGEGQAGAGPPEEPRNERSLSGEDAPYGGAVLEEEKVDLCDKIWEVIREVTAPLDASAAXXXXXXXXXXXXXXXXXXXXDATEVRATSVGVDPDADGSARAVEEEGGGAEDPPSQPRRSTRTWAKGSGXXXXXXXXXNVRGVGGARDSRT 4743

[Close]

BLAST of Ec-27_003200.2 vs. uniprot
Match: A0A6H5KP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP05_9PHAE)

HSP 1 Score: 760 bits (1962), Expect = 1.480e-234
Identity = 478/634 (75.39%), Postives = 490/634 (77.29%), Query Frame = 3

Query:  798 GMEGEVSTPQPESTAKAEADGGSGRWWGGRIPDTVAQASDVGVGERSSVEPDDGRATEEQDSHVTSAETVAEADGADSNSLRGGVDSVPRRKPANGAPGDDSKAARKDYARSGKPKWPKGSGRGDVDGSEAKKPGESGGDLESSVKADIQGAGEFVVPSASEEPIPKVDENAGDDASPTLSATTATLSGVGAVADDSTVGGAAVVYTNSDGASTAADYRESAMSPASQPQRLTSSPGTKSEESADSDNGSQRSGGTATAGDASTAAGEGKGEDNGAKETVEDKTSVGEG-VVLKRAAAAAETASVGFSEGGAADAAIKGAGSSVGPSAGSFSHXXXXXXXXXXXXXXXXXXXXXXXAIVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWEVFYYAAL-------------------------EDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFAGTSFVRGEGQAGAGPPEEPRNERSLSGEDAPYGGAVLEEEK-VDLCDKIWEVIREVTAPLDASAAXXXXXXXXXXXXXXXXXXXXDATEVRATSVGVDPDADGSARAVEEEGGGAEDPPSQPRRSTRTWAKGSGXXXXXXXXXNVRGVGGARDSRT 2618
            GM GEVSTPQPESTAKAEADGG GRWWGGR+PDTV QASDVGVGERS VEPDDGRATEEQDS VTSAETVAEADGAD NSLR GVDS  R KPANG PGDDSKA+ KDY RSGKPKW KGSGRGDVDGSE KK  ESGGD E  V ADIQGA E VVP+ASEEPIP VDENAGDDASPTLSAT   LSGV A ADDST+  A VV TN D ASTAAD  ES +SPASQPQ LT SPGTKSEE ADS N SQ S GT T GDASTAAGEGKGED+ AKE +ED+TSVGEG VVL+RAAAAAETASVG SEGG  D AIKGA  SVGPSAG F                         AIVSD DAKRAR KAKLGV KLQQGEAEKA+SLFEQAA IDPGWWEVFYYAAL                         ED EVAKLA+LASQVLAALEDDEQHGSTAEILKTAMDSSGLMFAGTSFVRGEG+AGAGPP EPRNERSLSG DAP GGAVLEEEK VDLCDKIWEVIREVTAPLDASAA                    DATEVRATSVGVDPDADGSA A EE GGGAED  SQPRRSTRTWAKGSGXXXXXXXX   RGVGGARDSRT
Sbjct: 3004 GMLGEVSTPQPESTAKAEADGGRGRWWGGRVPDTVVQASDVGVGERSPVEPDDGRATEEQDSQVTSAETVAEADGADLNSLRRGVDSAHRWKPANGTPGDDSKASPKDYTRSGKPKWRKGSGRGDVDGSETKKAEESGGDSEILVTADIQGAEELVVPTASEEPIPMVDENAGDDASPTLSATAPMLSGVAAGADDSTLRRATVVDTNPDSASTAADSPESDISPASQPQWLTRSPGTKSEEPADSGNVSQGSCGTPTTGDASTAAGEGKGEDDCAKEAIEDRTSVGEGGVVLERAAAAAETASVGSSEGGVTDVAIKGADISVGPSAGDFPRGTAGSESGSVVTGAADGAANGV-AIVSDVDAKRARDKAKLGVVKLQQGEAEKAISLFEQAASIDPGWWEVFYYAALAHETLGNTAAAAHALVSALGIPAHTEDVEVAKLATLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFAGTSFVRGEGRAGAGPPGEPRNERSLSGGDAPDGGAVLEEEKKVDLCDKIWEVIREVTAPLDASAAVDAPSVDDAGAAELAEDEGRDATEVRATSVGVDPDADGSAVADEEGGGGAEDALSQPRRSTRTWAKGSGXXXXXXXXKEARGVGGARDSRT 3636

[Close]

BLAST of Ec-27_003200.2 vs. uniprot
Match: A0A6H5KCW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.220e-19
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 3

Query: 1866 IVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWEVFYYAAL-------------------------EDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFA 2153
            +VS+DDAKRAR KAKLG+AKLQQG+A+KAVSLFE+AA IDPGWW  FYYAAL                         E+ EVA L++L+S+VLAAL   +Q    A +LKTAMD+SGL FA
Sbjct:  959 VVSEDDAKRARAKAKLGMAKLQQGQAKKAVSLFEKAASIDPGWWGGFYYAALAHDALGNAEAAAGALVSALSVPAPTEENEVAGLSALSSKVLAALSRGKQVP-VAAVLKTAMDTSGLTFA 1078

[Close]

BLAST of Ec-27_003200.2 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.790e-19
Identity = 66/121 (54.55%), Postives = 81/121 (66.94%), Query Frame = 3

Query: 1866 IVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWEVFYYAAL-------------------------EDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMFA 2153
            +VS+DD KRAR KAKLG+AKLQQG+A+KAVSLFE+AA IDPGWW  FYYAAL                         E+ EVA L++L+S+VLAAL+  +Q    A +LKTAMD+SGL FA
Sbjct: 1027 VVSEDDVKRARAKAKLGMAKLQQGQAKKAVSLFEKAASIDPGWWGGFYYAALAHDALGNAEAAAGALVSALSVPAPTEENEVAGLSALSSKVLAALDRGKQVP-VAAVLKTAMDTSGLTFA 1146

The following BLAST results are available for this feature:

BLAST of Ec-27_003200.2 vs. uniprot

BLAST of Ec-27_003200.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D8LBP6_ECTSI	1.610e-310	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KP05_9PHAE	1.480e-234	75.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCW1_9PHAE	1.220e-19	55.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FQ17_ECTSI	2.790e-19	54.55	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:2806307..2810804 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	1005.4
Seed ortholog evalue	1.2e-290
Seed eggNOG ortholog	2880.D8LBP6
Length	3860
Hectar predicted targeting category	other localisation
Gene id	Ec-27_003200.2
EggNOG free text desc.	MgtC family
EggNOG OGs	2S8UQ@2759,COG1285@1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_003200	Ec-27_003200	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_27 2806307..2835114 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003200.2	Ec-27_003200.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_27 2807545..2810003 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003200.2.3	Ec-27_003200.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 2806307..2808069 -
Ec-27_003200.2.2	Ec-27_003200.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 2808404..2808477 -
Ec-27_003200.2.1	Ec-27_003200.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 2808782..2810804 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003200	3UTR:Ec-27_003200.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_27 2806307..2807544 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003200.2	CDS:Ec-27_003200.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_27 2807545..2808069 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_003200	5UTR:Ec-27_003200.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_27 2810004..2810804 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_27:2806307..2810804-
coding sequence from alignment at chr_27:2806307..2810804-

mRNA sequence

>Ec-27_003200.2 ID=Ec-27_003200.2|Name=Ec-27_003200.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=607bp
MEGEVSTPQPESTAKAEADGGSGRWWGGRIPDTVAQASDVGVGERSSVEP
DDGRATEEQDSHVTSAETVAEADGADSNSLRGGVDSVPRRKPANGAPGDD
SKAARKDYARSGKPKWPKGSGRGDVDGSEAKKPGESGGDLESSVKADIQG
AGEFVVPSASEEPIPKVDENAGDDASPTLSATTATLSGVGAVADDSTVGG
AAVVYTNSDGASTAADYRESAMSPASQPQRLTSSPGTKSEESADSDNGSQ
RSGGTATAGDASTAAGEGKGEDNGAKETVEDKTSVGEGVVLKRAAAAAET
ASVGFSEGGAADAAIKGAGSSVGPSAGSFSHGTATGPESGGVVTGGADGA
ANGAAIVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWE
VFYYAALEDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMF
AGTSFVRGEGQAGAGPPEEPRNERSLSGEDAPYGGAVLEEEKVDLCDKIW
EVIREVTAPLDASAAVDAPSVDDAETAERTEDEERDATEVRATSVGVDPD
ADGSARAVEEEGGGAEDPPSQPRRSTRTWAKGSGWAKGLGWTKNVRGVGG
ARDSRT*

spliced messenger RNA

>Ec-27_003200.2 ID=Ec-27_003200.2|Name=Ec-27_003200.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3860bp|location=Sequence derived from alignment at chr_27:2806307..2810804- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTAGCCCAAGTTCATGATTGCCCCCGTCCTCCAGCAGACTCCGCAGTTGT
CGCTCGTGTAAGCGGGGCGACGGTCTCAGAGGTCTTCTTCCCTAATAAAC
ACATCACTGACGCCCGCGTCTCTTACTGCCGAACATGGGTGCCGGTGTTC
GACAGCGTGCTGGAAAAGATCACTCGTTCTTGCGCGGTTTTGAGCCGCGT
ACCGGGTCCATGACTGCCGGTCATGATCCGCAAGACCCTTTGGACACTAT
TACCATCAAATGCCGAGAGGCCCCTCGCATCCCATTCAACATCACGAGTC
GAACACGACACTATCACGTGTGACGCTGGCACTTGTTCTCATCGTTTTTT
TTCTTACAAACGCACAACAATTCATCTCTTTCACATATAAGGTGTTTGTA
TTCTTGTCGTGGGTTGTGGGGAGAGCCGTGTAAACCTCGAACTCAAATCG
TACCTGTGCTGGTTGCCGTTGAAGACGATGGACAAACAGCCACCGGCCTG
CTTCGCTATTGGATCCACCAGCTGTCAAAATGTCGTGTCCTTGTCCCCGC
GAACAACCGGACTCGTCTGTTAAATTCTTCCCCGCTTACCATGGCGTCCC
CGATCGCAACAAACGGACGATAGGGCCAAGCCCAGTGCCGAAGATACAGA
CGGCGAGGACGGGGGCGATGGTGTCAAGGGCTCCCTAGCCAAGGAAGATG
AGAGCATCCAAGATGATGTCGACACGGCAGACAAGGTTACGAGCGACACC
AGCGATGCAGGTGTCAGCGGCAGCAAGAACGGTGCTGAACCCAAGGCGGA
TATGGAAGGAGAGGTCTCGACACCGCAGCCGGAATCGACGGCCAAGGCTG
AAGCCGACGGTGGCAGTGGTCGGTGGTGGGGCGGTCGCATCCCGGACACT
GTCGCCCAGGCGTCCGATGTTGGCGTTGGGGAGCGATCGTCGGTAGAGCC
TGACGATGGTCGTGCGACGGAGGAGCAGGACAGTCACGTGACTTCAGCAG
AAACAGTAGCAGAGGCAGACGGAGCGGACTCGAACAGCCTCCGCGGCGGT
GTGGACTCAGTCCCTCGGCGGAAGCCGGCCAACGGTGCCCCCGGTGATGA
TTCGAAGGCGGCGCGCAAGGACTACGCTAGAAGCGGCAAGCCAAAATGGC
CAAAGGGCAGTGGGCGTGGGGACGTGGATGGTTCTGAAGCGAAGAAGCCG
GGGGAGAGTGGTGGCGATTTGGAGAGCTCGGTCAAGGCCGACATACAAGG
AGCCGGAGAATTTGTGGTACCGTCGGCGTCTGAGGAGCCGATCCCAAAGG
TCGACGAAAACGCCGGAGACGACGCATCGCCCACACTCAGTGCCACGACT
GCGACGTTGTCTGGAGTTGGTGCTGTAGCCGATGATAGCACCGTGGGAGG
AGCTGCCGTTGTCTACACAAACTCCGACGGCGCGTCAACAGCAGCTGATT
ATCGGGAATCGGCCATGTCTCCTGCATCGCAGCCGCAGCGGTTGACCAGT
AGCCCGGGGACAAAGTCGGAGGAATCAGCGGACTCAGACAATGGGTCACA
AAGGAGCGGTGGCACGGCAACGGCAGGTGATGCAAGCACGGCAGCGGGGG
AGGGAAAAGGAGAGGACAACGGCGCAAAAGAAACGGTAGAGGACAAGACG
TCGGTAGGAGAGGGCGTCGTCCTCAAGCGCGCCGCAGCCGCCGCAGAGAC
CGCTAGCGTCGGTTTTTCTGAGGGTGGTGCGGCCGACGCGGCGATCAAAG
GTGCCGGTAGCAGCGTGGGACCCAGTGCGGGTAGTTTTTCCCATGGAACG
GCGACGGGACCGGAGAGCGGCGGTGTTGTGACAGGTGGCGCTGATGGTGC
TGCGAATGGTGCTGCGATCGTTTCCGACGACGACGCCAAGCGCGCGAGAG
TCAAGGCCAAGCTGGGAGTGGCCAAGCTGCAGCAGGGTGAGGCGGAAAAG
GCGGTGTCTCTGTTCGAGCAGGCGGCCCTCATCGACCCAGGGTGGTGGGA
AGTTTTCTACTACGCGGCTCTCGAGGATGCGGAGGTTGCAAAGCTAGCTT
CGCTTGCGTCGCAAGTGCTGGCGGCTCTCGAAGACGACGAGCAGCACGGG
TCGACGGCGGAAATCCTCAAGACCGCCATGGATTCGTCAGGCCTAATGTT
CGCCGGCACGTCGTTCGTTCGCGGGGAAGGACAGGCGGGGGCAGGGCCCC
CGGAAGAACCGAGAAACGAGCGGTCATTGTCGGGGGAGGATGCCCCTTAT
GGCGGTGCCGTCCTCGAGGAGGAAAAAGTCGACCTCTGCGACAAGATCTG
GGAGGTCATTCGGGAGGTCACGGCCCCGCTTGATGCCTCGGCGGCGGTCG
ACGCGCCATCTGTTGACGACGCAGAGACCGCTGAACGAACAGAGGACGAG
GAGAGAGACGCCACGGAAGTACGGGCGACATCGGTAGGCGTTGACCCTGA
CGCAGATGGTTCCGCTCGGGCCGTTGAAGAAGAGGGCGGTGGCGCGGAGG
ATCCCCCGTCCCAGCCGCGAAGGTCGACACGAACATGGGCCAAGGGAAGC
GGCTGGGCGAAGGGCTTGGGCTGGACGAAGAATGTCCGTGGTGTTGGTGG
GGCGCGCGACTCTCGCACTTGATGGCGGTAAAGATGCCACCTCCGTTGTA
GTTTTTTTTAACACACTTGAGCAGACCGCCTCTGAGAGGGGGTGTTTGGC
TCTACTTTTCTTTTGAGCTGTTTGCCCTCCCTTGCGTATTTGCCCTATGT
TCTGGATTTTCTCCAATTTTTGGTCTTTTTTCGTTTTTGCGAGTGTTGCG
TGCGGACTCACTCTTTTCTGGGTGTATTTTTTGTTCACGTGTACCTTGCT
AGGGCATAGCCTCTGGCCACGGAAATTTGTATCTCTCCCGTTAGAATACG
TATCGCGGAACAAGAGGTACGGATGTAGGTCGGAATGGTCTATATGTCAC
CTATACGAACAGCGAAACAGGTTATTTGGGGACAGTAGCGTGTGCGTGCC
TTACTGCCTTTTCCGTACTTTTTGTTCAGCCCGGTTAGCTCAAATTCGGC
AGGAACGAAGAATGCCTCCTGCATATCCTCGAACGGTGTAGTATCGTCTC
TCGCTTTGCCCCACGGTGCGACGACAAGGCAATCTCAACGGGCAGTTGGT
TGCGAGCTACGTGCCCGCCGGTGTATGCCTGGCAGCAGTTCCGCGTGGTG
TGACCAGAGCACTCCCCAGGCCAACCCTTGGTTTGTAGACTATACACGGC
GGAGGGTTACCCGCACCTTCCGGTTAGGTTCCGTTCGACAGGAGAATGCG
TGCCAGCAAAGTATTTGGGGACTCGAGGCCCGCAGATGGAAACTTGAGCC
CCGCTGGTACGTTTCGCCCTGGTCTATTTAGGGATGTTTTGGTCATGTAT
GTAGACCAAGTTGCGTTTGGATGGGGTGTAATCTGTGTACTAGTGGGTCT
TGCGACCATCTAGACGACCGCTGTCGCTGTTGTTGTGGAATTTTTCCCGG
AGACCACTGGGCGGTGACGGAGGGTTTGCTGCGGGTGGGACAGGTATCTT
GGCGTTTGACTGACCACATATTGGCTTACGAAGGCAAATGTATTTGGTAG
CCACTCGCTCTTGTTAGTGGTGGAACATTTCCCCAACACTCGAAAGGTCA
TTTTTTGCCTTTCCTTTCTGTGCGTAGATACTTTAGTTGGGACCAACGTT
AACCTTGGCCAGGATTCGTTTCCTCCGGCGTGCCGTGTGTAGTCAGACTC
GCGTACTCTTGAGGTACAGCCACTATCTCGGGTGCCCACTCCAGTGAGTG
TGCACAGAGTTAAATCAACGTGCCCCACCTCTATTGGGCGGCCCATAACA
GCGCGCGGGG

protein sequence of Ec-27_003200.2

>Ec-27_003200.2 ID=Ec-27_003200.2|Name=Ec-27_003200.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=607bp
MEGEVSTPQPESTAKAEADGGSGRWWGGRIPDTVAQASDVGVGERSSVEP
DDGRATEEQDSHVTSAETVAEADGADSNSLRGGVDSVPRRKPANGAPGDD
SKAARKDYARSGKPKWPKGSGRGDVDGSEAKKPGESGGDLESSVKADIQG
AGEFVVPSASEEPIPKVDENAGDDASPTLSATTATLSGVGAVADDSTVGG
AAVVYTNSDGASTAADYRESAMSPASQPQRLTSSPGTKSEESADSDNGSQ
RSGGTATAGDASTAAGEGKGEDNGAKETVEDKTSVGEGVVLKRAAAAAET
ASVGFSEGGAADAAIKGAGSSVGPSAGSFSHGTATGPESGGVVTGGADGA
ANGAAIVSDDDAKRARVKAKLGVAKLQQGEAEKAVSLFEQAALIDPGWWE
VFYYAALEDAEVAKLASLASQVLAALEDDEQHGSTAEILKTAMDSSGLMF
AGTSFVRGEGQAGAGPPEEPRNERSLSGEDAPYGGAVLEEEKVDLCDKIW
EVIREVTAPLDASAAVDAPSVDDAETAERTEDEERDATEVRATSVGVDPD
ADGSARAVEEEGGGAEDPPSQPRRSTRTWAKGSGWAKGLGWTKNVRGVGG
ARDSRT*

mRNA from alignment at chr_27:2806307..2810804-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-27_003200.2 ID=Ec-27_003200.2|Name=Ec-27_003200.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4498bp|location=Sequence derived from alignment at chr_27:2806307..2810804- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTAGCCCAAGTTCATGATTGCCCCCGTCCTCCAGCAGACTCCGCAGTTGT
CGCTCGTGTAAGCGGGGCGACGGTCTCAGAGGTCTTCTTCCCTAATAAAC
ACATCACTGACGCCCGCGTCTCTTACTGCCGAACATGGGTGCCGGTGTTC
GACAGCGTGCTGGAAAAGATCACTCGTTCTTGCGCGGTTTTGAGCCGCGT
ACCGGGTCCATGACTGCCGGTCATGATCCGCAAGACCCTTTGGACACTAT
TACCATCAAATGCCGAGAGGCCCCTCGCATCCCATTCAACATCACGAGTC
GAACACGACACTATCACGTGTGACGCTGGCACTTGTTCTCATCGTTTTTT
TTCTTACAAACGCACAACAATTCATCTCTTTCACATATAAGGTGTTTGTA
TTCTTGTCGTGGGTTGTGGGGAGAGCCGTGTAAACCTCGAACTCAAATCG
TACCTGTGCTGGTTGCCGTTGAAGACGATGGACAAACAGCCACCGGCCTG
CTTCGCTATTGGATCCACCAGCTGTCAAAATGTCGTGTCCTTGTCCCCGC
GAACAACCGGACTCGTCTGTTAAATTCTTCCCCGCTTACCATGGCGTCCC
CGATCGCAACAAACGGACGATAGGGCCAAGCCCAGTGCCGAAGATACAGA
CGGCGAGGACGGGGGCGATGGTGTCAAGGGCTCCCTAGCCAAGGAAGATG
AGAGCATCCAAGATGATGTCGACACGGCAGACAAGGTTACGAGCGACACC
AGCGATGCAGGTGTCAGCGGCAGCAAGAACGGTGCTGAACCCAAGGCGGA
TATGGAAGGAGAGGTCTCGACACCGCAGCCGGAATCGACGGCCAAGGCTG
AAGCCGACGGTGGCAGTGGTCGGTGGTGGGGCGGTCGCATCCCGGACACT
GTCGCCCAGGCGTCCGATGTTGGCGTTGGGGAGCGATCGTCGGTAGAGCC
TGACGATGGTCGTGCGACGGAGGAGCAGGACAGTCACGTGACTTCAGCAG
AAACAGTAGCAGAGGCAGACGGAGCGGACTCGAACAGCCTCCGCGGCGGT
GTGGACTCAGTCCCTCGGCGGAAGCCGGCCAACGGTGCCCCCGGTGATGA
TTCGAAGGCGGCGCGCAAGGACTACGCTAGAAGCGGCAAGCCAAAATGGC
CAAAGGGCAGTGGGCGTGGGGACGTGGATGGTTCTGAAGCGAAGAAGCCG
GGGGAGAGTGGTGGCGATTTGGAGAGCTCGGTCAAGGCCGACATACAAGG
AGCCGGAGAATTTGTGGTACCGTCGGCGTCTGAGGAGCCGATCCCAAAGG
TCGACGAAAACGCCGGAGACGACGCATCGCCCACACTCAGTGCCACGACT
GCGACGTTGTCTGGAGTTGGTGCTGTAGCCGATGATAGCACCGTGGGAGG
AGCTGCCGTTGTCTACACAAACTCCGACGGCGCGTCAACAGCAGCTGATT
ATCGGGAATCGGCCATGTCTCCTGCATCGCAGCCGCAGCGGTTGACCAGT
AGCCCGGGGACAAAGTCGGAGGAATCAGCGGACTCAGACAATGGGTCACA
AAGGAGCGGTGGCACGGCAACGGCAGGTGATGCAAGCACGGCAGCGGGGG
AGGGAAAAGGAGAGGACAACGGCGCAAAAGAAACGGTAGAGGACAAGACG
TCGGTAGGAGAGGGCGTCGTCCTCAAGCGCGCCGCAGCCGCCGCAGAGAC
CGCTAGCGTCGGTTTTTCTGAGGGTGGTGCGGCCGACGCGGCGATCAAAG
GTGCCGGTAGCAGCGTGGGACCCAGTGCGGGTAGTTTTTCCCATGGAACG
GCGACGGGACCGGAGAGCGGCGGTGTTGTGACAGGTGGCGCTGATGGTGC
TGCGAATGGTGCTGCGATCGTTTCCGACGACGACGCCAAGCGCGCGAGAG
TCAAGGCCAAGCTGGGAGTGGCCAAGCTGCAGCAGGGTGAGGCGGAAAAG
GCGGTGTCTCTGTTCGAGCAGGCGGCCCTCATCGACCCAGGGTGGTGGGA
AGTTTTCTACTACGCGGCTCTCGGTAAGTTCGGAGACGCAACCGCACAAG
TAGGTGGCATCCCGGGTCAGTTCATCGACGACAGTTCGAAACCCGGTGGA
ATGGTATGGCGTTTTTGCGCTTTTGTGTTTGCGAAACGTGGCGAAGGAAG
AACTTTGCACGAACATTTGTTTTTTTGCTCAGAAAGCGTCGATATGTTTG
GTCCAAAGACACGGCTGCCCCCCCCGCTTTGCACACCCGCCTTTCTTCGC
AGCTCACGAAACCCTCGGAAACACCGCAGCCGCCGCACACGCTCTTGTAT
CCGCGCTTGGAATCCCTGCCCAAACAGAGGATGCGGAGGTTGCAAAGCTA
GCTTCGCTTGCGTCGCAAGTGCTGGCGGCTCTCGAAGACGACGAGCAGCA
CGTGAGTCTTTTCGTTGCCTTCCTCTTGGATGAGTTTGTGCCAACGTGCT
TGATGGCTACCTGGAAGGTCGCCGCCGCAGCGAAAACAGTCGCAGCGTGT
TTTTTTTGCTGTTGCTGTCTTGACACAACACAACAAACCGTGCAGTGACT
TCCGGAGTATCGTGTTCGGAAACAAGACGACATGGCGGTAACGTAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGGATTTTGGTAGTTGTCCCGACACA
CGCCCGCTCTTGTCAAAACGCACACTAACATGCAGGGGTCGACGGCGGAA
ATCCTCAAGACCGCCATGGATTCGTCAGGCCTAATGTTCGCCGGCACGTC
GTTCGTTCGCGGGGAAGGACAGGCGGGGGCAGGGCCCCCGGAAGAACCGA
GAAACGAGCGGTCATTGTCGGGGGAGGATGCCCCTTATGGCGGTGCCGTC
CTCGAGGAGGAAAAAGTCGACCTCTGCGACAAGATCTGGGAGGTCATTCG
GGAGGTCACGGCCCCGCTTGATGCCTCGGCGGCGGTCGACGCGCCATCTG
TTGACGACGCAGAGACCGCTGAACGAACAGAGGACGAGGAGAGAGACGCC
ACGGAAGTACGGGCGACATCGGTAGGCGTTGACCCTGACGCAGATGGTTC
CGCTCGGGCCGTTGAAGAAGAGGGCGGTGGCGCGGAGGATCCCCCGTCCC
AGCCGCGAAGGTCGACACGAACATGGGCCAAGGGAAGCGGCTGGGCGAAG
GGCTTGGGCTGGACGAAGAATGTCCGTGGTGTTGGTGGGGCGCGCGACTC
TCGCACTTGATGGCGGTAAAGATGCCACCTCCGTTGTAGTTTTTTTTAAC
ACACTTGAGCAGACCGCCTCTGAGAGGGGGTGTTTGGCTCTACTTTTCTT
TTGAGCTGTTTGCCCTCCCTTGCGTATTTGCCCTATGTTCTGGATTTTCT
CCAATTTTTGGTCTTTTTTCGTTTTTGCGAGTGTTGCGTGCGGACTCACT
CTTTTCTGGGTGTATTTTTTGTTCACGTGTACCTTGCTAGGGCATAGCCT
CTGGCCACGGAAATTTGTATCTCTCCCGTTAGAATACGTATCGCGGAACA
AGAGGTACGGATGTAGGTCGGAATGGTCTATATGTCACCTATACGAACAG
CGAAACAGGTTATTTGGGGACAGTAGCGTGTGCGTGCCTTACTGCCTTTT
CCGTACTTTTTGTTCAGCCCGGTTAGCTCAAATTCGGCAGGAACGAAGAA
TGCCTCCTGCATATCCTCGAACGGTGTAGTATCGTCTCTCGCTTTGCCCC
ACGGTGCGACGACAAGGCAATCTCAACGGGCAGTTGGTTGCGAGCTACGT
GCCCGCCGGTGTATGCCTGGCAGCAGTTCCGCGTGGTGTGACCAGAGCAC
TCCCCAGGCCAACCCTTGGTTTGTAGACTATACACGGCGGAGGGTTACCC
GCACCTTCCGGTTAGGTTCCGTTCGACAGGAGAATGCGTGCCAGCAAAGT
ATTTGGGGACTCGAGGCCCGCAGATGGAAACTTGAGCCCCGCTGGTACGT
TTCGCCCTGGTCTATTTAGGGATGTTTTGGTCATGTATGTAGACCAAGTT
GCGTTTGGATGGGGTGTAATCTGTGTACTAGTGGGTCTTGCGACCATCTA
GACGACCGCTGTCGCTGTTGTTGTGGAATTTTTCCCGGAGACCACTGGGC
GGTGACGGAGGGTTTGCTGCGGGTGGGACAGGTATCTTGGCGTTTGACTG
ACCACATATTGGCTTACGAAGGCAAATGTATTTGGTAGCCACTCGCTCTT
GTTAGTGGTGGAACATTTCCCCAACACTCGAAAGGTCATTTTTTGCCTTT
CCTTTCTGTGCGTAGATACTTTAGTTGGGACCAACGTTAACCTTGGCCAG
GATTCGTTTCCTCCGGCGTGCCGTGTGTAGTCAGACTCGCGTACTCTTGA
GGTACAGCCACTATCTCGGGTGCCCACTCCAGTGAGTGTGCACAGAGTTA
AATCAACGTGCCCCACCTCTATTGGGCGGCCCATAACAGCGCGCGGGG

Coding sequence (CDS) from alignment at chr_27:2806307..2810804-

>Ec-27_003200.2 ID=Ec-27_003200.2|Name=Ec-27_003200.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1821bp|location=Sequence derived from alignment at chr_27:2806307..2810804- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAGGAGAGGTCTCGACACCGCAGCCGGAATCGACGGCCAAGGCTGA
AGCCGACGGTGGCAGTGGTCGGTGGTGGGGCGGTCGCATCCCGGACACTG
TCGCCCAGGCGTCCGATGTTGGCGTTGGGGAGCGATCGTCGGTAGAGCCT
GACGATGGTCGTGCGACGGAGGAGCAGGACAGTCACGTGACTTCAGCAGA
AACAGTAGCAGAGGCAGACGGAGCGGACTCGAACAGCCTCCGCGGCGGTG
TGGACTCAGTCCCTCGGCGGAAGCCGGCCAACGGTGCCCCCGGTGATGAT
TCGAAGGCGGCGCGCAAGGACTACGCTAGAAGCGGCAAGCCAAAATGGCC
AAAGGGCAGTGGGCGTGGGGACGTGGATGGTTCTGAAGCGAAGAAGCCGG
GGGAGAGTGGTGGCGATTTGGAGAGCTCGGTCAAGGCCGACATACAAGGA
GCCGGAGAATTTGTGGTACCGTCGGCGTCTGAGGAGCCGATCCCAAAGGT
CGACGAAAACGCCGGAGACGACGCATCGCCCACACTCAGTGCCACGACTG
CGACGTTGTCTGGAGTTGGTGCTGTAGCCGATGATAGCACCGTGGGAGGA
GCTGCCGTTGTCTACACAAACTCCGACGGCGCGTCAACAGCAGCTGATTA
TCGGGAATCGGCCATGTCTCCTGCATCGCAGCCGCAGCGGTTGACCAGTA
GCCCGGGGACAAAGTCGGAGGAATCAGCGGACTCAGACAATGGGTCACAA
AGGAGCGGTGGCACGGCAACGGCAGGTGATGCAAGCACGGCAGCGGGGGA
GGGAAAAGGAGAGGACAACGGCGCAAAAGAAACGGTAGAGGACAAGACGT
CGGTAGGAGAGGGCGTCGTCCTCAAGCGCGCCGCAGCCGCCGCAGAGACC
GCTAGCGTCGGTTTTTCTGAGGGTGGTGCGGCCGACGCGGCGATCAAAGG
TGCCGGTAGCAGCGTGGGACCCAGTGCGGGTAGTTTTTCCCATGGAACGG
CGACGGGACCGGAGAGCGGCGGTGTTGTGACAGGTGGCGCTGATGGTGCT
GCGAATGGTGCTGCGATCGTTTCCGACGACGACGCCAAGCGCGCGAGAGT
CAAGGCCAAGCTGGGAGTGGCCAAGCTGCAGCAGGGTGAGGCGGAAAAGG
CGGTGTCTCTGTTCGAGCAGGCGGCCCTCATCGACCCAGGGTGGTGGGAA
GTTTTCTACTACGCGGCTCTCGAGGATGCGGAGGTTGCAAAGCTAGCTTC
GCTTGCGTCGCAAGTGCTGGCGGCTCTCGAAGACGACGAGCAGCACGGGT
CGACGGCGGAAATCCTCAAGACCGCCATGGATTCGTCAGGCCTAATGTTC
GCCGGCACGTCGTTCGTTCGCGGGGAAGGACAGGCGGGGGCAGGGCCCCC
GGAAGAACCGAGAAACGAGCGGTCATTGTCGGGGGAGGATGCCCCTTATG
GCGGTGCCGTCCTCGAGGAGGAAAAAGTCGACCTCTGCGACAAGATCTGG
GAGGTCATTCGGGAGGTCACGGCCCCGCTTGATGCCTCGGCGGCGGTCGA
CGCGCCATCTGTTGACGACGCAGAGACCGCTGAACGAACAGAGGACGAGG
AGAGAGACGCCACGGAAGTACGGGCGACATCGGTAGGCGTTGACCCTGAC
GCAGATGGTTCCGCTCGGGCCGTTGAAGAAGAGGGCGGTGGCGCGGAGGA
TCCCCCGTCCCAGCCGCGAAGGTCGACACGAACATGGGCCAAGGGAAGCG
GCTGGGCGAAGGGCTTGGGCTGGACGAAGAATGTCCGTGGTGTTGGTGGG
GCGCGCGACTCTCGCACTTGA

Synonyms

The feature 'Ec-27_003200.2' has the following synonyms


Synonym
Esi0000_0573
Esi_0000_0573