Ec-27_002570.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_002570.1
Unique NameEc-27_002570.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length85
Homology
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BLAST of Ec-27_002570.1 vs. uniprot
Match: D8LBV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV3_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.600e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MDGAPTVFMFLLFRVSPWALWRGGDFEPFPYLKPPSPLCTVFSFRRREEGSFISVRRVLSVSAKTQRSRLTARVSVDVRFSQCD 252
            MDGAPTVFMFLLFRVSPWALWRGGDFEPFPYLKPPSPLCTVFSFRRREEGSFISVRRVLSVSAKTQRSRLTARVSVDVRFSQCD
Sbjct:    1 MDGAPTVFMFLLFRVSPWALWRGGDFEPFPYLKPPSPLCTVFSFRRREEGSFISVRRVLSVSAKTQRSRLTARVSVDVRFSQCD 84
The following BLAST results are available for this feature:
BLAST of Ec-27_002570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBV3_ECTSI2.600e-55100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:2282865..2283119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length255
Hectar predicted targeting categoryother localisation
Gene idEc-27_002570.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_002570Ec-27_002570Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 2282865..2283119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002570.1.1Ec-27_002570.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2282865..2283119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002570.1CDS:Ec-27_002570.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 2282865..2283119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002570.1Ec-27_002570.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 2282865..2283119 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_002570.1 ID=Ec-27_002570.1|Name=Ec-27_002570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=85bp
MDGAPTVFMFLLFRVSPWALWRGGDFEPFPYLKPPSPLCTVFSFRRREEG
SFISVRRVLSVSAKTQRSRLTARVSVDVRFSQCD*
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spliced messenger RNA

>Ec-27_002570.1 ID=Ec-27_002570.1|Name=Ec-27_002570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=255bp|location=Sequence derived from alignment at chr_27:2282865..2283119+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGGAGCACCAACAGTCTTCATGTTTCTACTATTTAGAGTGAGTCC
CTGGGCCTTGTGGAGGGGTGGAGACTTCGAGCCTTTCCCCTATCTTAAGC
CACCATCCCCCCTCTGTACCGTCTTCTCCTTCCGGCGGAGGGAGGAGGGC
AGCTTCATCTCGGTTCGTCGTGTTCTCTCTGTGTCCGCCAAGACCCAGCG
CTCACGACTGACAGCGAGAGTCTCAGTAGATGTTAGATTCAGCCAGTGTG
ACTGA
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protein sequence of Ec-27_002570.1

>Ec-27_002570.1 ID=Ec-27_002570.1|Name=Ec-27_002570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=85bp
MDGAPTVFMFLLFRVSPWALWRGGDFEPFPYLKPPSPLCTVFSFRRREEG
SFISVRRVLSVSAKTQRSRLTARVSVDVRFSQCD*
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mRNA from alignment at chr_27:2282865..2283119+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_002570.1 ID=Ec-27_002570.1|Name=Ec-27_002570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=255bp|location=Sequence derived from alignment at chr_27:2282865..2283119+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGGAGCACCAACAGTCTTCATGTTTCTACTATTTAGAGTGAGTCC
CTGGGCCTTGTGGAGGGGTGGAGACTTCGAGCCTTTCCCCTATCTTAAGC
CACCATCCCCCCTCTGTACCGTCTTCTCCTTCCGGCGGAGGGAGGAGGGC
AGCTTCATCTCGGTTCGTCGTGTTCTCTCTGTGTCCGCCAAGACCCAGCG
CTCACGACTGACAGCGAGAGTCTCAGTAGATGTTAGATTCAGCCAGTGTG
ACTGA
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Coding sequence (CDS) from alignment at chr_27:2282865..2283119+

>Ec-27_002570.1 ID=Ec-27_002570.1|Name=Ec-27_002570.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=255bp|location=Sequence derived from alignment at chr_27:2282865..2283119+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGGAGCACCAACAGTCTTCATGTTTCTACTATTTAGAGTGAGTCC
CTGGGCCTTGTGGAGGGGTGGAGACTTCGAGCCTTTCCCCTATCTTAAGC
CACCATCCCCCCTCTGTACCGTCTTCTCCTTCCGGCGGAGGGAGGAGGGC
AGCTTCATCTCGGTTCGTCGTGTTCTCTCTGTGTCCGCCAAGACCCAGCG
CTCACGACTGACAGCGAGAGTCTCAGTAGATGTTAGATTCAGCCAGTGTG
ACTGA
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Synonyms
The feature 'Ec-27_002570.1' has the following synonyms
Synonym
Esi0000_0662
Esi_0000_0662