Ec-27_002520.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_002520.1
Unique NameEc-27_002520.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length166
Homology
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BLAST of Ec-27_002520.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 2.130e-115
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 
Query:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 495
            MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of Ec-27_002520.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 3.190e-92
Identity = 140/165 (84.85%), Postives = 141/165 (85.45%), Query Frame = 1 
Query:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 495
            MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSD EEKNDCGKEEEKDEGKWDMLTDVYGRAYWQH+VTGEWAYVYGGGLSAPPVVAV PTPM  PHGVVFTPP         PLPTK           EKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDNEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHNVTGEWAYVYGGGLSAPPVVAVSPTPMACPHGVVFTPPXXXXXXXXXPLPTKXXXXXXXXXXXEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of Ec-27_002520.1 vs. uniprot
Match: D8LLF3_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF3_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.270e-55
Identity = 104/172 (60.47%), Postives = 115/172 (66.86%), Query Frame = 1 
Query:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPV-------YAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 495
            MSFF++GFA + NNRR K AKKA    ADK+ +SSDK EK        KDEG+WDMLTD YGR YWQHS+TGEW Y  GGGL +P V  V P+PM  P G VFTP PV       +A AP+P    KK            GKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFSNGFAVLANNRRRKEAKKAAKNGADKSAQSSDKMEK--------KDEGRWDMLTDAYGRTYWQHSITGEWTYGCGGGLVSP-VGTVNPSPMGYPGGPVFTPSPVPGGALYPFAVAPHP----KKXXXXXXXXXXXXGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 159
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BLAST of Ec-27_002520.1 vs. uniprot
Match: A0A6H5KRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.440e-49
Identity = 84/106 (79.25%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:  199 QHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKDG-------DKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 495
            QHSVTGEWAYVYGGGLSAPPVVAV PT +V PHGVV  P  VYAAAPNPPLP KKKD        D++DEKKEKGKGWWETK D+DGDRYWEHTVTKK TYKDPYY
Sbjct:   17 QHSVTGEWAYVYGGGLSAPPVVAVSPTSVVYPHGVVVMPXXVYAAAPNPPLPAKKKDVAGGQKDCDEKDEKKEKGKGWWETKSDKDGDRYWEHTVTKKITYKDPYY 122
[Close]
BLAST of Ec-27_002520.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 9.430e-48
Identity = 98/169 (57.99%), Postives = 107/169 (63.31%), Query Frame = 1 
Query:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPL----PTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 495
            MSFFT G A + NN   KA KK   K +DK              K+++KDEG W+ LTDVYGR YWQHS TGEW + YGGG   PPV  V P+PM  P G VFTP PV      P      P KKK      EKKEKGKGWWETKYDE+GDRYWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFTKGLAGIFNNG--KARKKDEGKGSDK--------------KKDKKDEGSWEKLTDVYGRTYWQHSKTGEWHFGYGGGF-VPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKKK------EKKEKGKGWWETKYDEEGDRYWEHTVTKKTTYKDPYY 146
The following BLAST results are available for this feature:
BLAST of Ec-27_002520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLG2_ECTSI2.130e-115100.00WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI3.190e-9284.85WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LLF3_ECTSI1.270e-5560.47WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A6H5KRF5_9PHAE5.440e-4979.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLF4_ECTSI9.430e-4857.99WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:2241596..2242862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length498
Hectar predicted targeting categoryother localisation
Gene idEc-27_002520.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_002520Ec-27_002520Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 2241596..2242862 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002520.1.1Ec-27_002520.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2241596..2241674 +
Ec-27_002520.1.2Ec-27_002520.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2241858..2241975 +
Ec-27_002520.1.3Ec-27_002520.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2242562..2242862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002520.1CDS:Ec-27_002520.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 2241596..2241674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002520.1Ec-27_002520.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 2241596..2242862 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_002520.1 ID=Ec-27_002520.1|Name=Ec-27_002520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=166bp
MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKD
EGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHG
VVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYW
EHTVTKKTTYKDPYY*
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spliced messenger RNA

>Ec-27_002520.1 ID=Ec-27_002520.1|Name=Ec-27_002520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=498bp|location=Sequence derived from alignment at chr_27:2241596..2242862+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCTTCACGAGCGGTTTCGCGACCATGGTGAACAACAGGCGCCT
GAAGGCGGCGAAGAAGGCAGGCACGAAAAACGCAGACAAGAACGTGGAGA
GCTCTGATAAGGAGGAAAAGAACGACTGTGGCAAGGAGGAAGAGAAAGAC
GAGGGAAAGTGGGACATGCTCACAGATGTTTACGGCCGGGCATACTGGCA
GCACAGCGTGACGGGCGAGTGGGCCTACGTCTACGGTGGCGGCCTCAGCG
CCCCTCCCGTTGTGGCGGTCGGCCCTACACCCATGGTCTCTCCCCACGGC
GTGGTCTTCACGCCTCCGCCTGTCTACGCCGCCGCCCCCAACCCGCCCCT
CCCCACCAAGAAGAAGGACGGCGACAAACAGGACGAGAAGAAGGAGAAGG
GCAAGGGGTGGTGGGAGACGAAGTACGACGAGGACGGGGACCGGTACTGG
GAGCACACGGTGACCAAGAAGACCACCTACAAGGACCCCTACTACTGA
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protein sequence of Ec-27_002520.1

>Ec-27_002520.1 ID=Ec-27_002520.1|Name=Ec-27_002520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=166bp
MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKD
EGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHG
VVFTPPPVYAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYW
EHTVTKKTTYKDPYY*
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mRNA from alignment at chr_27:2241596..2242862+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_002520.1 ID=Ec-27_002520.1|Name=Ec-27_002520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1267bp|location=Sequence derived from alignment at chr_27:2241596..2242862+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGTTCTTCACGAGCGGTTTCGCGACCATGGTGAACAACAGGCGCCT
GAAGGCGGCGAAGAAGGCAGGCACGAAAAGTGAGTAGTCGGCCTGTGGTG
CATGCATGTCATCGTGGAGGCTGTTGCCTCTAGCGTTTAGCTGTGCTGCT
GCGGCCGGCTTCACCCACGCGTTGAACCAAAACAGGCCGCTGGTTCTCCC
CAACAGCTCACGCTCACCTTCTTTGTGTCTTCTCCTCTTCCTCTCCCATC
ATGCCTGCACAGACGCAGACAAGAACGTGGAGAGCTCTGATAAGGAGGAA
AAGAACGACTGTGGCAAGGAGGAAGAGAAAGACGAGGGAAAGTGGGACAT
GCTCACAGATGTTTACGGCCGGGCATACTGGTGAGAGGGATTCCAGAAGC
ACGGCAGTCTACCGTCCATGTCTACATGTAGACTTACAACGGAGGCTACA
CATGTTAGAAAACCGTTTTGGATATTAACTACATTGCTCGTGTGCAGGAG
AGGAAGATCCACACATACCACAATTCATGTAGATACACCGTATAGAGAAA
TGGATCGTTGGACGCGTCTCACATGGATTGGATGGCTGCTTTGTTTTTCG
CCACCGCCGTTGTACAGTGTACGTGTACAGTAGTACTCAACGTTGTAACA
CGTGTGCTTCCACTTGTTTGCCTTCCTTTTCAAGCCCGAGCTTGTTCTAA
TCCCCACTAGTGTACAGTATGCACACGTCACTTACTTCATCTCATCAGCG
TGAGATGGCAACAATCAGATTCCATGTCCTAACGTCCCGAACTCGTACAC
GTTCTAGACTAATTGCAGTCTACATACAAATCATGTGTGCAGAGAGCGTA
CAGCAGCTTTGTCCAGACGTCTTGCCTCTTCTCACACTCGCTCGCATCCA
GCAATCAACACCATTTTCCCTGAAACTCGCATTGCATATTCTCCGAAATC
CAACAACAACCAACAGGCAGCACAGCGTGACGGGCGAGTGGGCCTACGTC
TACGGTGGCGGCCTCAGCGCCCCTCCCGTTGTGGCGGTCGGCCCTACACC
CATGGTCTCTCCCCACGGCGTGGTCTTCACGCCTCCGCCTGTCTACGCCG
CCGCCCCCAACCCGCCCCTCCCCACCAAGAAGAAGGACGGCGACAAACAG
GACGAGAAGAAGGAGAAGGGCAAGGGGTGGTGGGAGACGAAGTACGACGA
GGACGGGGACCGGTACTGGGAGCACACGGTGACCAAGAAGACCACCTACA
AGGACCCCTACTACTGA
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Coding sequence (CDS) from alignment at chr_27:2241596..2242862+

>Ec-27_002520.1 ID=Ec-27_002520.1|Name=Ec-27_002520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=498bp|location=Sequence derived from alignment at chr_27:2241596..2242862+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGTTCTTCACGAGCGGTTTCGCGACCATGGTGAACAACAGGCGCCT
GAAGGCGGCGAAGAAGGCAGGCACGAAAAACGCAGACAAGAACGTGGAGA
GCTCTGATAAGGAGGAAAAGAACGACTGTGGCAAGGAGGAAGAGAAAGAC
GAGGGAAAGTGGGACATGCTCACAGATGTTTACGGCCGGGCATACTGGCA
GCACAGCGTGACGGGCGAGTGGGCCTACGTCTACGGTGGCGGCCTCAGCG
CCCCTCCCGTTGTGGCGGTCGGCCCTACACCCATGGTCTCTCCCCACGGC
GTGGTCTTCACGCCTCCGCCTGTCTACGCCGCCGCCCCCAACCCGCCCCT
CCCCACCAAGAAGAAGGACGGCGACAAACAGGACGAGAAGAAGGAGAAGG
GCAAGGGGTGGTGGGAGACGAAGTACGACGAGGACGGGGACCGGTACTGG
GAGCACACGGTGACCAAGAAGACCACCTACAAGGACCCCTACTACTGA
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Synonyms
The feature 'Ec-27_002520.1' has the following synonyms
Synonym
Esi0036_0150
Esi_0036_0150