Ec-27_002410.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_002410.2
Unique NameEc-27_002410.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length716
Homology
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BLAST of Ec-27_002410.2 vs. uniprot
Match: D8LLF1_ECTSI (Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF1_ECTSI)

HSP 1 Score: 992 bits (2564), Expect = 0.000e+0
Identity = 625/628 (99.52%), Postives = 625/628 (99.52%), Query Frame = 1 
Query:  490 GAGAIHEPQSFDHLRVPAKPSASSTRIVDAAANQHHLGAXXXXXXXXXLASARKRVGAAEQTRGIQMGPLRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGXXXXXXXXXXXXXXPTNRSSPTSXXXXXXRRPRSPSLARSPTAAGAGRSSPPLHLSRIPRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGXXXXXXXXXXXXXXXXXXXXXXXXAEGDGNGGAAAPVDGPSPMSLLSNTLSAIGLAVGVNSCGKPPRSPRASKGSPRLSVSGSGSSPRVSXXXXXXXXXXSRTSPFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVTRQSLESRLADAAAASSSLAAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPSSVVSEEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKELQGRTSTLEQEKVNLTLALAPLEERLQAKERAWESERRELVSRSEANLRSARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRLIEAEKVASR 2373
            GAGAIHEPQSFDHLRVPAKPSASSTRIVDAAANQHHLGAXXXXXXXXXLASARKRVGAAEQTRGIQMGPLRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGXXXXXXXXXXXXXXPTNRSSPTSXXXXXXRRPRSPSLARSPTAAGAGRSSPPLHLSRIPRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGXXXXXXXXXXXXXXXXXXXXXXXXAEGDGNGGAAAPVDGPSPMSLLSNTLSAIGLAVGVNSCGKPPRSPRASKGSPRLSVSGSGSSPRVSXXXXXXXXXXSRTSPFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVTRQSLESRLADAAAASSSLAAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPSSVVSEEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKELQGRTSTLEQEKVNLTLALAPLEERLQAKERAWESERRELVSRSEANLRSARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRLIEAEK   R
Sbjct:   82 GAGAIHEPQSFDHLRVPAKPSASSTRIVDAAANQHHLGAXXXXXXXXXLASARKRVGAAEQTRGIQMGPLRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGXXXXXXXXXXXXXXPTNRSSPTSXXXXXXRRPRSPSLARSPTAAGAGRSSPPLHLSRIPRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGXXXXXXXXXXXXXXXXXXXXXXXXAEGDGNGGAAAPVDGPSPMSLLSNTLSAIGLAVGVNSCGKPPRSPRASKGSPRLSVSGSGSSPRVSXXXXXXXXXXSRTSPFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVTRQSLESRLADAAAASSSLAAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPSSVVSEEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKELQGRTSTLEQEKVNLTLALAPLEERLQAKERAWESERRELVSRSEANLRSARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRLIEAEKEKER 709
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BLAST of Ec-27_002410.2 vs. uniprot
Match: A0A6H5KIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW8_9PHAE)

HSP 1 Score: 604 bits (1558), Expect = 3.450e-206
Identity = 398/494 (80.57%), Postives = 402/494 (81.38%), Query Frame = 1 
Query:  490 GAGAIHEPQSFDHLRVPAKPSASSTRIVDAAANQHHLGAXXXXXXXXXL-ASARKRVGAAEQTRGIQMGPLRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGXXXXXXXXXXXXXX-PTNRSSPTSXXXXXXRRPRSPSLARSPTAAGAGRSSPPLHLSRIPRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGXXXXXXXXXXXXXXXXXXXXXXXXAEGDGNGGAAAPVDGPSPMSLLSNTLSAIGLAVGVNSCGKPPRSPRASKGSPRLSVSGSGSSPRVSXXXXXXXXXXSRTSPFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVTRQSLESRLADAAAASSSLAAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPS-----------SVVSEEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKELQGRTSTLEQEK 1932
            GAGAIHEPQSFDHLRVPAKPS SSTR+VDAA        XXXXXXXXX  ASARKRVGAAEQTRGIQMGPLRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGXXXXXXXXXXXX   PTNRSSP  XXXXXX RPR                    H SRIPRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAG     XXXX               A       AAAPVDGPSPMSLLSNTLSAIGLAVGV   GKPPRSPRASKGSPRLSVSGSGSSPRVS          SRTSPFFDTSGSGGGCEGLPRMLEEDEEEDFPLGV RQSLESRLADAAAASS+LAAVAHRAS+ENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGE             SVVSEEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAG+NGFSVEVRDRLKELQGRTSTLEQEK
Sbjct:   88 GAGAIHEPQSFDHLRVPAKPSTSSTRVVDAAXXXXXXXXXXXXXXXXXXXASARKRVGAAEQTRGIQMGPLRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGXXXXXXXXXXXXASSPTNRSSPXXXXXXXXXRPRXXXXXXXXXXXXXXXXXXXXHPSRIPRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGGNGEDXXXXEATFMENDNGDHDGGAXXXXXXXAAAPVDGPSPMSLLSNTLSAIGLAVGV---GKPPRSPRASKGSPRLSVSGSGSSPRVSPWSSPRAAARSRTSPFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVARQSLESRLADAAAASSNLAAVAHRASVENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEVGDPAGAWDGGGCSVVSEEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGDNGFSVEVRDRLKELQGRTSTLEQEK 578
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BLAST of Ec-27_002410.2 vs. uniprot
Match: A0A6H5KIL1_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL1_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.680e-59
Identity = 131/154 (85.06%), Postives = 132/154 (85.71%), Query Frame = 1 
Query: 1933 VNLTLALAPLEERLQAKERAWESERRELVSRSEANLRSARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRLIEAEKVASRVLTAEEG 2394
            VNLTLALAPLEERLQAKERAWESERRELVSRSEANLR  RVAEDRCR                   LRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVV LGKEK+ELEAGLMPIQSENSSLKFRLIEAEKVASRVLTAEEG
Sbjct:   11 VNLTLALAPLEERLQAKERAWESERRELVSRSEANLRRMRVAEDRCRXXXXXXXXXXXXXXXXXXXLRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVNLGKEKTELEAGLMPIQSENSSLKFRLIEAEKVASRVLTAEEG 164
[Close]
BLAST of Ec-27_002410.2 vs. uniprot
Match: A0A1Z5JUC8_FISSO (Kinesin-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUC8_FISSO)

HSP 1 Score: 63.5 bits (153), Expect = 1.420e-6
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 1 
Query: 1870 VEVRDRLKELQGRTSTLEQEKVNLTLALAPLEERLQAKERAWESERRELVSRSEANLRSARVAEDRCREVERRKSEMEEE-RHSLDAELRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSS 2331
              ++ RL+E++ R   LEQEK+ L++A APLE RL+ KE  WE E   L+   +    S+R AEDR R++  +   +EEE +H     L+         ES+ A S W R V  D++   L+  L  AE ++ +L   K  +E  L   + E SS
Sbjct:  185 ASLKSRLREMKQRVDQLEQEKMVLSMAKAPLEARLRQKEDEWEKESNRLLDEIDTLRESSRSAEDRYRDLVLKHEALEEECKHLRHQVLKASSSRNAGLESRVADSGWSRMVQNDQDILDLKEKLRSAEEEIDSLRLAKVSVEKELHAFKIELSS 339
The following BLAST results are available for this feature:
BLAST of Ec-27_002410.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLF1_ECTSI0.000e+099.52Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 ... [more]
A0A6H5KIW8_9PHAE3.450e-20680.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIL1_9PHAE3.680e-5985.06Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A1Z5JUC8_FISSO1.420e-634.84Kinesin-like protein n=2 Tax=Fistulifera solaris T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:2157980..2164225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1008.8
Seed ortholog evalue1.2e-291
Seed eggNOG ortholog2880.D8LLF1
Length2395
KEGG koko:K10405
Hectar predicted targeting categoryother localisation
Gene idEc-27_002410.2
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_002410Ec-27_002410Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 2147204..2164225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002410.2Ec-27_002410.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 2157980..2163978 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002410.2.6Ec-27_002410.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2157980..2158012 -
Ec-27_002410.2.5Ec-27_002410.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2159126..2159227 -
Ec-27_002410.2.4Ec-27_002410.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2160074..2160400 -
Ec-27_002410.2.3Ec-27_002410.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2160918..2161121 -
Ec-27_002410.2.2Ec-27_002410.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2161952..2162155 -
Ec-27_002410.2.1Ec-27_002410.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2162701..2164225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002410.2CDS:Ec-27_002410.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 2157980..2158012 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0024105UTR:Ec-27_002410.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 2163979..2164225 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_002410.2 ID=Ec-27_002410.2|Name=Ec-27_002410.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=716bp
MMSSAAFERSLRGGASSSSSSMATSSSSSSTSSLRPPKKKSVTWDDDEVL
PDDSGGESGVLRNSSIACTNTNNGGVAAAAAGAGAIHEPQSFDHLRVPAK
PSASSTRIVDAAANQHHLGAGSAGGGGGLLASARKRVGAAEQTRGIQMGP
LRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGGGTAAAAA
AAVASSPTNRSSPTSAAGAAARRPRSPSLARSPTAAGAGRSSPPLHLSRI
PRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGGNGE
DDDDAEATFMEDNNGDHGGGAEGDGNGGAAAPVDGPSPMSLLSNTLSAIG
LAVGVNSCGKPPRSPRASKGSPRLSVSGSGSSPRVSPRSSPRAAPRSRTS
PFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVTRQSLESRLADAAAASSSL
AAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPSSVVS
EEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKE
LQGRTSTLEQEKVNLTLALAPLEERLQAKERAWESERRELVSRSEANLRS
ARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQR
TVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRL
IEAEKVASRVLTAEEG
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spliced messenger RNA

>Ec-27_002410.2 ID=Ec-27_002410.2|Name=Ec-27_002410.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2395bp|location=Sequence derived from alignment at chr_27:2157980..2164225- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTCGCCCCCAAAATACCGTTGCGCGAAACAAGTCCAAAGACGCGCGAAGC
CTTCAGGTCAAGAGCGGGGCTGAGGACACAGCACGCACCGCGCAAGGGAG
GTTTTGGTCTCCAAGGGGTGCAGGGAAGTCCTGGCACGCTGGTGTAGGCA
GGTTCGTTGAGACTTCACCCTCTGCAAGCACAGAGAAACCCTACAGCAGT
CGCGCGTGTGTCGCCCTCGGGAATCTGCCCGTTGGTACATTCGCAGTATG
ATGTCTTCGGCGGCGTTCGAGCGCTCCTTGAGAGGGGGGGCATCATCTTC
GTCCTCGTCGATGGCTACCTCCTCCTCCTCCTCCTCGACATCCTCGCTGA
GGCCCCCCAAGAAGAAGAGCGTCACGTGGGACGACGACGAGGTGCTTCCG
GACGACAGCGGCGGCGAATCCGGCGTGCTTCGGAACAGTAGCATCGCCTG
CACCAACACCAACAACGGGGGTGTAGCAGCAGCAGCAGCCGGGGCAGGTG
CAATCCACGAGCCGCAGAGCTTCGACCACCTCCGAGTGCCGGCCAAGCCT
TCGGCGAGCAGCACCCGAATCGTCGACGCGGCCGCGAACCAACACCACCT
CGGCGCGGGCTCGGCTGGCGGCGGCGGCGGCCTGTTAGCCTCCGCCCGCA
AGAGGGTGGGAGCGGCGGAGCAGACGCGAGGCATCCAGATGGGGCCCCTA
CGAGTGCGGACCCCGGCCAAACCCAAGCGGTCTCGCGCGGACGCGACGCC
CTTCCACGCCCCGTCCTCTTCTTCCGTTCCCGCTCCCAGCGCGGGCGCCA
CACACAACTACCTCCGGCGCGGCGGCGGCACGGCGGCGGCGGCAGCCGCA
GCGGTCGCGTCGTCGCCGACTAATAGATCGTCTCCTACTTCCGCCGCCGG
TGCCGCTGCCCGCCGCCCGAGGAGTCCAAGCCTGGCAAGGTCGCCTACTG
CCGCCGGTGCTGGCAGATCATCTCCCCCGCTCCATCTAAGTAGAATCCCT
CGCGCCGCCGAGCCGACTGCTGCCAGGCCCGGCGCGGCGGCTACACCCGG
GGCCGCAGGCAGCACCAGGAATCGCAGCAGCCCCCGTCGGCAGAGGCACA
TGTCCTCGAGCCAAGCGCTACGCAACGTCGCCGGGGGCAACGGCGAAGAC
GACGACGACGCCGAGGCTACCTTCATGGAGGACAACAACGGAGATCACGG
CGGGGGTGCGGAGGGAGACGGCAACGGCGGTGCGGCGGCCCCTGTGGACG
GCCCATCCCCGATGTCTCTCCTGTCGAACACTCTCTCAGCAATCGGCCTC
GCGGTCGGGGTAAATTCCTGCGGAAAGCCACCCAGGTCGCCCAGGGCTAG
CAAGGGCTCCCCCAGGCTCAGCGTTAGCGGTAGCGGCAGTTCCCCGAGGG
TTTCTCCGAGGAGCTCTCCGAGAGCTGCTCCGAGAAGCCGCACGTCGCCG
TTTTTCGACACTTCCGGGAGCGGCGGCGGCTGCGAGGGCCTCCCGCGTAT
GCTGGAAGAAGACGAGGAAGAAGACTTCCCCCTGGGCGTGACTCGGCAAT
CTCTGGAGAGCCGATTGGCGGACGCGGCGGCCGCGAGCTCGAGCCTGGCG
GCCGTCGCTCACAGGGCCTCCTTGGAAAACATGCAGAACAACAGCCCGGC
TACCTCGCTGAGCCCTTTCACCAAGAGCAGCACCACAGTCAGGCGGACCT
CGACTAGCCGCTACAACGTCAACGGCGAGCCGAGCTCCGTGGTGTCGGAG
GAGGTCAGCGAAGAGTCGTCGGTCACGGTAACCTCCGCCGCCTGCGGGTG
CCACCACCAGCATGGCTGCGCCATCGGGGCCATCGGCGGGCAGATGCCGG
CGGGCGAGAACGGTTTCTCGGTCGAGGTCCGGGACCGGCTGAAGGAGCTT
CAGGGGAGGACGTCCACGCTGGAGCAGGAGAAGGTCAACCTCACGCTGGC
CCTGGCGCCGCTCGAGGAGAGGCTGCAGGCGAAGGAGAGGGCGTGGGAGT
CGGAGCGGCGCGAGCTCGTGTCGAGGTCGGAGGCGAACCTGAGGAGCGCG
AGGGTCGCGGAGGACAGGTGCCGCGAGGTGGAGAGGCGCAAGTCCGAGAT
GGAGGAGGAAAGGCACTCGCTGGACGCGGAGCTTCGGCGGCTGAGGGGGG
AGATCGAGCAGAGGGAGAGCAAGACGGCGGCCAGCTTCTGGCAGAGGACG
GTGGCGGCCGACAGGGAGAAGACGCGCCTGGAGAACGCCCTAGACCAAGC
CGAGGCAAAGGTGGTGACCTTGGGTAAGGAAAAATCCGAGCTTGAGGCAG
GGTTGATGCCCATCCAGTCCGAGAACAGCTCTCTCAAGTTCCGGCTCATC
GAGGCAGAAAAGGTGGCATCGCGCGTCCTCACCGCTGAGGAGGGC
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protein sequence of Ec-27_002410.2

>Ec-27_002410.2 ID=Ec-27_002410.2|Name=Ec-27_002410.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=716bp
MMSSAAFERSLRGGASSSSSSMATSSSSSSTSSLRPPKKKSVTWDDDEVL
PDDSGGESGVLRNSSIACTNTNNGGVAAAAAGAGAIHEPQSFDHLRVPAK
PSASSTRIVDAAANQHHLGAGSAGGGGGLLASARKRVGAAEQTRGIQMGP
LRVRTPAKPKRSRADATPFHAPSSSSVPAPSAGATHNYLRRGGGTAAAAA
AAVASSPTNRSSPTSAAGAAARRPRSPSLARSPTAAGAGRSSPPLHLSRI
PRAAEPTAARPGAAATPGAAGSTRNRSSPRRQRHMSSSQALRNVAGGNGE
DDDDAEATFMEDNNGDHGGGAEGDGNGGAAAPVDGPSPMSLLSNTLSAIG
LAVGVNSCGKPPRSPRASKGSPRLSVSGSGSSPRVSPRSSPRAAPRSRTS
PFFDTSGSGGGCEGLPRMLEEDEEEDFPLGVTRQSLESRLADAAAASSSL
AAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPSSVVS
EEVSEESSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKE
LQGRTSTLEQEKVNLTLALAPLEERLQAKERAWESERRELVSRSEANLRS
ARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQR
TVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRL
IEAEKVASRVLTAEEG
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mRNA from alignment at chr_27:2157980..2164225-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_002410.2 ID=Ec-27_002410.2|Name=Ec-27_002410.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6246bp|location=Sequence derived from alignment at chr_27:2157980..2164225- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTCGCCCCCAAAATACCGTTGCGCGAAACAAGTCCAAAGACGCGCGAAGC
CTTCAGGTCAAGAGCGGGGCTGAGGACACAGCACGCACCGCGCAAGGGAG
GTTTTGGTCTCCAAGGGGTGCAGGGAAGTCCTGGCACGCTGGTGTAGGCA
GGTTCGTTGAGACTTCACCCTCTGCAAGCACAGAGAAACCCTACAGCAGT
CGCGCGTGTGTCGCCCTCGGGAATCTGCCCGTTGGTACATTCGCAGTATG
ATGTCTTCGGCGGCGTTCGAGCGCTCCTTGAGAGGGGGGGCATCATCTTC
GTCCTCGTCGATGGCTACCTCCTCCTCCTCCTCCTCGACATCCTCGCTGA
GGCCCCCCAAGAAGAAGAGCGTCACGTGGGACGACGACGAGGTGCTTCCG
GACGACAGCGGCGGCGAATCCGGCGTGCTTCGGAACAGTAGCATCGCCTG
CACCAACACCAACAACGGGGGTGTAGCAGCAGCAGCAGCCGGGGCAGGTG
CAATCCACGAGCCGCAGAGCTTCGACCACCTCCGAGTGCCGGCCAAGCCT
TCGGCGAGCAGCACCCGAATCGTCGACGCGGCCGCGAACCAACACCACCT
CGGCGCGGGCTCGGCTGGCGGCGGCGGCGGCCTGTTAGCCTCCGCCCGCA
AGAGGGTGGGAGCGGCGGAGCAGACGCGAGGCATCCAGATGGGGCCCCTA
CGAGTGCGGACCCCGGCCAAACCCAAGCGGTCTCGCGCGGACGCGACGCC
CTTCCACGCCCCGTCCTCTTCTTCCGTTCCCGCTCCCAGCGCGGGCGCCA
CACACAACTACCTCCGGCGCGGCGGCGGCACGGCGGCGGCGGCAGCCGCA
GCGGTCGCGTCGTCGCCGACTAATAGATCGTCTCCTACTTCCGCCGCCGG
TGCCGCTGCCCGCCGCCCGAGGAGTCCAAGCCTGGCAAGGTCGCCTACTG
CCGCCGGTGCTGGCAGATCATCTCCCCCGCTCCATCTAAGTAGAATCCCT
CGCGCCGCCGAGCCGACTGCTGCCAGGCCCGGCGCGGCGGCTACACCCGG
GGCCGCAGGCAGCACCAGGAATCGCAGCAGCCCCCGTCGGCAGAGGCACA
TGTCCTCGAGCCAAGCGCTACGCAACGTCGCCGGGGGCAACGGCGAAGAC
GACGACGACGCCGAGGCTACCTTCATGGAGGACAACAACGGAGATCACGG
CGGGGGTGCGGAGGGAGACGGCAACGGCGGTGCGGCGGCCCCTGTGGACG
GCCCATCCCCGATGTCTCTCCTGTCGAACACTCTCTCAGCAATCGGCCTC
GCGGTCGGGGTAAATTCCTGCGGAAAGCCACCCAGGTCGCCCAGGGCTAG
CAAGGGCTCCCCCAGGCTCAGCGTTAGCGGTAGCGGCAGTTCCCCGAGGG
TTTCTCCGAGGAGCTCTCCGAGAGCTGCTCCGAGAAGCCGCACGTCGCCG
TTTTTCGACACTTCCGGGAGCGGCGGCGGCTGCGAGGGCCTCCCGCGTAT
GCTGGAAGAAGACGAGGAAGAAGACGTGAGTTTGATGTGTCTCGCCCAGT
CGGCGGCACAGTAAGCGCATATACGTGTAGCACAGCAGTTGGGTCGACCC
TCTCTTATTGCTTTTGAACGCGTCTCGTGACGTGCAGGCCAGTTTTCGCT
GCGCGGCAGCGCGTAGAGCGCCTGGTTGTGCACATGCCTGGTCTGTACCC
GCTCTCGCCGTCTCTGTAGACTGCAATGAGAGCAGGGGAAGTCGGGAATT
AACATCAACAGCACCTACTGGTTGGGACCACACTTCAGTGTTTCACATCT
TATCTAGAGATGCTGTGCATAACTTCCACGCAATCGAACGGCTGTCCTGA
TGTGTAGGATAACGAGGTCTTCCGAACTCGCTCTGTTGCTGTACCGTGTG
TTCGGGATGTTATCAGCCGCTGCTATGCTGTTGGTGCCCAGCCCCTCTCC
TCGTCGCCCGCACATTACCTTACCCCGTTCCCCGAACAGAATCACGTGTA
GCGTGACCTCGAATGATTGCACCGTGTCCCATACATTAAACATTTATTTT
TTTCCCGATCTACACGGCAGTTCCCCCTGGGCGTGACTCGGCAATCTCTG
GAGAGCCGATTGGCGGACGCGGCGGCCGCGAGCTCGAGCCTGGCGGCCGT
CGCTCACAGGGCCTCCTTGGAAAACATGCAGAACAACAGCCCGGCTACCT
CGCTGAGCCCTTTCACCAAGAGCAGCACCACAGTCAGGCGGACCTCGACT
AGCCGCTACAACGTCAACGGCGAGGTGGGCGACCCCGCGGGTAGTTGGGA
CGGGGGCGGTCGGTGTGTCGTGCTTGTTCAGGAGGCAGGTGCTAGCACGA
CAGCGGTATTTAGTTGGGATTTCTTCAGCGGATCAAATACCGTTGCTGTT
GACCCGTCCTTGGGCTATGTATGCCGGAACACGATAGCTCTTACCCCGAT
TAGCTTCATCTGCCAGGTCAAAGCGGGTCCTTGAAAACGCGATGGCCGAG
AGGTTCTTAGCTACACTATGTAGCTGTGCGCGGGCTGCTTGCCCGTGCCG
TGATTGTTTTGTTCAAGCGTTTGCCCCGTGTCCTTCCGACACAACTCTTG
CTACCCGCGTCCCGTGTAGAGCATACGGGCCACGTTCACCCTCCGACCCC
AAGCCCGTCCGTGCCAAAGGAGTCTCGACGGGAGTGGCTGTTGTGTCAGC
TACAGCAGTCTACCCAAATCCCACAACTGAAGAAGTAGTCATTTTTCTCT
TGTATCGCTGACAAGCACCCCATCACACCATTCCCCTCGTCGTTCGTTCG
GCTCTCCCCCCCCCCCCCTCCCCCTCTTTCGATGTACCCGCGCCCCCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TTTGTTTTTTTGGGTTTTCCCCCCCCCCCCCTCGCCTTTTTTGGATGTAG
GCGCGCCAGGAAATTTTTTGGGGGTGACCGCCGATTTGTACCCCCCCCCC
CCTGCACGCCCTTCGGAATACACGTATGATGGCACGCAAATGTGCATCAT
CCAGCCGAGCTCCGTGGTGTCGGAGGAGGTCAGCGAAGAGTCGTCGGTCA
CGGTAACCTCCGCCGCCTGCGGGTGCCACCACCAGCATGGCTGCGCCATC
GGGGCCATCGGCGGGCAGATGCCGGCGGGCGAGAACGGTTTCTCGGTCGA
GGTCCGGGACCGGCTGAAGGAGCTTCAGGGGAGGACGTCCACGCTGGAGC
AGGAGAAGGCAAGATGATAGCCATTGAACAAATTAAAGAGGAGAAAGGGG
GGGGTGTTTTGAAACGGGGAGGATCCGAAGGGTCGATGCGTTGAGTTTAT
GGTTGGGATGCGCGTTCGGTGTGGCGGGAGCGTGGGTGGTGTACGCGCCG
ACAGTTTGACGGTGTCGTGTCGGGATTGTGTGGACTGACGGAGGTGTTCG
GGGTTTGTACCCCGGCCAATTCTCTCCCAAGCAAACACGGCAAAAGCGTA
AACTAGATACCTGCACTTGTTTCCATTGGGTTTTCAAAAAACTCCAAGAA
ACTATGAATATGGAAGCCGAAATCAACCATTTGACTGACTATAATAGTCT
ACATTTGACTGACTAGTCTAATGGTTTGGTTTCGGCTTCTTTAGATCCTT
CCTGTGCGACCTGCCTCCGGTGTGACCCCGGCTGATGCGTCAAACACAAG
CAAAGACAACTACTGCTACGACGATGACGATGACGAACGACGGCATGAAA
CGAAACGAAACAACTCCAAAACCAGGTCAACCTCACGCTGGCCCTGGCGC
CGCTCGAGGAGAGGCTGCAGGCGAAGGAGAGGGCGTGGGAGTCGGAGCGG
CGCGAGCTCGTGTCGAGGTCGGAGGCGAACCTGAGGAGCGCGAGGGTCGC
GGAGGACAGGTGCCGCGAGGTGGAGAGGCGCAAGTCCGAGATGGAGGAGG
AAAGGCACTCGCTGGACGCGGAGCTTCGGCGGCTGAGGGGGGAGATCGAG
CAGAGGGAGAGCAAGACGGCGGCCAGCTTCTGGCAGAGGACGGTGGCGGC
CGACAGGGAGAAGACGCGCCTGGAGAACGCCCTAGACCAAGCCGAGGCAA
AGGTGGGCAGACTTGTTGTTTTGTATTGAGTTTTGATGGAACCAAGAGCG
AGCGCGCGTGAGAGGGTGAGAGGGCTGCTTTGGGGGGTGTATCAGGACCT
GGTGTGGCTCACGTGGCTCCGTTCGCTTTCGGCTCGCGTTCCAGCCCGAC
CAATGTACATAGGCCTGCCGTATTTCGACCTGCCTTACATGGCACTGCCT
TGTGCAGGGTTGCATGTTTTGAGTTACCTCTCTCGATGGTTGGTGACAAT
TCACCAGACAGGGCGATATAGACGGGGGTGAGCGGCAAAACTCAGTACCC
ATGTCATTGATTGTTGTGCACCATGCGTTTGAATGTACTTGATTTTTACA
CGCGCTGGTATTGAGGCGGTACGTACAAAGCGAGGGCGGTCATGATCACA
TCCGTCGTGCAAGCCTGAAGACATGATATCCACCCGCTGCTTCCGCGTTC
TGTTGTGGCATTTCTTAGGAAGTATGCAAGATTTTATGGAAAGACTACCC
GTTCGAGATACTATAGTAATACCACAGTAGTCGAAGGGGATATCACGAAG
TCTTAACAGCAGGGAGTGGGAGAAAAACACGGCTGCGTAGATATTTGGCT
TATTTAGAGTCTGTTTATGCCTATGCACTGTTTTTATTGCCTGACGCTAT
TGGTCTACTCGAAAAGCGTTGTTGGATCTAACGGGGGCTTTTGGTATTGC
CGCTATTTGCCCCCACAAACTCGCGCGTTTCCGCTGCGTGTCGTTTGTAG
ATGGCGTTCCGCTACAGATACGTGTCACCATCCACCCATCTGCCTGTGTC
ATTTTCCCTCTGTGTCCTCTTGACCGTCACCAAATTCCGTCTAACAAGGT
GGTGACCTTGGGTAAGGAAAAATCCGAGCTTGAGGCAGGGTTGATGCCCA
TCCAGTCCGAGAACAGCTCTCTCAAGTTCCGGCTCATCGAGGCAGAAAAG
GTGATTGCATACCATTGGTCTCCCCGATAGTCTAGTGGCCAAGGTCGGGG
GTTCGAACCCCGGCGTAAGCGAGCTTTTCTTGCAAAGTGAGTTTTTTCTC
TCGCTTCCGTTTCTGGGGTGGGTGGAAAGCGCTAGTTCGTGTGTGCACTG
AGGGAAGAGAGTACCTGTCAGGACTCTTCTCTCATTAGTAATCGAAGGCA
AAGTAGGTATGTACCGCAGGAGGGTGGGTAGGGGGGCCTCAGGGAGAGAA
AACCTTCTGTGCGGCCACGGGTTGGAGTGAACGGGACACATGCCTTGAGC
GCTGATTTGAAGTGAAGAAAAACAAAGCAAAAAAAATACCATTGGTTAAA
AGCAGACCTCTATGCGATACTGTACTGTTATTTTCAATGGTCTTTCTTTC
TTTATGAGTGAAAGTGCGGGGGCTTATTTGTGAAGGAAGGTGACGCCATT
TCCATTGAGAGGATGCAATGCAAGCCTTTGCGGGACTAAATAAACAGTAC
AAAGACCAGAATGATAAACTCAAGACCTGGACGTTTAGCAGATCTGTGCA
CCGTTCTGCGCGTTTAAGCGCAGCGTTGTTCTGGTTGGTTTCTGTTTGCC
CCTGGCTTGTACTTGTGCTCCTACTTTATTTTCTTCACTCTAGTCGTCCT
TTTTCCTCTTGCCTATAGCAAGCATCTCGTCGGCTTCTTGGACGAGGTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGAGGTTGTTGAGGTTTCGCAGAACTCATGCGCGCCTTCGTGTGTGTGG
CGTGCTTGTGTATAGCGTTGACCTGAGTAACCGTTTTTGCGTGTTCTTTC
TTTCGGCATGTGTTTCATGTTTATTTTTCATCAAGGTGGCCTCGCGTGTC
CTGAGCAATGATGTGTGTAAAGTATGTGCTTTTGTTCTGATGGGTTTCCC
GTTATGGTTCATGAGGGTGTTCTCGCGTGTCCTGAGCAATGATGTATGGG
TGTCATTTTTCTGGTAGTTGCTCGTTTATTGTTCATCAAGGTGGCATCGC
GTATCCTGACCTATGTGTGTGGTATGTGTTTTGTTCTGATGTTTCCCGTG
ATTGTTCATCAAGGTGGCATCGCGCGTCCTCACCGCTGAGGAGGGC
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Coding sequence (CDS) from alignment at chr_27:2157980..2164225-

>Ec-27_002410.2 ID=Ec-27_002410.2|Name=Ec-27_002410.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2148bp|location=Sequence derived from alignment at chr_27:2157980..2164225- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTCTTCGGCGGCGTTCGAGCGCTCCTTGAGAGGGGGGGCATCATC
TTCGTCCTCGTCGATGGCTACCTCCTCCTCCTCCTCCTCGACATCCTCGC
TGAGGCCCCCCAAGAAGAAGAGCGTCACGTGGGACGACGACGAGGTGCTT
CCGGACGACAGCGGCGGCGAATCCGGCGTGCTTCGGAACAGTAGCATCGC
CTGCACCAACACCAACAACGGGGGTGTAGCAGCAGCAGCAGCCGGGGCAG
GTGCAATCCACGAGCCGCAGAGCTTCGACCACCTCCGAGTGCCGGCCAAG
CCTTCGGCGAGCAGCACCCGAATCGTCGACGCGGCCGCGAACCAACACCA
CCTCGGCGCGGGCTCGGCTGGCGGCGGCGGCGGCCTGTTAGCCTCCGCCC
GCAAGAGGGTGGGAGCGGCGGAGCAGACGCGAGGCATCCAGATGGGGCCC
CTACGAGTGCGGACCCCGGCCAAACCCAAGCGGTCTCGCGCGGACGCGAC
GCCCTTCCACGCCCCGTCCTCTTCTTCCGTTCCCGCTCCCAGCGCGGGCG
CCACACACAACTACCTCCGGCGCGGCGGCGGCACGGCGGCGGCGGCAGCC
GCAGCGGTCGCGTCGTCGCCGACTAATAGATCGTCTCCTACTTCCGCCGC
CGGTGCCGCTGCCCGCCGCCCGAGGAGTCCAAGCCTGGCAAGGTCGCCTA
CTGCCGCCGGTGCTGGCAGATCATCTCCCCCGCTCCATCTAAGTAGAATC
CCTCGCGCCGCCGAGCCGACTGCTGCCAGGCCCGGCGCGGCGGCTACACC
CGGGGCCGCAGGCAGCACCAGGAATCGCAGCAGCCCCCGTCGGCAGAGGC
ACATGTCCTCGAGCCAAGCGCTACGCAACGTCGCCGGGGGCAACGGCGAA
GACGACGACGACGCCGAGGCTACCTTCATGGAGGACAACAACGGAGATCA
CGGCGGGGGTGCGGAGGGAGACGGCAACGGCGGTGCGGCGGCCCCTGTGG
ACGGCCCATCCCCGATGTCTCTCCTGTCGAACACTCTCTCAGCAATCGGC
CTCGCGGTCGGGGTAAATTCCTGCGGAAAGCCACCCAGGTCGCCCAGGGC
TAGCAAGGGCTCCCCCAGGCTCAGCGTTAGCGGTAGCGGCAGTTCCCCGA
GGGTTTCTCCGAGGAGCTCTCCGAGAGCTGCTCCGAGAAGCCGCACGTCG
CCGTTTTTCGACACTTCCGGGAGCGGCGGCGGCTGCGAGGGCCTCCCGCG
TATGCTGGAAGAAGACGAGGAAGAAGACTTCCCCCTGGGCGTGACTCGGC
AATCTCTGGAGAGCCGATTGGCGGACGCGGCGGCCGCGAGCTCGAGCCTG
GCGGCCGTCGCTCACAGGGCCTCCTTGGAAAACATGCAGAACAACAGCCC
GGCTACCTCGCTGAGCCCTTTCACCAAGAGCAGCACCACAGTCAGGCGGA
CCTCGACTAGCCGCTACAACGTCAACGGCGAGCCGAGCTCCGTGGTGTCG
GAGGAGGTCAGCGAAGAGTCGTCGGTCACGGTAACCTCCGCCGCCTGCGG
GTGCCACCACCAGCATGGCTGCGCCATCGGGGCCATCGGCGGGCAGATGC
CGGCGGGCGAGAACGGTTTCTCGGTCGAGGTCCGGGACCGGCTGAAGGAG
CTTCAGGGGAGGACGTCCACGCTGGAGCAGGAGAAGGTCAACCTCACGCT
GGCCCTGGCGCCGCTCGAGGAGAGGCTGCAGGCGAAGGAGAGGGCGTGGG
AGTCGGAGCGGCGCGAGCTCGTGTCGAGGTCGGAGGCGAACCTGAGGAGC
GCGAGGGTCGCGGAGGACAGGTGCCGCGAGGTGGAGAGGCGCAAGTCCGA
GATGGAGGAGGAAAGGCACTCGCTGGACGCGGAGCTTCGGCGGCTGAGGG
GGGAGATCGAGCAGAGGGAGAGCAAGACGGCGGCCAGCTTCTGGCAGAGG
ACGGTGGCGGCCGACAGGGAGAAGACGCGCCTGGAGAACGCCCTAGACCA
AGCCGAGGCAAAGGTGGTGACCTTGGGTAAGGAAAAATCCGAGCTTGAGG
CAGGGTTGATGCCCATCCAGTCCGAGAACAGCTCTCTCAAGTTCCGGCTC
ATCGAGGCAGAAAAGGTGGCATCGCGCGTCCTCACCGCTGAGGAGGGC
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Synonyms
The feature 'Ec-27_002410.2' has the following synonyms
Synonym
Esi0036_0136
Esi_0036_0136