Ec-27_002320.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_002320.2
Unique NameEc-27_002320.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length142
Homology
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BLAST of Ec-27_002320.2 vs. uniprot
Match: A0A6H5K110_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K110_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.220e-14
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2 
Query:    2 GNLDVDMFNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQ 127
            GNLDVDMFNKFM EFLRENSANLFRSKGVLAFKDQERK+VFQ
Sbjct:  408 GNLDVDMFNKFMGEFLRENSANLFRSKGVLAFKDQERKYVFQ 449
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BLAST of Ec-27_002320.2 vs. uniprot
Match: D8LLE4_ECTSI (PRLI-interacting factor L-like (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.670e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:   20 MFNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQ 127
            MFNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQ
Sbjct:    1 MFNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQ 36
The following BLAST results are available for this feature:
BLAST of Ec-27_002320.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K110_9PHAE7.220e-1495.24CobW C-terminal domain-containing protein n=1 Tax=... [more]
D8LLE4_ECTSI4.670e-13100.00PRLI-interacting factor L-like (ISS) n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:2061965..2064102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1322
Hectar predicted targeting categorysignal anchor
Gene idEc-27_002320.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_002320Ec-27_002320Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 2061962..2064102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002320.2Ec-27_002320.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 2063382..2063807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002320.2.1Ec-27_002320.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2061965..2062092 +
Ec-27_002320.2.2Ec-27_002320.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2062421..2062496 +
Ec-27_002320.2.3Ec-27_002320.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 2062985..2064102 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0023205UTR:Ec-27_002320.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 2061965..2062092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002320.2CDS:Ec-27_002320.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 2063382..2063807 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0023203UTR:Ec-27_002320.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 2063808..2064102 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_002320.2 ID=Ec-27_002320.2|Name=Ec-27_002320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=142bp
MPRGRERRVPQLRVGLSMEKLPFVSPLLCEGVAPAGLKLHMPIVYAPLGS
VGGRLVRKMNIGVQQCVVLPLFYLLFYLSSLLLFSDVVAVAFFAGDRFGA
GGRRALMWNMVAPRKGGLRDLARGRGTETACIRFACFSHVG*
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spliced messenger RNA

>Ec-27_002320.2 ID=Ec-27_002320.2|Name=Ec-27_002320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1322bp|location=Sequence derived from alignment at chr_27:2061965..2064102+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCGGGAACCTCGATGTCGACATGTTCAACAAGTTCATGGCGGAATTCCTC
CGGGAGAACAGTGCCAATCTGTTCCGATCGAAGGGTGTGCTGGCGTTCAA
GGACCAGGAGCGGAAGTTTGTGTTCCAGGGAGTGCACGAGCAGATTGACT
GCGAGCCGGCGATTAACGGGTGGGCCGAGGGCGAAGAGCGCGTGAGCAAG
ATAGTCTTCATCGGTCTCGACCTGGACAAGGACTACATCACCGAGAGCTT
CAAGGCTTGTATCGTGCCAGAGGCGACAGAGGCGTGACGTAGATCAATAT
TCCACTTGTCGTGACCATTGGGACAAAATGGTATCTGTTATCCGAATGGT
CCTTTTATTTCCGAACAAAGTGGTATTTTCGTCTAAGTAGCAATAGTCAG
AGCGAAAGGCAGCAACCCCCTTTCTTCTTCGAGACAACTCGCAGCGAGAC
GTCGTGCGACGAAGAGAACGAAGCACGAGGAAAATAATCGCACGTCCGTT
TGGAAAAGTATCGCACTTTTTTGTTTTTTCTGCGCGGCAATGAAGCACGG
CTTAGGATTGTATTCCGTTATTTTGGCCACGTACCCCACCCCCGTGTGTG
TATGCCGAGAGGAAGAGAAAGACGAGTTCCCCAGCTGCGTGTGGGACTCT
CGATGGAAAAGCTTCCTTTTGTTTCCCCGTTACTATGCGAGGGTGTGGCT
CCCGCTGGACTCAAACTTCATATGCCGATTGTATATGCGCCTCTTGGATC
TGTTGGAGGGAGGCTGGTGCGAAAAATGAATATTGGGGTACAGCAGTGTG
TTGTGCTGCCTTTGTTTTATTTGTTGTTTTATTTAAGTAGTCTCCTGCTT
TTTTCTGATGTTGTCGCAGTCGCCTTTTTTGCGGGTGATCGGTTTGGCGC
AGGCGGGCGCCGCGCCCTCATGTGGAACATGGTTGCACCGAGGAAGGGAG
GTCTTCGGGACCTTGCCCGCGGAAGAGGGACTGAAACAGCATGCATACGC
TTCGCTTGTTTTTCGCATGTGGGTTGAAGGCGTTGGGAAAGTGGCAAGCG
TGTTCCTGTGCACGCTCTTTGTGTTTTCACATGTTTGTTGTGTGATGCTA
CAATACAGCTGGACGTGCCCTTGCTGAGTTTAAAGAACATTCCCTCCGAA
CCATCGCCGGTAGCTTGTGGGCGGAGTGGATGGCGATAGCGGGCTCATGT
CGTAGCTGAGTGTGTGCCCGATTCATGTGTTTTACATAGTAGCCGTTGTG
ATTTCTAGTTGCCTGCCTCCCGTGGAAGAGATCGCTCTCTGAGAAATCGC
CGCTAAATCTAATCAACAGTTC
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protein sequence of Ec-27_002320.2

>Ec-27_002320.2 ID=Ec-27_002320.2|Name=Ec-27_002320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=142bp
MPRGRERRVPQLRVGLSMEKLPFVSPLLCEGVAPAGLKLHMPIVYAPLGS
VGGRLVRKMNIGVQQCVVLPLFYLLFYLSSLLLFSDVVAVAFFAGDRFGA
GGRRALMWNMVAPRKGGLRDLARGRGTETACIRFACFSHVG*
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mRNA from alignment at chr_27:2061965..2064102+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_002320.2 ID=Ec-27_002320.2|Name=Ec-27_002320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2138bp|location=Sequence derived from alignment at chr_27:2061965..2064102+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCGGGAACCTCGATGTCGACATGTTCAACAAGTTCATGGCGGAATTCCTC
CGGGAGAACAGTGCCAATCTGTTCCGATCGAAGGGTGTGCTGGCGTTCAA
GGACCAGGAGCGGAAGTTTGTGTTCCAGGTACGTGAGCTGTGTAATGTTG
AAATTCATTTTTTTTTCTTCGGTGGTGTTGTCGTTTGTCGTGGTCGCATC
CAATGTGGCTGTTTCTCTTGTCTGCTATGGTGTGTTGTATCGTTGTGTGT
GCACGCAAGCGTCAGAGGATCCATCTCCCCTTCCTCCTCACGCCGCCGCT
GTGACCCGGATCTTTTGGCGGAAAGGAACACATGGAATTGCCCGTACGTA
GACACTCCTTCCTCTACTAGATATTCCATGATGTTTGTATATACTTGCTG
CCTGCTGCCGACACCGCCTCGTTTCGTACGGAACAATTCACGGTCGAGCG
ATGCAGGGAGTGCACGAGCAGATTGACTGCGAGCCGGCGATTAACGGGTG
GGCCGAGGGCGAAGAGCGCGTGAGCAAGATAGGTAAGAATAAAGAAGGGA
TGTATTTGATATTTGATTCGCGGCCCTTTCCGGGTTTGTGTTTGAAGCAA
TCGGCTGCCAAGTGTGCAGTTGTCTGACTCGCGTCGGCCGCTCTAACTGC
CTGATCAATGTAACGAATGACTTGGTGGGGAAGAGCATTGCTTCCTTGTC
CGCGGGCCCCCGTTGTCGGGGGCCCCGCAGGGGAGCGAGCACAACAAGAA
GGGTTCAACCCTCTCCTGATTCACTAGTACGTTTGTGTAGCTGATCGTTC
TCCCCCGTGCCACATGTCTCTCTCTTGGCACGAATGTGCCTCCCCCGTTT
GATTCGTGTCCCTGTTTTCTGCCAAGCTGCAAGTGCTGTTGCTGGTCTTG
CACGTGGGGGCTGTCATGATATACTCTCTTGCTACCTGCTGTTCCTTGGC
GTCGTTTCACATCGTACAATTGACTAATAACCGCTTCTTTTCTCATCGGT
TTGGTCCCTCGTCTGTCCAGTCTTCATCGGTCTCGACCTGGACAAGGACT
ACATCACCGAGAGCTTCAAGGCTTGTATCGTGCCAGAGGCGACAGAGGCG
TGACGTAGATCAATATTCCACTTGTCGTGACCATTGGGACAAAATGGTAT
CTGTTATCCGAATGGTCCTTTTATTTCCGAACAAAGTGGTATTTTCGTCT
AAGTAGCAATAGTCAGAGCGAAAGGCAGCAACCCCCTTTCTTCTTCGAGA
CAACTCGCAGCGAGACGTCGTGCGACGAAGAGAACGAAGCACGAGGAAAA
TAATCGCACGTCCGTTTGGAAAAGTATCGCACTTTTTTGTTTTTTCTGCG
CGGCAATGAAGCACGGCTTAGGATTGTATTCCGTTATTTTGGCCACGTAC
CCCACCCCCGTGTGTGTATGCCGAGAGGAAGAGAAAGACGAGTTCCCCAG
CTGCGTGTGGGACTCTCGATGGAAAAGCTTCCTTTTGTTTCCCCGTTACT
ATGCGAGGGTGTGGCTCCCGCTGGACTCAAACTTCATATGCCGATTGTAT
ATGCGCCTCTTGGATCTGTTGGAGGGAGGCTGGTGCGAAAAATGAATATT
GGGGTACAGCAGTGTGTTGTGCTGCCTTTGTTTTATTTGTTGTTTTATTT
AAGTAGTCTCCTGCTTTTTTCTGATGTTGTCGCAGTCGCCTTTTTTGCGG
GTGATCGGTTTGGCGCAGGCGGGCGCCGCGCCCTCATGTGGAACATGGTT
GCACCGAGGAAGGGAGGTCTTCGGGACCTTGCCCGCGGAAGAGGGACTGA
AACAGCATGCATACGCTTCGCTTGTTTTTCGCATGTGGGTTGAAGGCGTT
GGGAAAGTGGCAAGCGTGTTCCTGTGCACGCTCTTTGTGTTTTCACATGT
TTGTTGTGTGATGCTACAATACAGCTGGACGTGCCCTTGCTGAGTTTAAA
GAACATTCCCTCCGAACCATCGCCGGTAGCTTGTGGGCGGAGTGGATGGC
GATAGCGGGCTCATGTCGTAGCTGAGTGTGTGCCCGATTCATGTGTTTTA
CATAGTAGCCGTTGTGATTTCTAGTTGCCTGCCTCCCGTGGAAGAGATCG
CTCTCTGAGAAATCGCCGCTAAATCTAATCAACAGTTC
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Coding sequence (CDS) from alignment at chr_27:2061965..2064102+

>Ec-27_002320.2 ID=Ec-27_002320.2|Name=Ec-27_002320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=426bp|location=Sequence derived from alignment at chr_27:2061965..2064102+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGAGAGGAAGAGAAAGACGAGTTCCCCAGCTGCGTGTGGGACTCTC
GATGGAAAAGCTTCCTTTTGTTTCCCCGTTACTATGCGAGGGTGTGGCTC
CCGCTGGACTCAAACTTCATATGCCGATTGTATATGCGCCTCTTGGATCT
GTTGGAGGGAGGCTGGTGCGAAAAATGAATATTGGGGTACAGCAGTGTGT
TGTGCTGCCTTTGTTTTATTTGTTGTTTTATTTAAGTAGTCTCCTGCTTT
TTTCTGATGTTGTCGCAGTCGCCTTTTTTGCGGGTGATCGGTTTGGCGCA
GGCGGGCGCCGCGCCCTCATGTGGAACATGGTTGCACCGAGGAAGGGAGG
TCTTCGGGACCTTGCCCGCGGAAGAGGGACTGAAACAGCATGCATACGCT
TCGCTTGTTTTTCGCATGTGGGTTGA
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Synonyms
The feature 'Ec-27_002320.2' has the following synonyms
Synonym
Esi0036_0123
Esi_0036_0123