Ec-27_002110.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_002110.2
Unique NameEc-27_002110.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length270
Homology
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A6H5JVV9_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV9_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 3.050e-119
Identity = 259/281 (92.17%), Postives = 261/281 (92.88%), Query Frame = 1 
Query: 1576 VFTERLYDILSHERLGAGGGAAASQQARFLSLAFGTEGRAAPPGFPQKQYQQHYQGAGLPSPFGSTATTXXXXXXXXXXXXXXXXFSHLPLPSQLQEQPRRRQDPSESVESTHRRGGEGEEGTAATGGMVMSEQERQALLARSRSGPSAAXXXXVAAAXXXXXXXXXXXXXXXAGYSRDDEHRYYQQQQDAGYMYDRSPDRSPLGRGGGFSFGSGRFGSGAPQGSGGGALPPLPSLNFEQYNVGGXXXXXXXPVGVGEIRRAPWYGPESSYAPPPIGSYVN 2418
            VF ERLYD LSHERLGAGGGAAASQQARFLSLAFGTEGRAAPPGFP KQYQQHYQGAGLPSPFGSTATT   XXXXXXXXXXXX FSHLP P QLQEQP RRQDPSES EST RRGGEGEEGTA TGGMVMSEQERQALLAR RSGPSAA    VAA XXXXXXXXXXXXXXXAGY+RDDEHRYYQQQQDAGYMYDRSPDRS LGRGGGFSFGSGRFGSGAPQGSGGGALPPLPSLNFEQY+VGGXXXXXXXPVGVGEIRRAPWYGPESSYAPPPIGSYVN
Sbjct:  433 VFAERLYDFLSHERLGAGGGAAASQQARFLSLAFGTEGRAAPPGFPHKQYQQHYQGAGLPSPFGSTATTASCXXXXXXXXXXXX-FSHLP-PPQLQEQPCRRQDPSESEESTLRRGGEGEEGTA-TGGMVMSEQERQALLARPRSGPSAAAAA-VAAVXXXXXXXXXXXXXXXAGYTRDDEHRYYQQQQDAGYMYDRSPDRSLLGRGGGFSFGSGRFGSGAPQGSGGGALPPLPSLNFEQYSVGGXXXXXXXPVGVGEIRRAPWYGPESSYAPPPIGSYVN 709
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 135 bits (339), Expect = 5.170e-30
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 3 
Query:  396 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKAS 719
            KYPR G+RGAPQAF  KLYEILE E  D++ W A G  F VRD  R S E+L ++F+  KF+SFQRQLNLYGFRKIT+GS++GSY H +FR+G+   L  +RRS  +S
Sbjct:    2 KYPRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSS 109
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.190e-28
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 3 
Query:  396 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 704
            KYPR G+RGAPQ FP KLYEIL  E  D++GWT++G+ F + +     +E+L  +F+  K+SSFQRQLNLYGFRKI KG ++G+Y H HF R +  +L  +RR
Sbjct:   94 KYPRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRR 196
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.540e-28
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 3 
Query:  396 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR---STKASPARVAVPVSPAS 755
            KYPR G+RGAPQ FP KLYEIL  E  DI+GWT +G+ F +++     + +L ++F+  K+SSFQRQLNLYGFRK+ KG++ GSY H  F R +   L  +RR   S  A P++   P S  S
Sbjct:    2 KYPRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRRIPQSAGAFPSQSQPPPSTTS 124
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.280e-27
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 3 
Query:  396 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRSTKASPA 725
            +YPRFGKRGAPQAF +KL+E+L  E+PDIV WT +G  F + D  + +SE L ++FK +  +SFQRQLNLYGFRK  KG +SG +QH  F+R     L+ +RR+ +AS A
Sbjct:   16 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQA 125
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.140e-27
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 3 
Query:  396 KYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRS 707
            KYPR GKRGAPQAF  KLYEILE E+ +++ W+ TGR F ++D     S+VL ++F+  K+SSFQRQLNLYGFRK TKG + G Y H +F R  R  L  +RR+
Sbjct:   72 KYPRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRT 175
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 8.610e-27
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 3 
Query:  384 SPASKYPRFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRRS 707
            S A +YPR GKRGAPQ FP KLYEIL+ E+ D + WT +G  F ++D     + VL ++F+  KFSSFQRQLNLYGFRKI+KG+E+G+Y H  F R +   L  +RR+
Sbjct:   60 SDAMRYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRT 167
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.460e-25
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  411 GKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 704
            GKRGAPQAFP +LYE+L+ E+  +V W   G GF + D     +  L ++F+ +K++SFQRQ NLYGFRKIT+G ++G Y H HF++G    L+ +RR
Sbjct:    1 GKRGAPQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKITRGPDAGMYIHEHFKKGRLEDLVKVRR 98
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BLAST of Ec-27_002110.2 vs. uniprot
Match: D8LU68_ECTSI (Heat Shock transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU68_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.720e-25
Identity = 53/100 (53.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:  405 RFGKRGAPQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 704
            RFGKRG+ QAF   L++IL+ E+P ++GW+A+G+ F + D  +   E++ RFFKQ+K+SSFQRQLNLYGFRK+ +G+E+G Y HP F RG+   L  +RR
Sbjct:   42 RFGKRGSGQAFALGLFQILKTEDPKVIGWSASGKAFRIGDSEKFCKEIMPRFFKQNKYSSFQRQLNLYGFRKLVRGNEAGGYMHPLFERGKPEQLSQVRR 141
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BLAST of Ec-27_002110.2 vs. uniprot
Match: A0A835Z0U6_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 6.580e-25
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 3 
Query:  426 PQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKITKGSESGSYQHPHFRRGERTTLLTIRR 704
            P  FP  L  ILE E+ DI+GW+ +GR F +R+      ++L ++FK DKFSSFQRQLNLYGFRKI KG+ESG Y H +FRRG    L  +RR
Sbjct:    1 PAGFPHILASILENESADIIGWSQSGRSFGIREMNAFKDQILPQYFKHDKFSSFQRQLNLYGFRKIVKGNESGCYIHTYFRRGHPELLKQVRR 93
The following BLAST results are available for this feature:
BLAST of Ec-27_002110.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVV9_9PHAE3.050e-11992.17HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
A0A6V1QFS1_HETAK5.170e-3059.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G7U9_9STRA1.190e-2853.40Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2BSE7_9STRA3.540e-2848.78Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YGA3_9STRA1.280e-2753.64HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2WKC6_9STRA5.140e-2755.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2R5C8_9STRA8.610e-2753.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z6Z9_9STRA2.460e-2548.98HSF-type DNA-binding-domain-containing protein (Fr... [more]
D8LU68_ECTSI3.720e-2553.00Heat Shock transcription factor (Partial) (Fragmen... [more]
A0A835Z0U6_9STRA6.580e-2554.84HSF-type DNA-binding-domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:1818619..1825619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length4391
Hectar predicted targeting categoryother localisation
Gene idEc-27_002110.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_002110Ec-27_002110Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 1818619..1825619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002110.2Ec-27_002110.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 1819107..1822377 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002110.2.1Ec-27_002110.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 1818619..1819134 +
Ec-27_002110.2.2Ec-27_002110.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 1821596..1822657 +
Ec-27_002110.2.3Ec-27_002110.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 1822807..1825619 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0021105UTR:Ec-27_002110.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 1818619..1819106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_002110.2CDS:Ec-27_002110.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 1819107..1819134 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0021103UTR:Ec-27_002110.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 1822378..1822657 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_002110.2 ID=Ec-27_002110.2|Name=Ec-27_002110.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=270bp
MDCNGKGVRGPRPRPVELRSVGPLLQAGQVLQLPAPAQPVRLPQDHQRQR
ERLLPAPPLPPRRAHDPPHHPPIDQGISRPRRCPGLPGVRRHRHRHASAP
GPPQRQRRRQQQQQQQQQQQCIHHERRRRRRQAPEIRDAEPAPRLRVSRR
APVAPPPRSRWRRRRRWRPLSAGAGSPTAAVDIGRPRGHPDRHDSPQQHD
PCEKATAGREQQLGSLPGHSRRRRPCHLRGRPQRRSSGRVAAVAGRLQPL
LFLLLRRDSRQRQRRTGGR*
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spliced messenger RNA

>Ec-27_002110.2 ID=Ec-27_002110.2|Name=Ec-27_002110.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4391bp|location=Sequence derived from alignment at chr_27:1818619..1825619+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTTTCGGGTACAAGTAGGGGTAGGGCTTTTTGCCTACACCCCGCCACACA
ACAACAACAACAGCAACAGCAGCAGTCACTTCACGGCAACAACGTGCGAC
TCAACCCCCGCTGCAACACAACCGATCTGTTCTTCTCCCTGTGCCTGCCC
TTCTGCGTCTCTCCAGAGCAAGCGCGGCATCCATCGATAATCGAGCAGCA
GCAGCACACACACACACGCACCCAGCGGCGGCGTTCACAAAAGCGAAACA
TGCCTGTGCATAAACTTCTCCACAGGCGAACACCTTCGCCAGTCATGCCC
ACATCATCATCGTCTCGGACACCCAGCAGCAGCACAGCGCCTGCTGCGGC
CGTCGCGGCCCCGACTGTCGCTGCTGCCGCTGCTTCGCCGGCGTCCAAGT
ACCCGCGATTCGGCAAGCGGGGAGCCCCGCAGGCTTTCCCTTCCAAGCTG
TACGAGATTCTGGAGGGCGAGAACCCCGACATCGTGGGATGGACTGCAAC
GGGAAGGGGGTTCGAGGTCCGCGACCACGCCCGGTTGAGCTCCGAAGTGT
TGGGCCGCTTCTTCAAGCAGGACAAGTTCTCCAGCTTCCAGCGCCAGCTC
AACCTGTACGGCTTCCGCAAGATCACCAAAGGCAGCGAGAGCGGCTCCTA
CCAGCACCCCCACTTCCGCCGCGGCGAGCGCACGACCCTCCTCACCATCC
GCCGATCGACCAAGGCATCTCCCGCCCGCGTCGCTGTCCCGGTCTCCCCG
GCGTCCGCCGACACCGGCACCGGCACGCCTCCGCCCCCGGCCCACCTCAA
CGGCAGCGGCGGCGGCAACAACAACAACAACAACAACAACAACAACAATG
TATCCACCACGAACGGCGCCGCCGTCGACGACAAGCACCCGAGATCCGCG
ACGCCGAGCCCGCCCCCCGCCTCCGTGTCTCGCGGCGCGCTCCCGTGGCC
CCGCCCCCCCGCTCTCGTTGGCGGCGCCGGCGGCGGTGGCGGCCCCTTTC
AGCAGGGGCAGGGTCACCAACAGCAGCCGTCGACATCGGGCGCCCGCGAG
GTCACCCCGATCGGCACGACTCCCCACAACAACACGATCCCTGCGAAAAG
GCAACGGCAGGAAGGGAACAACAGCTGGGGTCCCTACCCGGACACAGCCG
CCGCCGCCGCCCCTGCCACCTCCGTGGGAGGCCACAACGCCGCAGCTCGG
GAAGAGTGGCAGCAGTGGCCGGGCGCCTCCAACCCCTCCTCTTCCTTCTC
CTCCGACGCGACAGCCGCCAACGGCAACGCCGAACAGGAGGCCGTTAAGG
CGCAGGCGCAGTCCGCGCTCGACCAAAACGACGTCGAGGTTGTGAGCCTG
CTGCAGCGGATGGCGAAGGAGGCGCAGGATAGCCCGGCGCGGAAACGGGT
CGCGCTGGCGGCGCAGCAGTGGGAAGGGGCACGGGCTCAGCAGGCCGCCG
CGGGCGAATCCTCTCCCGCGCGACACGCGCAGCAACAACAGCAGCAGCAG
CAGCAGCAGCAGGCCCGTTTCGAGAAGCCCCGACCGGCGCCGGCGGGGTC
TGACGAAGCCGGGCAAACCCAGCAGATGGTATTCACCGAGCGTTTGTACG
ACATCCTGAGCCACGAGCGCCTTGGTGCCGGCGGCGGCGCCGCGGCCTCC
CAGCAGGCGAGGTTCTTGTCGCTGGCGTTCGGCACGGAGGGGAGGGCGGC
ACCTCCAGGGTTCCCGCAGAAGCAGTACCAGCAGCACTACCAGGGCGCGG
GGCTCCCCTCGCCGTTCGGTTCTACGGCAACGACGGCCTCGTGTTCTTCT
TCCCCCTCTTCCTCCTCGGCGTCGTCCGCGGCGTTTTCGCACCTGCCGCT
GCCGTCGCAGCTGCAGGAGCAGCCGCGTCGCCGCCAGGATCCGTCCGAGT
CGGTGGAGTCGACGCACCGGCGGGGCGGCGAGGGTGAGGAAGGGACAGCA
GCAACAGGCGGGATGGTGATGTCGGAGCAAGAACGGCAGGCTCTTCTCGC
GCGCTCGCGGTCGGGGCCTTCGGCCGCCGCCGCCGCCGCCGTCGCAGCTG
CTGAGCAGGACAGACAGGCGCTGCTCGCGCGCCCCCGCACCGGCCCGGCC
GGCTACTCCCGCGACGACGAGCACCGGTACTACCAGCAGCAGCAAGACGC
CGGCTACATGTACGACCGCAGCCCCGACAGGTCGCCGCTGGGGAGGGGAG
GAGGGTTCTCGTTCGGGAGCGGCAGGTTCGGGTCGGGTGCGCCGCAGGGC
TCTGGCGGTGGCGCGTTGCCGCCGCTCCCAAGCCTCAACTTCGAGCAGTA
CAACGTCGGTGGCGGTGGCGGAGGCGGTGGTGGCCCTGTTGGTGTGGGAG
AGATCCGCCGCGCGCCCTGGTACGGACCCGAGTCGTCGTACGCGCCTCCG
CCAATCGGCAGCTACGTGAACTGATTAGCTCGGTTCTTTCTGCTTTCGGT
GGTGAGGAGAACAGGCTCATCAGCCTTCGTCGCTGGTAGCATTGGCACGG
CGGGAATAGGGTGGAGATGGATGTCCGATGAGAATGGCGCTGCTGCCTTT
GACACGAGGTTCACGTGTGATGTCGCCCAGAAAATGGGCTTCTTTCGATT
TTCGACTCTGATAAAGGGTTCCAGAGGGGGGAAGGCGAGGGGGGGGGTAT
TTTTGCGATGTCAAATGTACCTGCGTGCGTGAAGGGATGGGTGTGCGCAT
CCGTGCCAGACACATCGCTGCGGGTTCATAGAGAATAGGGTAGGAGTAGG
TTAAGCGAATCATTTAGGGGCCCCGAAAGGCTTAGTACGTGGTTTTGTGT
CGAGAAATGAACGAACTAGACCTGCGCCTGGGCGAAGAAAAGGCGACCGA
GACAGGGGTCATATGTCTGCAGAAATTGTTGAGTCTGGTGATCAGCGAAG
AAGGTATATCGTGTCTTGCTGCGGTTGTGTGTTGTGTTGTGTGTGCGCGC
GCGCTCGCGGCACACTCACCAGCTTGTTGTTCCGGCGCGGCAAAGTAGCG
GTGTTGGTTAGCTAAAAGAGCATGCCGTCGTAATCGTAAAGCAGCGCTGT
TTTGTGGTGGTGGTGTTGTCGATTGATGAGAAGGTAGTAATTTTCATGGC
ACTCGGGGCGAAAGTTCGAGAGGTGCTTGCTGGTGTAATTTTTTGACAGC
CTGTCGCCAGCCAGCCTACAGAAAGTTCGAAGAAGAGAAGCAACACAAAA
GCGGAGCCACTGGTAGTTATTGTTTTGGTTCATATTCTCTTGGTGTTTGG
TCTGGTTGTTTGCTCCGGGGGCGTATTGTTTAGACTCGCCCAGTTCGGAT
CCTGTGCTACGGTCTGCCAGAAGTTGACACACTTAAGTCTGGGTGGTGGC
TGAGGGGCGAACGTCGGGCATACCCGGAAAAAATAAGGGCGCAATTGGTA
TTTCTTGTTTTTTAGGAGGTGCGTCCAGGTGGGTGCCTGGTGGTACTGCC
GAGCGCTAGGGCCGAGCATGGGGTTTAGCGTGCAAGTGCGCCACGCAACG
GCTGCAGAAACGTTCCGTCGAGGCACGTCGTCTTTAGTGATTTTGCCCCT
CCTGAGCAGTATTTTTACTTGGTACCTATATCCGAGTCGATCCCCCCGCA
GGTGCAGTGCCGGAGCCAGTCTGCTAATTTTTTTTTCGTTGTCGTTGTTT
GTTCATTCTGCTTTGCTCGGGAAGGGGAGAGAAGGCAGCAACAACCAGGC
CATCAAACAAAACACTCGTATGGTTTCTCCGCCAAGAGGAAGAGGTGGGG
GTTGTGTGTAAAGTGTTACGTGGGACGGAGGGGAGGGGTCACCGATTGTG
CAGAACATGGTACAATATTTTCAGCGCAAGACGGCAAGCCAGAGCTCAAA
TGTGTATGAAATGGAAGCGTGCTTTGCGTTTGCCACGGTCATTGTTGTGC
ATTCTAGAGCTAGAGAGCGGGCGACGTAGCCGAGAAAAGAAAATGGAGAC
AAAAAAACTCGATTGGCTTTCTCAGGACTGACTGCTGTTCTGCACTCATG
TAGGGGTACGGTGTCGGAAGGCAAGGCAGGGAGGTAGGTGTGTCATTGTG
TGCATATTGAATGGGACTTGACTTTGGTGTTTGGTTTTTGTTTGCTGCCG
CCCTTCCCCCCGCGGTGGGGATCGATCAGCTTTCGTTTCCGCGCATGGAC
TGGCTGGGCTCAAAGGTGTGTCGGTGTTCGTGCTACCGCTGCCAATTTGT
TGTTATCTGGGCTGTGTTTTTGTTTTGCGTGGACGATTAGATTACGATGA
GGGGGTAACGGTCTCTGCTTCGCTTGCTCACAACAACACTAATTCCAGCA
TATCTCGAGCTATGTGTCTGAGTACGTCCGTGACTGTACAATTTGTACGT
CGCTCTGTTTTGTACCGCCGCCGCCCCCCCCCCCCCCCCTC
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protein sequence of Ec-27_002110.2

>Ec-27_002110.2 ID=Ec-27_002110.2|Name=Ec-27_002110.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=270bp
MDCNGKGVRGPRPRPVELRSVGPLLQAGQVLQLPAPAQPVRLPQDHQRQR
ERLLPAPPLPPRRAHDPPHHPPIDQGISRPRRCPGLPGVRRHRHRHASAP
GPPQRQRRRQQQQQQQQQQQCIHHERRRRRRQAPEIRDAEPAPRLRVSRR
APVAPPPRSRWRRRRRWRPLSAGAGSPTAAVDIGRPRGHPDRHDSPQQHD
PCEKATAGREQQLGSLPGHSRRRRPCHLRGRPQRRSSGRVAAVAGRLQPL
LFLLLRRDSRQRQRRTGGR*
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mRNA from alignment at chr_27:1818619..1825619+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_002110.2 ID=Ec-27_002110.2|Name=Ec-27_002110.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7001bp|location=Sequence derived from alignment at chr_27:1818619..1825619+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTTTCGGGTACAAGTAGGGGTAGGGCTTTTTGCCTACACCCCGCCACACA
ACAACAACAACAGCAACAGCAGCAGTCACTTCACGGCAACAACGTGCGAC
TCAACCCCCGCTGCAACACAACCGATCTGTTCTTCTCCCTGTGCCTGCCC
TTCTGCGTCTCTCCAGAGCAAGCGCGGCATCCATCGATAATCGAGCAGCA
GCAGCACACACACACACGCACCCAGCGGCGGCGTTCACAAAAGCGAAACA
TGCCTGTGCATAAACTTCTCCACAGGCGAACACCTTCGCCAGTCATGCCC
ACATCATCATCGTCTCGGACACCCAGCAGCAGCACAGCGCCTGCTGCGGC
CGTCGCGGCCCCGACTGTCGCTGCTGCCGCTGCTTCGCCGGCGTCCAAGT
ACCCGCGATTCGGCAAGCGGGGAGCCCCGCAGGCTTTCCCTTCCAAGCTG
TACGAGATTCTGGAGGGCGAGAACCCCGACATCGTGGGATGGACTGCAAC
GGGAAGGGGGTTCGAGGTGAGAGGTGCCTCCGTGTTGGTGTGTGTGTGTA
ATTTGTGTTTGACAGGTTTATGGTGTTGCAACGACATGCCACACGGATAT
ATTATGTACATCCTTCGCCGTCGGACACTGCTGCTGCGCTGTCCCTTTTG
CAGCAGCAGCAGCAGCAGCATCTGCGGTGCTTGCTCGCACGTTGGTGGTG
CTCGGTTACTTACAGGGGTGTTTGCTGCTTGCTGCCGCTGTGCTGATTTG
TTGCTCGTTCTCTCTTCCGCCGATTTTTCGGAATATCTCTTCGAGCGAGC
GATCTGTGACGTCTCTCTCTCTATGCCTTTTTTTTCCGTCTCTCCGTTGT
AGCTCTCTTCTCTGCCGACCGCAAACGAAAACAAGTGCAATGCGCTTGCA
TGCACCGTGCACACCCTCGGGAGTGCGCTCTGTTGGCCATTTTTGCCAAA
GCACGCGTGCCCGTCTACTCAAGCAACGCGCTTTCCTTTCTCGTGCCAGA
CCCGGCCCAAAAAACAATCATTCCTTCTTTTTTAATTTCTCTCCGGCAAC
GACACTGCTGCCAAGCAGCGCTTTAGCAGTTTCTGTTTGGGTTGTCCGAT
TTTTACTTTCTCACGATGCGCGAAGTACTTCAAAACGAATCCATCTGTAT
CTCTATCCATAGATACTGCATAAGACATACGTCCACGATAGATTTGCAAT
CAATCCGTAGCGTCAGCGGAAGCCACCACGATTTCCCGAGCAGCATATAT
CTGTGTGGTCTACAAGACAGCAGTTTGTCCGACAAGTGTTGATTTATTCT
GCGCATTTTTTTACCCACACACACACACGCACCCAAGGGCACTTCACTTC
AGCCAAGCAACGAAGTCTGTGGCATTAATAATCTGCGTACACCAGGGTGT
GCCAGGTGAACCCCACTCCTCTTTTCCGATCGGGGATCTCCACACAACAA
GATGTAGGTGCCAGGCCGCCGGCGGGTGATGCCTCTCTTGTGCTGTTCGC
TCACGAGACTCTCCCCCACTGGTGCTGCTGCGGGTCATTGCACATAACTT
GCGACCGAACACGGACCGCTCTCGCAACGATATGAAGAGAGACCGGTTTA
CACCCGCCAAAGTTGCAACTTTCAACCCTTTTTCTTCTCTTGCAAGAAAC
GAATATTTTTGAGGCTCTTTCTTCATATGTAGAGCGCCTGCCATTGTTGG
CGTCTGTTGGCTTCTTACGCCGCCGGGTCGACTGCGCTGGGTTGGTTGCG
CGCATGCTGTTTGCTGGTGCTGGTGAACGGAGAGGCTGACAGCCATCCTG
TTTCTGCTGTAGACATATTCCCATTTTTGCGCGAAAACAAAAGACAATTC
GCAGCAAGAAAGATCGCTCGTTCTTTTTTTTTTCTTCAGAAATTGAGCCT
TTCTCGGCGGGCGGTTAATTTTTTTCATTTCGGTGCAGTAAGCATACTGG
TGTGTACACGTGCGTATGATAGTATCATGGCTTTATTTTTGCCTTTGTGC
TTGCGACATGGACGGATGGTATCGCGAGATTGTCCCAAAACCCGAGTCTT
GCTGTGCCTACGCACTACCGAAAGAGGAACTGCTATTGTCATGCTGTTTA
TTGTGCTTATTTTTACACATCTACTATGACCAAAATATGTTTGTCCAAGC
GCGTCATTACTTTCTGTACCCCCGCTCCCCTGCGCGCTTCGCTTAAAAAA
TAAGTCCGGCTAGGATACGGAACAGAAAAATTGATGGATTTCTGTCGACG
CAGTGCAAGCGGGCACCATCTCCGGTCATCTCTCACCCTGTGTGCAGTGC
CAAGTTCGTGGCGTTGCCAAGCCTCGTTTGCCTGCTCTCTGATGCGGATT
TTGTCGTTGGGCGGTTGGTGGGTGAACGAGAACATCATGGATCGATGATG
CATCACATTGGGTTGTCTTTGTTGAGACAAGGAAATTCGGTTCTTTGCCT
TCGGTAAGGAGGAGCTTGAAATCGAAATCGAAGGGAGGCACACATTTGAA
AACTCTTTTTTTGCTCTGCCGCTGTATCTGTAGTGCCTGACAGACCCGCC
GCGGTCATGACGCATCCATGTGGTCTCAAGCCAAGCTTGTTGGTCTCATT
GGTCTTGAACGAACATCAACCCCACAGCGGCGGCACTACAAAAAAAAATC
ATCTGCCGAACAGCAGATGGCATCTGCTGAACCTGCTGAACAGCAGGTGA
CATCTGCTGAACAGCAGATCCGGGATAAATTAGCAACGAATACTCCATTG
TAGCGTGAGCGGATACCTGCAAAACCTGTTTCTACAGATTTTTCCATGCA
GCAACGCAGCAATACCTCCTTGTCAACCTTGCTCCACTCGTTCGGTTGCT
GTGCCTCTGGTACGCACCATTTCATTTGTACTTGCTTGCATTCACGCACT
AGTCTCATGCCTCTTGGATGTCGTTGTTGTTCTGACCACCGGCGGCACCC
CATACCGTAACCCCGAACAAATCTCAGGTCCGCGACCACGCCCGGTTGAG
CTCCGAAGTGTTGGGCCGCTTCTTCAAGCAGGACAAGTTCTCCAGCTTCC
AGCGCCAGCTCAACCTGTACGGCTTCCGCAAGATCACCAAAGGCAGCGAG
AGCGGCTCCTACCAGCACCCCCACTTCCGCCGCGGCGAGCGCACGACCCT
CCTCACCATCCGCCGATCGACCAAGGCATCTCCCGCCCGCGTCGCTGTCC
CGGTCTCCCCGGCGTCCGCCGACACCGGCACCGGCACGCCTCCGCCCCCG
GCCCACCTCAACGGCAGCGGCGGCGGCAACAACAACAACAACAACAACAA
CAACAACAATGTATCCACCACGAACGGCGCCGCCGTCGACGACAAGCACC
CGAGATCCGCGACGCCGAGCCCGCCCCCCGCCTCCGTGTCTCGCGGCGCG
CTCCCGTGGCCCCGCCCCCCCGCTCTCGTTGGCGGCGCCGGCGGCGGTGG
CGGCCCCTTTCAGCAGGGGCAGGGTCACCAACAGCAGCCGTCGACATCGG
GCGCCCGCGAGGTCACCCCGATCGGCACGACTCCCCACAACAACACGATC
CCTGCGAAAAGGCAACGGCAGGAAGGGAACAACAGCTGGGGTCCCTACCC
GGACACAGCCGCCGCCGCCGCCCCTGCCACCTCCGTGGGAGGCCACAACG
CCGCAGCTCGGGAAGAGTGGCAGCAGTGGCCGGGCGCCTCCAACCCCTCC
TCTTCCTTCTCCTCCGACGCGACAGCCGCCAACGGCAACGCCGAACAGGA
GGCCGTTAAGGCGCAGGCGCAGTCCGCGCTCGACCAAAACGACGTCGAGG
TTGTGAGCCTGCTGCAGCGGATGGCGAAGGAGGCGCAGGATAGCCCGGCG
CGGAAACGGGTCGCGCTGGCGGCGCAGCAGTGGGAAGGGGCACGGGCTCA
GCAGGCCGCCGCGGGCGAATCCTCTCCCGCGCGACACGCGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAGCAGGCCCGTTTCGAGAAGCCCCGACCGGCG
CCGGCGGGGTCTGACGAAGCCGGGCAAACCCAGCAGATGGTGAGTTGTTA
CCGTAGGGGAGTATTTAGGGAGTGAGTTGTCGTGCCACCAGTTTAAGGGT
GCTTGCGCGTGCTCCACACCTCCTGCTGTGAAATCTGCCAGCTCTCTCCT
TAAACTACGGCCCGCTGTTTTCTTTTCTTGGGGCGCAGGTATTCACCGAG
CGTTTGTACGACATCCTGAGCCACGAGCGCCTTGGTGCCGGCGGCGGCGC
CGCGGCCTCCCAGCAGGCGAGGTTCTTGTCGCTGGCGTTCGGCACGGAGG
GGAGGGCGGCACCTCCAGGGTTCCCGCAGAAGCAGTACCAGCAGCACTAC
CAGGGCGCGGGGCTCCCCTCGCCGTTCGGTTCTACGGCAACGACGGCCTC
GTGTTCTTCTTCCCCCTCTTCCTCCTCGGCGTCGTCCGCGGCGTTTTCGC
ACCTGCCGCTGCCGTCGCAGCTGCAGGAGCAGCCGCGTCGCCGCCAGGAT
CCGTCCGAGTCGGTGGAGTCGACGCACCGGCGGGGCGGCGAGGGTGAGGA
AGGGACAGCAGCAACAGGCGGGATGGTGATGTCGGAGCAAGAACGGCAGG
CTCTTCTCGCGCGCTCGCGGTCGGGGCCTTCGGCCGCCGCCGCCGCCGCC
GTCGCAGCTGCTGAGCAGGACAGACAGGCGCTGCTCGCGCGCCCCCGCAC
CGGCCCGGCCGGCTACTCCCGCGACGACGAGCACCGGTACTACCAGCAGC
AGCAAGACGCCGGCTACATGTACGACCGCAGCCCCGACAGGTCGCCGCTG
GGGAGGGGAGGAGGGTTCTCGTTCGGGAGCGGCAGGTTCGGGTCGGGTGC
GCCGCAGGGCTCTGGCGGTGGCGCGTTGCCGCCGCTCCCAAGCCTCAACT
TCGAGCAGTACAACGTCGGTGGCGGTGGCGGAGGCGGTGGTGGCCCTGTT
GGTGTGGGAGAGATCCGCCGCGCGCCCTGGTACGGACCCGAGTCGTCGTA
CGCGCCTCCGCCAATCGGCAGCTACGTGAACTGATTAGCTCGGTTCTTTC
TGCTTTCGGTGGTGAGGAGAACAGGCTCATCAGCCTTCGTCGCTGGTAGC
ATTGGCACGGCGGGAATAGGGTGGAGATGGATGTCCGATGAGAATGGCGC
TGCTGCCTTTGACACGAGGTTCACGTGTGATGTCGCCCAGAAAATGGGCT
TCTTTCGATTTTCGACTCTGATAAAGGGTTCCAGAGGGGGGAAGGCGAGG
GGGGGGGTATTTTTGCGATGTCAAATGTACCTGCGTGCGTGAAGGGATGG
GTGTGCGCATCCGTGCCAGACACATCGCTGCGGGTTCATAGAGAATAGGG
TAGGAGTAGGTTAAGCGAATCATTTAGGGGCCCCGAAAGGCTTAGTACGT
GGTTTTGTGTCGAGAAATGAACGAACTAGACCTGCGCCTGGGCGAAGAAA
AGGCGACCGAGACAGGGGTCATATGTCTGCAGAAATTGTTGAGTCTGGTG
ATCAGCGAAGAAGGTATATCGTGTCTTGCTGCGGTTGTGTGTTGTGTTGT
GTGTGCGCGCGCGCTCGCGGCACACTCACCAGCTTGTTGTTCCGGCGCGG
CAAAGTAGCGGTGTTGGTTAGCTAAAAGAGCATGCCGTCGTAATCGTAAA
GCAGCGCTGTTTTGTGGTGGTGGTGTTGTCGATTGATGAGAAGGTAGTAA
TTTTCATGGCACTCGGGGCGAAAGTTCGAGAGGTGCTTGCTGGTGTAATT
TTTTGACAGCCTGTCGCCAGCCAGCCTACAGAAAGTTCGAAGAAGAGAAG
CAACACAAAAGCGGAGCCACTGGTAGTTATTGTTTTGGTTCATATTCTCT
TGGTGTTTGGTCTGGTTGTTTGCTCCGGGGGCGTATTGTTTAGACTCGCC
CAGTTCGGATCCTGTGCTACGGTCTGCCAGAAGTTGACACACTTAAGTCT
GGGTGGTGGCTGAGGGGCGAACGTCGGGCATACCCGGAAAAAATAAGGGC
GCAATTGGTATTTCTTGTTTTTTAGGAGGTGCGTCCAGGTGGGTGCCTGG
TGGTACTGCCGAGCGCTAGGGCCGAGCATGGGGTTTAGCGTGCAAGTGCG
CCACGCAACGGCTGCAGAAACGTTCCGTCGAGGCACGTCGTCTTTAGTGA
TTTTGCCCCTCCTGAGCAGTATTTTTACTTGGTACCTATATCCGAGTCGA
TCCCCCCGCAGGTGCAGTGCCGGAGCCAGTCTGCTAATTTTTTTTTCGTT
GTCGTTGTTTGTTCATTCTGCTTTGCTCGGGAAGGGGAGAGAAGGCAGCA
ACAACCAGGCCATCAAACAAAACACTCGTATGGTTTCTCCGCCAAGAGGA
AGAGGTGGGGGTTGTGTGTAAAGTGTTACGTGGGACGGAGGGGAGGGGTC
ACCGATTGTGCAGAACATGGTACAATATTTTCAGCGCAAGACGGCAAGCC
AGAGCTCAAATGTGTATGAAATGGAAGCGTGCTTTGCGTTTGCCACGGTC
ATTGTTGTGCATTCTAGAGCTAGAGAGCGGGCGACGTAGCCGAGAAAAGA
AAATGGAGACAAAAAAACTCGATTGGCTTTCTCAGGACTGACTGCTGTTC
TGCACTCATGTAGGGGTACGGTGTCGGAAGGCAAGGCAGGGAGGTAGGTG
TGTCATTGTGTGCATATTGAATGGGACTTGACTTTGGTGTTTGGTTTTTG
TTTGCTGCCGCCCTTCCCCCCGCGGTGGGGATCGATCAGCTTTCGTTTCC
GCGCATGGACTGGCTGGGCTCAAAGGTGTGTCGGTGTTCGTGCTACCGCT
GCCAATTTGTTGTTATCTGGGCTGTGTTTTTGTTTTGCGTGGACGATTAG
ATTACGATGAGGGGGTAACGGTCTCTGCTTCGCTTGCTCACAACAACACT
AATTCCAGCATATCTCGAGCTATGTGTCTGAGTACGTCCGTGACTGTACA
ATTTGTACGTCGCTCTGTTTTGTACCGCCGCCGCCCCCCCCCCCCCCCCT
C
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Coding sequence (CDS) from alignment at chr_27:1818619..1825619+

>Ec-27_002110.2 ID=Ec-27_002110.2|Name=Ec-27_002110.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=810bp|location=Sequence derived from alignment at chr_27:1818619..1825619+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACTGCAACGGGAAGGGGGTTCGAGGTCCGCGACCACGCCCGGTTGA
GCTCCGAAGTGTTGGGCCGCTTCTTCAAGCAGGACAAGTTCTCCAGCTTC
CAGCGCCAGCTCAACCTGTACGGCTTCCGCAAGATCACCAAAGGCAGCGA
GAGCGGCTCCTACCAGCACCCCCACTTCCGCCGCGGCGAGCGCACGACCC
TCCTCACCATCCGCCGATCGACCAAGGCATCTCCCGCCCGCGTCGCTGTC
CCGGTCTCCCCGGCGTCCGCCGACACCGGCACCGGCACGCCTCCGCCCCC
GGCCCACCTCAACGGCAGCGGCGGCGGCAACAACAACAACAACAACAACA
ACAACAACAATGTATCCACCACGAACGGCGCCGCCGTCGACGACAAGCAC
CCGAGATCCGCGACGCCGAGCCCGCCCCCCGCCTCCGTGTCTCGCGGCGC
GCTCCCGTGGCCCCGCCCCCCCGCTCTCGTTGGCGGCGCCGGCGGCGGTG
GCGGCCCCTTTCAGCAGGGGCAGGGTCACCAACAGCAGCCGTCGACATCG
GGCGCCCGCGAGGTCACCCCGATCGGCACGACTCCCCACAACAACACGAT
CCCTGCGAAAAGGCAACGGCAGGAAGGGAACAACAGCTGGGGTCCCTACC
CGGACACAGCCGCCGCCGCCGCCCCTGCCACCTCCGTGGGAGGCCACAAC
GCCGCAGCTCGGGAAGAGTGGCAGCAGTGGCCGGGCGCCTCCAACCCCTC
CTCTTCCTTCTCCTCCGACGCGACAGCCGCCAACGGCAACGCCGAACAGG
AGGCCGTTAA
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Synonyms
The feature 'Ec-27_002110.2' has the following synonyms
Synonym
Esi0036_0080
Esi_0036_0080