Ec-00_007620.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007620.1
Unique NameEc-00_007620.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length134
Homology
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BLAST of Ec-00_007620.1 vs. uniprot
Match: A0A6H5JEJ7_9PHAE (Septin-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.920e-20
Identity = 77/166 (46.39%), Postives = 92/166 (55.42%), Query Frame = 1 
Query:    1 MKDEMRKR-------EAS------GEKDWRKMPEYRRTIASGKLSILVVVLTVICALLAGIVANP----------------------QLEGSDRILAAADSGGGHLDVLMEVLMEDRKIWTETSDEVQ-DTPPGPEVATIEED-AAKGTDHAPFETEAATWSVGTQ 387
            MKDEM+KR       EA       GEK W    EYR  IASGK SI+ VVL +I   +A I+A                        Q++GSDR++ A DSG   LDVLMEVLM+DRK+WTETS+E Q + P G + ATI +D AAKGTDH     E AT S  TQ
Sbjct:  248 MKDEMKKRYEAFKKQEAKLLVTRIGEKIW----EYRLAIASGKPSIISVVLALIFTFVAVILATTEVNLNEPSTGLADWSEVILKIQQVKGSDRVVTAVDSGEETLDVLMEVLMDDRKMWTETSEEAQREAPSGRKAATIGKDPAAKGTDHPQVPDEPATQSTATQ 409
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BLAST of Ec-00_007620.1 vs. uniprot
Match: D7FUI5_ECTSI (Sept5, septin GTPase, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.670e-15
Identity = 63/130 (48.46%), Postives = 73/130 (56.15%), Query Frame = 1 
Query:    1 MKDEMRKR-EASGEKDWR--------KMPEYRRTIASGKLSILVVVLTVICALLAGIVANPQ----------------------------LEGSDRILAAADSGGGHLDVLMEVLMEDRKIWTETSDEVQ 279
            MKDEMRKR EA   ++ +        K+ EYR  IASGK SIL VVL VICA++A I+A+ Q                            LEGSDRIL A D G   L VLMEVLM+DRKIWTETS+E Q
Sbjct:  255 MKDEMRKRYEAFKTEEAKPLVIVIGEKIREYRHPIASGKPSILFVVLAVICAIVAVILAHTQVHKGYCVNGNEPSTGLADWSEVILKIQQLEGSDRILTAIDPGEEPLYVLMEVLMDDRKIWTETSEEAQ 384
[Close]
BLAST of Ec-00_007620.1 vs. uniprot
Match: D8LDE5_ECTSI (Sept2, septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE5_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.260e-6
Identity = 40/91 (43.96%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:   61 EYRRTIASGKLSILVVVLTVICALLAGIVANPQL-------------------------EGSDRILAAADSGGGHLDVLMEVLMEDRKIWT 258
            EYR  IASGK S ++VVL VI A +A I+A  Q+                         EGSDRI+   DS    LDVLM+VLM++RKIWT
Sbjct:  332 EYRLAIASGKPSTILVVLAVIFAFVAVILAATQVHAVNGNEPSTGLADWRELILKIQQVEGSDRIVTTVDSEEETLDVLMKVLMDNRKIWT 422
The following BLAST results are available for this feature:
BLAST of Ec-00_007620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEJ7_9PHAE3.920e-2046.39Septin-type G domain-containing protein n=1 Tax=Ec... [more]
D7FUI5_ECTSI3.670e-1548.46Sept5, septin GTPase, incomplete sequence n=1 Tax=... [more]
D8LDE5_ECTSI1.260e-643.96Sept2, septin GTPase n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12150784..12152351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D7FUI5
Length458
KEGG koko:K16944
Hectar predicted targeting categorysignal anchor
Gene idEc-00_007620.1
EggNOG free text desc.ATPase. Has a role at an early stage in the morphogenesis of the spore coat
EggNOG OGsCOG5019@1,KOG1547@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007620Ec-00_007620Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12150784..12152351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007620.1Ec-00_007620.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12150784..12151961 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007620.1.5Ec-00_007620.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12150784..12150852 -
Ec-00_007620.1.4Ec-00_007620.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12150897..12151004 -
Ec-00_007620.1.3Ec-00_007620.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12151196..12151315 -
Ec-00_007620.1.2Ec-00_007620.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12151857..12151994 -
Ec-00_007620.1.1Ec-00_007620.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12152329..12152351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007620.1CDS:Ec-00_007620.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12150784..12150852 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0076205UTR:Ec-00_007620.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 12151962..12151994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007620.1 ID=Ec-00_007620.1|Name=Ec-00_007620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=134bp
MPEYRRTIASGKLSILVVVLTVICALLAGIVANPQLEGSDRILAAADSGG
GHLDVLMEVLMEDRKIWTETSDEVQDTPPGPEVATIEEDAAKGTDHAPFE
TEAATWSVGTQGGVSGGHEGAEWSPIRWRSRRD*
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spliced messenger RNA

>Ec-00_007620.1 ID=Ec-00_007620.1|Name=Ec-00_007620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=458bp|location=Sequence derived from alignment at chr_00:12150784..12152351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGACGAGATGAGGAAGCGGCGAAGCCTCTGGTGAAAAAGATTGGA
GAAAACATGCCAGAGTATCGTCGAACAATTGCCAGCGGCAAGTTGTCGAT
TCTCGTTGTGGTGCTGACGGTGATATGCGCGTTGCTGGCGGGGATTGTGG
CAAACCCTCAGCTCGAAGGATCGGACCGCATCTTGGCGGCGGCAGACTCC
GGGGGGGGACACCTGGACGTCCTTATGGAGGTGCTGATGGAGGATCGCAA
GATTTGGACGGAAACTTCCGACGAGGTGCAGGACACACCACCAGGTCCAG
AAGTCGCGACAATCGAAGAAGACGCGGCAAAGGGTACGGACCACGCTCCG
TTTGAGACGGAAGCAGCGACTTGGTCTGTCGGCACACAAGGAGGAGTCTC
TGGAGGACACGAAGGAGCCGAATGGTCCCCAATCCGCTGGCGATCAAGAA
GAGACTGA
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protein sequence of Ec-00_007620.1

>Ec-00_007620.1 ID=Ec-00_007620.1|Name=Ec-00_007620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=134bp
MPEYRRTIASGKLSILVVVLTVICALLAGIVANPQLEGSDRILAAADSGG
GHLDVLMEVLMEDRKIWTETSDEVQDTPPGPEVATIEEDAAKGTDHAPFE
TEAATWSVGTQGGVSGGHEGAEWSPIRWRSRRD*
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mRNA from alignment at chr_00:12150784..12152351-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007620.1 ID=Ec-00_007620.1|Name=Ec-00_007620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1568bp|location=Sequence derived from alignment at chr_00:12150784..12152351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGGACGAGATGAGGAAGCGCTATGAAGCCTTCAGGAGGGAAGAGGT
TTGAGCCTGCTGAAGAAGTTGCAGCTACTCGAGTTCCTCGTAGTTGTCTT
CGGGCAATCTTTGGAGGCTTCGTTTCACAACATCGGTAAATTCAATTCGG
CATGAATGATCACCACCAAATGGGTGACAACTGTTGGACACTACTTCAAT
CAATAGGTTTATCGACGGTCGAACAGAGCTACTGCAGCTAGGGAACAGGG
GGGTCGACGTTTCTACGGTGCTAACATTGGTTACGTCTCAACTAGAATGT
TCGTGTCGTTATACTCATCCTCCTCACTCCCCCTGACACTGCATCATGGT
CTTGCAGGCGAAGCCTCTGGTGAAAAAGATTGGAGAAAACATGCCAGAGT
ATCGTCGAACAATTGCCAGCGGCAAGTTGTCGATTCTCGTTGTGGTGCTG
ACGGTGATATGCGCGTTGCTGGCGGGGATTGTGGCAAACCCTCAGGTATA
GGGGGTGCTATGTAGAGATCCGCCCGGTGTGGCGGGTGCATGCCTTGAGT
GCAGCCTAGATGGCTGCTTCGTTAGATGTGGGTAACCTATGGTCCGTGGT
ATAAAAATTTTCATCATGTACATGTAGCGGCGTTGGCGTCTCCATTGCGA
CTTCATTCTCGGTTAGAGACACAGAACCTGAAGGTCGAAGATGTCGTTGC
AACCCCAACATACCGTTTTTGTCAGGGTTATTGGGTGAAGCACTCACGTT
GCCTGGATGGAGTCGAGCCCTCCATGGGCGAGGCCGGCTGGAGCGAAGTC
ATGCTCACGATTCAACGAGTGAGTGGCGTGCTGCAACAGGGACCCTTCAG
TGTATGATGCCCTCCCGAGATCGTTTACGCGTGGTAACGATCACGTCGCG
AACCAACGACAGAAACGTCTTCCCATCCACAATGTGCAAAGCCCAGCAGC
GCTTCACGTAGGCCCGCGTATTTTACAGCTTCCGATCCCATGTTGGTCTT
TAGTTATCGCTCGCGTCGGTGCCAAATTTGACACAGCTCGAAGGATCGGA
CCGCATCTTGGCGGCGGCAGACTCCGGGGGGGGACACCTGGACGTCCTTA
TGGAGGTGCTGATGGAGGATCGCAAGATTTGGACGGAAACTTCCGACGAG
GTGCAGGTCGGTCTGACCATCTCTTCTCAGAATATCACGGTTTTTGTGAT
TGCGGAACGTGGAGAGGGGGGTGCGGATAGAAGGTACGGTGATCACGTTC
ATCGGATACTCCCGACAAGAACGAAAACGAGCGATTTCCGCGTTATTCCT
GTCTTCGCCGTTGCTCCTTCGTCTACATGCCTCGTATCCATATACAGGAC
ACACCACCAGGTCCAGAAGTCGCGACAATCGAAGAAGACGCGGCAAAGGG
TACGGACCACGCTCCGTTTGAGACGGAAGCAGCGACTTGGTCTGTCGGCA
CACAAGTGAGTGATTCCACCACGATACCCGACGATGTTCCTTTGGAAAGG
GAGGAGTCTCTGGAGGACACGAAGGAGCCGAATGGTCCCCAATCCGCTGG
CGATCAAGAAGAGACTGA
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Coding sequence (CDS) from alignment at chr_00:12150784..12152351-

>Ec-00_007620.1 ID=Ec-00_007620.1|Name=Ec-00_007620.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=402bp|location=Sequence derived from alignment at chr_00:12150784..12152351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCAGAGTATCGTCGAACAATTGCCAGCGGCAAGTTGTCGATTCTCGT
TGTGGTGCTGACGGTGATATGCGCGTTGCTGGCGGGGATTGTGGCAAACC
CTCAGCTCGAAGGATCGGACCGCATCTTGGCGGCGGCAGACTCCGGGGGG
GGACACCTGGACGTCCTTATGGAGGTGCTGATGGAGGATCGCAAGATTTG
GACGGAAACTTCCGACGAGGTGCAGGACACACCACCAGGTCCAGAAGTCG
CGACAATCGAAGAAGACGCGGCAAAGGGTACGGACCACGCTCCGTTTGAG
ACGGAAGCAGCGACTTGGTCTGTCGGCACACAAGGAGGAGTCTCTGGAGG
ACACGAAGGAGCCGAATGGTCCCCAATCCGCTGGCGATCAAGAAGAGACT
GA
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Synonyms
The feature 'Ec-00_007620.1' has the following synonyms
Synonym
Esi0564_0004
Esi_0564_0004
Sept8ps