Ec-00_007580.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
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Overview
Homology
BLAST of Ec-00_007580.1 vs. uniprot
Match: D7G4F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F1_ECTSI) HSP 1 Score: 890 bits (2301), Expect = 0.000e+0 Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 1
Query: 1 MVYAAIRGRPQHRGGRGLRFLRGENNNPGSVVNSPTSWPGSDFKLEGFQAGSVYLWACGERDQDDGEAPVTVPEAVAAWVILLTQAICYARLWYVGGNEFTDSDTSSETIDYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPISPIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVALVIACRSFRELYRAFTRGAERFSATDKRRRFYLFWAGMVVQLLWVTLDAISFSLSDDDEDDDSHFFPDSVYSPAVNAIITLDTLVLWLFIRGGFVEWD 1326
MVYAAIRGRPQHRGGRGLRFLRGENNNPGSVVNSPTSWPGSDFKLEGFQAGSVYLWACGERDQDDGEAPVTVPEAVAAWVILLTQAICYARLWYVGGNEFTDSDTSSETIDYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPISPIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVALVIACRSFRELYRAFTRGAERFSATDKRRRFYLFWAGMVVQLLWVTLDAISFSLSDDDEDDDSHFFPDSVYSPAVNAIITLDTLVLWLFIRGGFVEWD
Sbjct: 1 MVYAAIRGRPQHRGGRGLRFLRGENNNPGSVVNSPTSWPGSDFKLEGFQAGSVYLWACGERDQDDGEAPVTVPEAVAAWVILLTQAICYARLWYVGGNEFTDSDTSSETIDYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPISPIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVALVIACRSFRELYRAFTRGAERFSATDKRRRFYLFWAGMVVQLLWVTLDAISFSLSDDDEDDDSHFFPDSVYSPAVNAIITLDTLVLWLFIRGGFVEWD 442
BLAST of Ec-00_007580.1 vs. uniprot
Match: A0A6H5JP75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP75_9PHAE) HSP 1 Score: 449 bits (1155), Expect = 1.100e-151 Identity = 257/402 (63.93%), Postives = 291/402 (72.39%), Query Frame = 1
Query: 82 PGSVVNSPTSWPGSDFKLEGFQAGSVYLWACGERDQDDGEAPVTVPEAVAAWVILLTQAICYARLWYVGGNEFTDSDTSSETIDYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPISPIHVRRFHDRPCQWSMFSLLALCWVSMPYFWRWTIVYALVIVLFVVVVALVIACRSFRELYRAFTRGAERFSATDKRRRFYLFWAGMVVQLLWVTLDAISFSLSDDDEDDDSHFFPDSVYSPAVNAIITLDTLV 1287
P + V P +W A V +C E++ + G AICYA LWYVGGN+FT+ DTSSET+DYS+LAIAVSMYLLLSIAVADLCGG ALVVEGRGSGD+FVWFTGRRLFGVFLV T LTLIGASVRVLFFSS+DNV LVIGAAAVLFIADVDEKAHTVLKN SGK RL WVLE+IGMSFVLATFS+KAT N GRVAG++ ++ CA W G+DC IFTW YIF ELPLTVTV + E HV LLALCWVSMPYF+RW I+ A+ IVLFVVVVA+VIA RSFRELYRAFT+GAERF+ATDKRRRFYLFWAG+VVQLL V L A+ FSLSD+D+ F +S++S A +AI LD LV
Sbjct: 31 PTATVGVPPAWSMPQSAGAASNAAGVGQVSCEEKNDNPGSV-----------------AICYAGLWYVGGNQFTEGDTSSETVDYSILAIAVSMYLLLSIAVADLCGGSALVVEGRGSGDDFVWFTGRRLFGVFLVVTFLTLIGASVRVLFFSSQDNVTLVIGAAAVLFIADVDEKAHTVLKNFSGKSRLCWVLEIIGMSFVLATFSLKATDNYGRVAGKDAYKSDCAGW--GNDCGIFTWQYIFFELPLTVTVSRPTLAME--------HV-------------LLLALCWVSMPYFFRWIILLAVAIVLFVVVVAVVIARRSFRELYRAFTQGAERFTATDKRRRFYLFWAGIVVQLLRVALTAMYFSLSDNDQ----LVFSESIFS-AEDAISFLDALV 387
BLAST of Ec-00_007580.1 vs. uniprot
Match: A0A6H5KBY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY2_9PHAE) HSP 1 Score: 196 bits (497), Expect = 9.010e-56 Identity = 111/200 (55.50%), Postives = 137/200 (68.50%), Query Frame = 1
Query: 28 PQHRGGRGLRFLRGENNNPGSVVNSPTSWPGSDFKLEGFQAGSVYLWACGERDQDDGEAPVTVPEAVAAWVILLTQAICYARLWYVGGNEF-TDSDTSS--------ETIDYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADV 600
P H GRG NN PG++ +P WPG DF+L+ SVYLWACGER + D PV+ EAVAAWV+L++QA+CYA LW + GN+ T S TS+ + DYS+LAIA +MYLLL+I ADL GGCAL +EG GS D F W T RR FGV ++ T + LIGAS+RVLF+SS +N+ LVIGAAAVLFIADV
Sbjct: 91 PVHTVGRGHDASEA-NNRPGTLTATP--WPGKDFRLKKVLPDSVYLWACGERGEGDAPYPVSRSEAVAAWVVLISQAVCYAGLWVITGNQPPTQSQTSAIDDDFYADRSPDYSILAIAGAMYLLLTIVAADLWGGCALCLEGLGSAD-FAWCTRRRAFGVCMLGTFVALIGASIRVLFYSSFENMELVIGAAAVLFIADV 286 The following BLAST results are available for this feature:
BLAST of Ec-00_007580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_007580.1 ID=Ec-00_007580.1|Name=Ec-00_007580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=443bpback to top spliced messenger RNA >Ec-00_007580.1 ID=Ec-00_007580.1|Name=Ec-00_007580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1329bp|location=Sequence derived from alignment at chr_00:12077727..12079932- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGGTCTACGCCGCAATCCGCGGGCGCCCCCAGCACCGCGGCGGGCGTGGback to top protein sequence of Ec-00_007580.1 >Ec-00_007580.1 ID=Ec-00_007580.1|Name=Ec-00_007580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=443bp MVYAAIRGRPQHRGGRGLRFLRGENNNPGSVVNSPTSWPGSDFKLEGFQAback to top mRNA from alignment at chr_00:12077727..12079932- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_007580.1 ID=Ec-00_007580.1|Name=Ec-00_007580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2206bp|location=Sequence derived from alignment at chr_00:12077727..12079932- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:12077727..12079932- >Ec-00_007580.1 ID=Ec-00_007580.1|Name=Ec-00_007580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1329bp|location=Sequence derived from alignment at chr_00:12077727..12079932- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_007580.1' has the following synonyms
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