Ec-00_007570.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_007570.2
Unique Name	Ec-00_007570.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	121

Homology

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 5.080e-80
Identity = 131/151 (86.75%), Postives = 135/151 (89.40%), Query Frame = -1

Query:  478 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPGRAAQDTSASDKRRVYAHLMAKSK*LVGDVMRSVPLHQALSVQDKVGDFLRYLLNSSAGGTGVQNPGEAPKKGRPKKDGRRQPLQHDRGPKRNP 930
            NRWRRRE   DSPWSISSVLSSSGHSVGWDG+DEG DE YWGPTCDEAVDGIHPA PGRAAQD SASDKRRVYAHLMA SK LVGD+MRSVPLHQALSVQDKVG++LRYLLNSSAG TGVQNPGEAPKKG PKKDGRRQPLQH  G K  P
Sbjct:  329 NRWRRREVVNDSPWSISSVLSSSGHSVGWDGNDEGRDEKYWGPTCDEAVDGIHPAGPGRAAQDRSASDKRRVYAHLMATSKELVGDIMRSVPLHQALSVQDKVGEYLRYLLNSSAGSTGVQNPGEAPKKGWPKKDGRRQPLQHRSGAKEEP 479

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 8.400e-79
Identity = 136/168 (80.95%), Postives = 144/168 (85.71%), Query Frame = -1

Query:  436 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPGRAAQDTSASDKRRVYAHLMAKSK*LVGDVMRSVPLHQALSVQDKVGDFLRYLLNSSAGGTGVQNPGEAPKKGRPKKDGRRQPLQHDRGPKR---NPETRRGSKESLVKPR 930
            NRWRRREDG DSPWSISS+LSSSGH VGWDGHDEG DE+YWGPTCDEAVDGIHP EPG  AQD SASDKRRVYAHLMAKSK LVGD+MRSVPLHQALSVQDKVG++LRYLLNSSAGGTG QNPGEAPKKGRPKKDGRRQPLQH  G K    NPE ++G      + R
Sbjct: 1239 NRWRRREDGNDSPWSISSLLSSSGHGVGWDGHDEGRDESYWGPTCDEAVDGIHPTEPGGGAQDRSASDKRRVYAHLMAKSKELVGDIMRSVPLHQALSVQDKVGEYLRYLLNSSAGGTGAQNPGEAPKKGRPKKDGRRQPLQHRSGAKEEPGNPEGQQGKSRQTKRMR 1406

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 5.330e-74
Identity = 128/151 (84.77%), Postives = 134/151 (88.74%), Query Frame = -1

Query:  478 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPGRAAQDTSASDKRRVYAHLMAKSK*LVGDVMRSVPLHQALSVQDKVGDFLRYLLNSSAGGTGVQNPGEAPKKGRPKKDGRRQPLQHDRGPKRNP 930
            NRWRRREDG DS W+ISSVLSSSGH VGWDGHDEG DENYWGPTCDE VDGIHP EPGRAAQD S  DKRRVYAHL+ KSK LVGD++RSVPLHQALSVQDKVG++LRYLLNSSAGGT VQNPGEAPKKGRPKKDGRRQPLQH  G K  P
Sbjct: 1016 NRWRRREDGNDSSWTISSVLSSSGHCVGWDGHDEGRDENYWGPTCDEVVDGIHPTEPGRAAQDRS--DKRRVYAHLIVKSKELVGDIVRSVPLHQALSVQDKVGEYLRYLLNSSAGGTVVQNPGEAPKKGRPKKDGRRQPLQHRSGAKEEP 1164

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.200e-52
Identity = 97/139 (69.78%), Postives = 113/139 (81.29%), Query Frame = -1

Query:  520 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPG-RAAQDTSASDKRRVYAHLMAKSK*LVGDVMRSVPLHQALSVQDKVGDFLRYLLNSSAGGT-GVQNPGEAPKKGRPKKDGR 930
            NRWR+ +DGK  PWS+S VLSSSGH  GWDGH +GSD++ WGPTCD++ DG HPAE   RAAQ+ SA+D RR YAHLMAKSK  VGDVMRSVPLHQALSVQ K+ DFL YLL  +AGGT G +N G+APKKGRPK+DG+
Sbjct:  360 NRWRQSDDGKVLPWSVSLVLSSSGHGEGWDGHHQGSDDHCWGPTCDQSFDGAHPAERAVRAAQEKSAADNRRFYAHLMAKSKENVGDVMRSVPLHQALSVQVKIDDFLGYLLKETAGGTEGPKNLGQAPKKGRPKEDGK 498

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.450e-50
Identity = 96/139 (69.06%), Postives = 110/139 (79.14%), Query Frame = -1

Query:  520 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPG-RAAQDTSASDKRRVYAHLMAKSK*LVGDVMRSVPLHQALSVQDKVGDFLRYLLNSSAGGTG-VQNPGEAPKKGRPKKDGR 930
            NRWR+ +DGK  PWS+S VLSSSGH  GWDGH +G D + WGPTCDE+ DG HPAE   RAAQD SA DKRRVYAHLMAK K  VGD++RSVPLHQALSVQ KV +FL YLL  +AG TG  +NPG+AP KGRP+KDG+
Sbjct:  474 NRWRQSDDGKVLPWSVSLVLSSSGHGEGWDGHRQGCDAHCWGPTCDESFDGAHPAERAVRAAQDRSAGDKRRVYAHLMAKGKENVGDIIRSVPLHQALSVQVKVDNFLGYLLKETAGDTGGPKNPGQAPTKGRPEKDGK 612

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.270e-33
Identity = 65/73 (89.04%), Postives = 66/73 (90.41%), Query Frame = -1

Query:  712 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPGRAAQDTSASDKRRVY 930
            NRWRRR+DGKD PWSISSVLSSSGH VGWDGHDE  DENYWGPTCDEAVDGIHP  PGRAAQDTSASDKRR Y
Sbjct:  606 NRWRRRKDGKDLPWSISSVLSSSGHGVGWDGHDEVRDENYWGPTCDEAVDGIHPTGPGRAAQDTSASDKRRAY 678

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.890e-29
Identity = 63/136 (46.32%), Postives = 93/136 (68.38%), Query Frame = -1

Query:  529 RWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDE--AVDGIHPAE-PGRAAQDTSASDKRRVYAHLMAKSK*LVGDVMRSVPLHQALSVQDKVGDFLRYLLNSSAGGTGVQNPGEAPKKGRPKK 927
            RWR+  DG D PW++S VL  +GH  GWDG +EG+D+N+WGPT D+  A DG+HP+E   +AA   SA+D+RRV+A +MAKSK  V +++R+VP  +A+ +Q  +  ++R+ L  + G    +NP +  K GRPKK
Sbjct:  403 RWRQSLDGNDEPWTVSRVLKETGHGDGWDGCEEGADDNFWGPTFDDDDAGDGVHPSERAAKAAAARSATDERRVFASMMAKSKENVSEILRTVPHAKAMEIQADLDKWVRFQLAEATGQNSAKNPAQVKKAGRPKK 538

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.780e-18
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = -1

Query:  742 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAVDGIHPAEPG-RAAQD 930
            NRWR+ +DGK  PWS+S VLSSSGH  GWDGH +GSD++ WGPTCDE+ DG HPAE   RAAQD
Sbjct:  631 NRWRQSDDGKVLPWSVSFVLSSSGHGEGWDGHHQGSDDHCWGPTCDESFDGAHPAERAVRAAQD 694

[Close]

BLAST of Ec-00_007570.2 vs. uniprot
Match: A0A6H5KTX9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.020e-11
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = -1

Query:  721 NRWRRREDGKDSPWSISSVLSSSGHSVGWDGHDEGSDENYWGPTCDEAV--DGIHPAEPGRAAQDTSASDKR 930
            NRWR+   G D PWS+SSVL  +G   GWDG DEG D+NY GPT D+    +G+HPAE    A +  A D+R
Sbjct:  271 NRWRKSPGGNDDPWSVSSVLQQAGLGKGWDGRDEGLDDNYEGPTFDDDYGGEGVHPAEREGRATERKACDQR 342

The following BLAST results are available for this feature:

BLAST of Ec-00_007570.2 vs. uniprot

BLAST of Ec-00_007570.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9


Match Name	E-value	Identity	Description
A0A6H5L372_9PHAE	5.080e-80	86.75	SWIM-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K9T1_9PHAE	8.400e-79	80.95	SWIM-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KBY4_9PHAE	5.330e-74	84.77	SWIM-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JXC0_9PHAE	1.200e-52	69.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBV0_9PHAE	1.450e-50	69.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB76_9PHAE	1.270e-33	89.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JY17_9PHAE	2.890e-29	46.32	SWIM-type domain-containing protein n=3 Tax=Ectoca...	[more]
A0A6H5KWM8_9PHAE	4.780e-18	68.75	MULE domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5KTX9_9PHAE	1.020e-11	51.39	SWIM-type domain-containing protein n=1 Tax=Ectoca...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:12062390..12063321 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	932
Hectar predicted targeting category	mitochondrion
Gene id	Ec-00_007570.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_007570	Ec-00_007570	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 12062390..12063321 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007570.2.1	Ec-00_007570.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 12062390..12063321 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007570	3UTR:Ec-00_007570.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 12062390..12062456 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007570.2	CDS:Ec-00_007570.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 12062457..12062819 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007570	5UTR:Ec-00_007570.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 12062820..12063321 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007570.2	Ec-00_007570.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 12062457..12062819 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:12062390..12063321-
coding sequence from alignment at chr_00:12062390..12063321-

mRNA sequence

>Ec-00_007570.2 ID=Ec-00_007570.2|Name=Ec-00_007570.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=121bp
MLKRLSSTVLFRPPLLGSLSRILDACASRGRVEKIPEKVPNLVLDGQRLM
QGHGPHYISYKLLALRHQMGVDSTLVGSACILRGAPRFSRMYAIHRFIAC
RSPVVLVAAFVMAVPPYAVA*

spliced messenger RNA

>Ec-00_007570.2 ID=Ec-00_007570.2|Name=Ec-00_007570.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=932bp|location=Sequence derived from alignment at chr_00:12062390..12063321- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TAGACTACATCAAGTACGTAAATACGTCCATCATCGCTGCGCTGCAAGTA
GCGATGCAAAAGTAGACGGAGCGCAAGCAGGAAGGTTGTTGCCCACAGGT
TAAACCCGTTGGAACCTCCAGTTGCGGTCATGAGCGTTCGGTTGTGTCTC
GCCACACGAACCAAGTAGTTCATGACGGATTGTAGCCAGCCGCAGCCAAG
GCATGGCTCCCTGCTGTCCCCGATTTTTGGTGTCTCGTATATTCCAGGAA
CCCTCTTTCGTTACGCCGATTTCGTTACCCCCCGGAACACGGACATTCTA
ATATGCCCCCCAACTCTCTGAAAAGGACACGTGGGGAATACCGTGGAAAT
CGTGTGGATCAAATTCCAGTGCTGTTCTGCTACGCGTGTTTACTCCTCTT
CGTCGACCGGCGCCCGTTGTTGAAATCCCTTATCCTCTTGGTTTGACGAG
ACTTTCCTTGCTGCCCCTCCGGGTTTCCGGGTTCCTCTTTGGCCCCCGAT
CGATGCTGAAGAGGTTGTCTTCTACCGTCCTTTTTCGGCCTCCCCTTCTT
GGGAGCCTCTCCAGGATTTTGGACGCCTGTGCCTCCCGCGGACGAGTTGA
GAAGATACCGGAGAAAGTCCCCAACCTTGTCCTGGACGGACAGCGCTTGA
TGCAGGGGCACGGACCTCATTACATCTCCTACAAGCTACTTGCTCTTCGC
CATCAGATGGGCGTAGACTCGACGCTTGTCGGAAGCGCTTGTATCCTGCG
CGGCGCGCCCCGGTTCAGCAGGATGTATGCCATCCACCGCTTCATCGCAT
GTCGGTCCCCAGTAGTTCTCGTCGCTGCCTTCGTCATGGCCGTCCCACCC
TACGCTGTGGCCTGACGACGACAGCACCGATGAGATGCTCCACGGCGAAT
CTTTGCCATCTTCTCTTCGACGCCAACGGTTG

protein sequence of Ec-00_007570.2

>Ec-00_007570.2 ID=Ec-00_007570.2|Name=Ec-00_007570.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=121bp
MLKRLSSTVLFRPPLLGSLSRILDACASRGRVEKIPEKVPNLVLDGQRLM
QGHGPHYISYKLLALRHQMGVDSTLVGSACILRGAPRFSRMYAIHRFIAC
RSPVVLVAAFVMAVPPYAVA*

mRNA from alignment at chr_00:12062390..12063321-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_007570.2 ID=Ec-00_007570.2|Name=Ec-00_007570.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=932bp|location=Sequence derived from alignment at chr_00:12062390..12063321- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TAGACTACATCAAGTACGTAAATACGTCCATCATCGCTGCGCTGCAAGTA
GCGATGCAAAAGTAGACGGAGCGCAAGCAGGAAGGTTGTTGCCCACAGGT
TAAACCCGTTGGAACCTCCAGTTGCGGTCATGAGCGTTCGGTTGTGTCTC
GCCACACGAACCAAGTAGTTCATGACGGATTGTAGCCAGCCGCAGCCAAG
GCATGGCTCCCTGCTGTCCCCGATTTTTGGTGTCTCGTATATTCCAGGAA
CCCTCTTTCGTTACGCCGATTTCGTTACCCCCCGGAACACGGACATTCTA
ATATGCCCCCCAACTCTCTGAAAAGGACACGTGGGGAATACCGTGGAAAT
CGTGTGGATCAAATTCCAGTGCTGTTCTGCTACGCGTGTTTACTCCTCTT
CGTCGACCGGCGCCCGTTGTTGAAATCCCTTATCCTCTTGGTTTGACGAG
ACTTTCCTTGCTGCCCCTCCGGGTTTCCGGGTTCCTCTTTGGCCCCCGAT
CGATGCTGAAGAGGTTGTCTTCTACCGTCCTTTTTCGGCCTCCCCTTCTT
GGGAGCCTCTCCAGGATTTTGGACGCCTGTGCCTCCCGCGGACGAGTTGA
GAAGATACCGGAGAAAGTCCCCAACCTTGTCCTGGACGGACAGCGCTTGA
TGCAGGGGCACGGACCTCATTACATCTCCTACAAGCTACTTGCTCTTCGC
CATCAGATGGGCGTAGACTCGACGCTTGTCGGAAGCGCTTGTATCCTGCG
CGGCGCGCCCCGGTTCAGCAGGATGTATGCCATCCACCGCTTCATCGCAT
GTCGGTCCCCAGTAGTTCTCGTCGCTGCCTTCGTCATGGCCGTCCCACCC
TACGCTGTGGCCTGACGACGACAGCACCGATGAGATGCTCCACGGCGAAT
CTTTGCCATCTTCTCTTCGACGCCAACGGTTG

Coding sequence (CDS) from alignment at chr_00:12062390..12063321-

>Ec-00_007570.2 ID=Ec-00_007570.2|Name=Ec-00_007570.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=363bp|location=Sequence derived from alignment at chr_00:12062390..12063321- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGAAGAGGTTGTCTTCTACCGTCCTTTTTCGGCCTCCCCTTCTTGG
GAGCCTCTCCAGGATTTTGGACGCCTGTGCCTCCCGCGGACGAGTTGAGA
AGATACCGGAGAAAGTCCCCAACCTTGTCCTGGACGGACAGCGCTTGATG
CAGGGGCACGGACCTCATTACATCTCCTACAAGCTACTTGCTCTTCGCCA
TCAGATGGGCGTAGACTCGACGCTTGTCGGAAGCGCTTGTATCCTGCGCG
GCGCGCCCCGGTTCAGCAGGATGTATGCCATCCACCGCTTCATCGCATGT
CGGTCCCCAGTAGTTCTCGTCGCTGCCTTCGTCATGGCCGTCCCACCCTA
CGCTGTGGCCTGA

Synonyms

The feature 'Ec-00_007570.2' has the following synonyms


Synonym
Esi561_0016
Esi_561_0016