Ec-00_007540.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_007540.1
Unique Name	Ec-00_007540.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	139

Homology

The following BLAST results are available for this feature:

BLAST of Ec-00_007540.1 vs. uniprot

BLAST of Ec-00_007540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:12039595..12045097 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	638
Hectar predicted targeting category	other localisation
Gene id	Ec-00_007540.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_007540	Ec-00_007540	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 12039595..12045097 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007540.1.1	Ec-00_007540.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 12039595..12040033 +
Ec-00_007540.1.2	Ec-00_007540.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 12044899..12045097 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007540	5UTR:Ec-00_007540.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 12039595..12039815 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007540.1	CDS:Ec-00_007540.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 12039816..12040033 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007540.1	Ec-00_007540.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 12039816..12045097 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:12039595..12045097+
coding sequence from alignment at chr_00:12039595..12045097+

mRNA sequence

>Ec-00_007540.1 ID=Ec-00_007540.1|Name=Ec-00_007540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=139bp
MARRNEEYARLNPGGGYTQALTLGKGFSGAERSAAKQGAGNKGSSGGSRS
GTRSGGTMNAFAQHQELIRNYHRYHLNAEVPSSGAIEAKGLPGQRRLTDE
EALRRQHRFVRDHNEDSRAQQARWKILTSDWGRKQNRA*

spliced messenger RNA

>Ec-00_007540.1 ID=Ec-00_007540.1|Name=Ec-00_007540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=638bp|location=Sequence derived from alignment at chr_00:12039595..12045097+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CAGACCAAAGGCGGTGCGCGGGCAGGAGTGAGCAACCGAAAAAATGCGCT
CTGCTCGGTCGTGATTAATTATCCTGCCTCTGTGCCATTTGGCAGGCTGC
ACCCAGAAAGCGCTGTGTATAGCAATATTACAATTGGTACTTCTTCACGT
CACGGAGAGGTTACAGTACCAGCAGGTACCACATCAAGTAGCATACAAGT
AGCAGTGTACCTACGAGGCAAATGGCTCGACGAAATGAGGAGTACGCTCG
CCTCAACCCCGGAGGTGGCTACACGCAAGCTTTAACTCTCGGCAAGGGGT
TCTCGGGTGCCGAGAGGAGTGCTGCAAAGCAAGGCGCCGGTAATAAGGGC
AGCAGCGGCGGCAGCAGGAGCGGCACCAGGAGCGGGGGTACGATGAACGC
CTTTGCCCAACACCAGGAGCTGATCCGTAACTATCACAGGTACCACCTCA
ACGCGGAGGTGCCATCATCAGGAGCGATAGAGGCCAAGGGGTTGCCAGGG
CAAAGGCGTTTGACTGACGAAGAGGCCTTGCGGCGGCAACACCGCTTCGT
GCGCGATCACAACGAGGACAGCCGGGCACAGCAGGCAAGATGGAAAATAC
TGACATCGGATTGGGGGAGAAAGCAAAACAGAGCATGA

protein sequence of Ec-00_007540.1

>Ec-00_007540.1 ID=Ec-00_007540.1|Name=Ec-00_007540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=139bp
MARRNEEYARLNPGGGYTQALTLGKGFSGAERSAAKQGAGNKGSSGGSRS
GTRSGGTMNAFAQHQELIRNYHRYHLNAEVPSSGAIEAKGLPGQRRLTDE
EALRRQHRFVRDHNEDSRAQQARWKILTSDWGRKQNRA*

mRNA from alignment at chr_00:12039595..12045097+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_007540.1 ID=Ec-00_007540.1|Name=Ec-00_007540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5503bp|location=Sequence derived from alignment at chr_00:12039595..12045097+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CAGACCAAAGGCGGTGCGCGGGCAGGAGTGAGCAACCGAAAAAATGCGCT
CTGCTCGGTCGTGATTAATTATCCTGCCTCTGTGCCATTTGGCAGGCTGC
ACCCAGAAAGCGCTGTGTATAGCAATATTACAATTGGTACTTCTTCACGT
CACGGAGAGGTTACAGTACCAGCAGGTACCACATCAAGTAGCATACAAGT
AGCAGTGTACCTACGAGGCAAATGGCTCGACGAAATGAGGAGTACGCTCG
CCTCAACCCCGGAGGTGGCTACACGCAAGCTTTAACTCTCGGCAAGGGGT
TCTCGGGTGCCGAGAGGAGTGCTGCAAAGCAAGGCGCCGGTAATAAGGGC
AGCAGCGGCGGCAGCAGGAGCGGCACCAGGAGCGGGGGTACGATGAACGC
CTTTGCCCAACACCAGGAGCTGATCCGTAACTATCACAGGTATGCTATGG
GTACATTAGCTACCGGTTGCTCGAGTGTGTGAGCAGTTGGAGGTGTGGCA
TTGCTCGTCCTCAGGGATTCCGCAAAGATTTGGTTTGCCGAAGTCTTTGA
GGGGGACAGCGTACATGCCTACAATACCGCAGCGTGCTACAGTACAGCAA
CCAGTACAAGAGCCTACAATTGTATCGCGATCCGTTCCAGCAGTGCGGAC
GGTGCCCTCTCCGTCTCAGTGGGCACGACCAAGTGCTTGAGATTAAACAG
CTGTACACAGGGCTCGTACTTGTACCCATCTTCCTTTTTTGTGGAATTTG
CTGTGCCCTCTGCGCGGCATCGGATAGCCCACGATCATCATGTAACTTGA
GCATGCCTTAAGACGACAACACTAGCTCCCCGGAACAGAACGTCTTAACA
GGTAGTAGCTGGCAGTGTTGTCCACTCGTACGTTTAGCAGTCCCTGTGCT
CCAGCACTGATGATGCTTCAACGCGATCGGGCGCAAAACGGAATGTCCTG
CGAGCAGCTGCCTTCTCTCGGTGCGCATGACTCCTCTTCTATACGCACGC
AGACATCCTCTTTGGCACATAATAATAAATGCTCACTTCTCATCAACTCC
AATAAACACCAATTTCAGACTCCTCCCCCCATAGGTTGGACCCATCTGAA
ATACTCGCTTTATTGTATTTTTCCGAAGTGTCATTTTTATTATTATTTTC
CACGAAGTCTGGAAGGTAACTCTCTGGCCAATAACGAGGGGACGACACCG
GTCGCGTCCCTCTCTCCTCCAGAGTCCAAGTTACCCTTCCATGTCAACTG
GCAGGCCCTAACAAAATGCCGTCTCAGTACACCGAGACCCCCAATGGTAC
TCCATACCATTGACATCCACCAACATCGACGTTTAGTGGGATGGCATTCT
GTCCCTTTGCCCGTACCTTCGTGTGTGTTAACGCTTCTTCTGCTCCGTCT
TCTTCCCCTTCGCTAGTTTACGGGATACCATGTCTACATCCACCATATTA
TTCCTAGTATATATTTTAAACGTACCCGAACCTTCCTTCCATCTACCCTC
TCTCTGTATAATTCTGTCCGGTACGTCTCCTCCTGCTGCCAACGTGGTGG
CGGCCCCGATTCTCAACGAATGCAAGCCAACCTGTCTCGGGTCGCCACCT
ACCTTTTCCACAATCTGGCGAAGGGCGCTAAGAGCTTTGGAATTGTCCCC
AAACCTTAACCGTATTGCTCCTCCTACAGCGAAACGAGCACAGAGGGGCG
TCCTCAGGTAAAGCGAGATGGCACGCCATCAATTCCACCAACACCGCCAC
GGCACCGCCACCGGCTCCAATCTGAGAATTCGCGCCTCGTGCATCGCGCA
CCCGTGTAACGCACGCCCCCGTCTCCGACTGATCCCCCTTGTGGCCGCGA
AACCGAACCCGAACTCCTGTGGCCTTGTGCCAGTGCAACGGGGCTGGCAC
GTACTCCCCATCAAAGAATTCGACGTCGCTACGCCGCAAACAATGCACCT
GGTGGCATTGTCCCGACAGTGTGGCAAAAACCTCATCTGAACGCACCACC
AGGAAGTACGACACCGCCAAACACAGCCACAACACGCGGCCACCTGTACC
CCACGACGCCGTCAACTGCTGTTCTTCCAACAACATCTCCCACGAGACGG
GAACACGACTGCGACTCTTCGTACCCGCTCGGACGTGAACACGTGCGACA
CCCAACAAACTCTGTTTGATAAGAGGCGCACCGGTAGGCAACTCAAGCTG
TTTGTCAACTCGATGAAAGTACTGTACCGCGGCGAGCTTGCCGGATATGG
TCGGTGCAATGTTACCCTTATCTGCACAACACCACGCCACACACCCCAAA
AGTGCTTGTTCCAGCACAGCACCATCTGCATCCCCCGAGAGGTACTCCGA
CTCACCAACCATGCGGCGCAAAGCACACCAAGCCCGCCAACCCGACAGGT
AAGTTCTTCGAGACGACTGCGCAACTGACTCGCGGACGTACTCGCGGCTC
GGACGCCGGTACAAAGATCGGCGACCTCCGGGCCCAGGACAAGTTGGCGC
CATGCGACATCGGGACGGGACAGGCGAAGACATGCGTCCATGGTCTCCGG
CTCCCATCGGGAAATACCATCCGCAATCGTGTTATCGACACCCCTAACCT
GAGCGCCTCAAAGCACTACCCGCTGCCCATCTCTAAACATCCGAGCATAC
GCATAAGTGCCTCCCGACCGGGGCTCGCTTCCCCCCCGATACTTGTTCAC
CCAGGCCACACGCGAGGAGTTGTCTCCCATCAATTGGATGCTATTGCGGG
CGTATTCCGGCCTCATGTCCGATTGCACAATCAACACCCAGGCGACAACC
ACCATCGCGAGGAGTTTGAGCGTGTTTATGCTCAAACCATCTCGCCCCTC
AGCCTGCTGGCGAAACCTCTCCCCTACTTCCTGACTGAAATCGAAACGCC
ACCGTACTCCCGAACATAATTCGGCGTGCAAGAAATACCCTCCCATGGCA
TCACCAGATACGTCTGGCCACGAAAGACACTAATATGGTTGATCGAAACA
TAACCAACCAAACAAACAAAGTGGGGCTGTTAATAACCGCGACGGCGACC
CCAAGCCCCCTTCTACCATCAGACGCCAAAACCGCATGTCCGAACGGAAC
TCGGAACCGATCCGTTTCTGTGCTCGCCCCCGGGCTGTCAATCGCACCGG
CGGTAGCTCCCAACAGGTGGAGCCTACGGCGAACACATATTCACCAGGCC
GCACGACTTCACAGATATGCAACAGTGAACCAATCACCCCCCGTAACTTG
GACTCAGAAGCACAGCAGTGGCGCGCAGGGCCACTTGCAGATTGTCGCTC
GCAGAACTTCCAGCTTATGAAGCACCACATGCGGATGTTCGCCGAGCTCC
ACGCGTGCACCCGCTGGTCCATGATCACCTTCTCCATCCGCCGGTGGGCG
GACGACACCCCTGCTCCACCCCTGTATACACCGGAATCCATGTGTGAGCC
TCCCGCTCCAAACAGGGACGGCACCGCGGGAGCGAAGCTCAAGCCGCCCC
CGCTGCCACGCCGACCAACGCCCTGCAGCAACCCGGGGCTTGGACCACCG
TGATGTGACCCGTAGCCGGACGAGAAGCCATTCGCCCCCGCGCCCCCATA
CATCGGCGCTGGTGCAACCTCGGCAACGCCACCCGCCGCGGCCCCGCCGC
CCCGGACGCACACGGTCTCCAGCAACTCCTGGAACCTCGCCGCCATGTCC
GCCCTGAGGTCGTAACCGACGCGCTGATGACAGCCCGTTCATTGGTGCTG
TCCTTTCCTCTCCGCCGCGTACTCCTCGCGGCCAGTAGCGGATTCATCCG
AGGTGTTGCCGCCCCCGCTCATGTCTCCGTCCCTGGACGACGTGCCCCCG
ATATACCGATCAATATCCAAAGTAGTCGACGCTTCTCCGATAACGTCTTA
TCGACTCCGTCGCCCAGATTCTTGGTCTTCGCCCCGCCGGCAAAGACGAC
AACACTAGCTCCCCGGAACAGAACGTCTTAACAGGTAGTAGCTGGCAGTG
TTGTCCACTCGTACGTTTAGCAGTCCCTGTGCTCCAGCACTGATGATGCT
TCAACGCGATCGGGCGCAAACGGAATGTCCTGCGAGCAGCTGCCTTCTCT
CGGTGCGCATGACTCCTCTTCTATACGCACGCAGACATCCTCTTTGGCAC
CTAATAATAAATGCTCACTTCTCATCAACTCCAATAAACACCAATTTCAG
ACTCCTCCCCCCATAGGTTGGATCCATCTGAAATACTCGCATGCCTTGGC
GATATCGTGTATCGGTTGTTTTCTTGCCGTTGATACCATAAGGCCAGGGG
GACGAACATACCTGCGGCCTTGAGAAATTTGGAGAACAAAATATTGTGCG
GTTGTGGCTGCGCTTGTAAACAGGAGCGTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAATGATGCCGGC
TTGTGTCTGGCATGGACTTTCCGGTGCGGCGTCAGTAGAGCGTCTCACGG
ACGTCATTCTTCCCCCTCTTCCGGGTCTTTCCCCCTCGGTTTGGTTTGAG
GCAGGTACCACCTCAACGCGGAGGTGCCATCATCAGGAGCGATAGAGGCC
AAGGGGTTGCCAGGGCAAAGGCGTTTGACTGACGAAGAGGCCTTGCGGCG
GCAACACCGCTTCGTGCGCGATCACAACGAGGACAGCCGGGCACAGCAGG
CAAGATGGAAAATACTGACATCGGATTGGGGGAGAAAGCAAAACAGAGCA
TGA

Coding sequence (CDS) from alignment at chr_00:12039595..12045097+

>Ec-00_007540.1 ID=Ec-00_007540.1|Name=Ec-00_007540.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=417bp|location=Sequence derived from alignment at chr_00:12039595..12045097+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTCGACGAAATGAGGAGTACGCTCGCCTCAACCCCGGAGGTGGCTA
CACGCAAGCTTTAACTCTCGGCAAGGGGTTCTCGGGTGCCGAGAGGAGTG
CTGCAAAGCAAGGCGCCGGTAATAAGGGCAGCAGCGGCGGCAGCAGGAGC
GGCACCAGGAGCGGGGGTACGATGAACGCCTTTGCCCAACACCAGGAGCT
GATCCGTAACTATCACAGGTACCACCTCAACGCGGAGGTGCCATCATCAG
GAGCGATAGAGGCCAAGGGGTTGCCAGGGCAAAGGCGTTTGACTGACGAA
GAGGCCTTGCGGCGGCAACACCGCTTCGTGCGCGATCACAACGAGGACAG
CCGGGCACAGCAGGCAAGATGGAAAATACTGACATCGGATTGGGGGAGAA
AGCAAAACAGAGCATGA

Synonyms

The feature 'Ec-00_007540.1' has the following synonyms


Synonym
Esi558_0015
Esi_558_0015