Ec-00_007530.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007530.4
Unique NameEc-00_007530.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length304
Homology
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BLAST of Ec-00_007530.4 vs. uniprot
Match: UPI001C08686B (uncharacterized protein LOC121719377 isoform X1 n=26 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C08686B)

HSP 1 Score: 56.6 bits (135), Expect = 6.670e-5
Identity = 49/150 (32.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:  580 VLIARSLSSPVCALKEVVLAENFFSDGFVEALNKGMRELEEVHGISPLKNLDISNNKISSRVSGALASILGSCANLVRLNLSWNDLRTD----LKTDLFNQR--------GDC-----SCPFTTAALWRPGRLVSLELSFNGLSDAFGVE 978
            V +A  L SP   L E+ L+ N   D  V+ L+KG+  L        L+ L +S   +S +  G +A++L S  +L+ L+LS NDLR      L T L++           +C     SC     AL  P  L+ L+LS+N L D+ GV+
Sbjct: 1649 VSVATVLQSPN-VLIELDLSHNDLRDSRVQLLSKGLSSLH-----CKLRALRLSECTLSEKSCGIVATVLQSPNSLIELDLSHNDLRDSGVQLLSTGLYSSHCKLQALRLAECKLSEKSCEIVATALQSPNSLIKLDLSYNDLRDS-GVQ 1791
The following BLAST results are available for this feature:
BLAST of Ec-00_007530.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C08686B6.670e-532.67uncharacterized protein LOC121719377 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12034913..12039412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1161
Hectar predicted targeting categoryother localisation
Gene idEc-00_007530.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007530Ec-00_007530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12031148..12039412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007530.4Ec-00_007530.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12035083..12039333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007530.4.7Ec-00_007530.4.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12034913..12035100 -
Ec-00_007530.4.6Ec-00_007530.4.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12035529..12035739 -
Ec-00_007530.4.5Ec-00_007530.4.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12036386..12036585 -
Ec-00_007530.4.4Ec-00_007530.4.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12037302..12037392 -
Ec-00_007530.4.3Ec-00_007530.4.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12037777..12037939 -
Ec-00_007530.4.2Ec-00_007530.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12038221..12038341 -
Ec-00_007530.4.1Ec-00_007530.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12039226..12039412 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0075303UTR:Ec-00_007530.4Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 12034913..12035082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007530.4CDS:Ec-00_007530.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12035083..12035100 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0075305UTR:Ec-00_007530.4Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 12039334..12039412 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007530.4 ID=Ec-00_007530.4|Name=Ec-00_007530.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=304bp
MSISSRSPTSASEHHGRYRGNDIADGYMSDSNFVLTDGKWEVTRVYSETK
WDEDERKRENDVQYQHNQPTGKDAYTAACTRLGIAPSSHILSRLPSSRLS
LRHGLLNPASATALSAGLLGNRCIRSLNLGSNLLRDDSARPLLEAIFGNP
SLTKLDLSRNLLSDDFGVLIARSLSSPVCALKEVVLAENFFSDGFVEALN
KGMRELEEVHGISPLKNLDISNNKISSRVSGALASILGSCANLVRLNLSW
NDLRTDLKTDLFNQRGDCSCPFTTAALWRPGRLVSLELSFNGLSDAFGVE
EKV*
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spliced messenger RNA

>Ec-00_007530.4 ID=Ec-00_007530.4|Name=Ec-00_007530.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1161bp|location=Sequence derived from alignment at chr_00:12034913..12039412- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTAAAGTCTGAAGTCGCATTACCTGCTGCACCCAAGGGCTTTTTCAGCAA
CAGCCGGGGTGACATGGAGGTAGCCCACCATGTCGATCTCCAGTAGATCT
CCAACCTCGGCTTCAGAGCACCATGGACGATATCGCGGCAACGATATTGC
TGATGGCTACATGTCCGACAGCAACTTTGTGTTGACGGACGGCAAGTGGG
AGGTGACGAGGGTTTATTCAGAAACCAAATGGGATGAAGATGAGAGGAAA
CGAGAAAACGATGTCCAGTACCAGCATAATCAACCCACTGGCAAAGACGC
CTATACAGCGGCGTGCACCAGGTTGGGAATCGCTCCGTCTTCCCATATCT
TGTCTAGGCTGCCTTCGAGCCGCTTGAGCCTTCGACACGGGCTTCTAAAC
CCAGCCTCGGCTACCGCGCTGTCGGCGGGACTATTAGGCAATCGCTGCAT
TCGGTCACTTAATCTCGGCAGCAACTTGCTCCGGGATGACAGCGCCCGCC
CCTTGCTGGAAGCAATCTTTGGAAATCCTTCTTTGACAAAGCTGGATCTG
TCCAGGAACTTGCTGAGCGACGATTTCGGAGTACTCATAGCACGAAGCCT
TTCTTCTCCGGTGTGCGCACTGAAAGAAGTGGTTCTTGCTGAGAATTTTT
TCTCGGATGGCTTTGTTGAGGCTCTGAACAAAGGCATGCGGGAGCTGGAG
GAGGTGCATGGGATCAGCCCCCTGAAGAATCTCGACATCAGCAACAACAA
GATTTCCAGTAGAGTTAGTGGAGCATTGGCGTCGATATTGGGCAGCTGTG
CAAACTTGGTAAGGCTGAACCTGAGCTGGAACGATCTGAGGACTGATCTC
AAGACCGATCTATTTAACCAGAGGGGCGACTGCAGCTGTCCATTTACTAC
CGCCGCTCTGTGGCGCCCAGGGCGGCTGGTCAGCCTAGAGCTGTCGTTCA
ACGGCCTATCCGATGCCTTTGGGGTAGAGGAGAAAGTGTGACAAGGGAGA
AAATAGCGCTGCCAACAACCGCAGCAACAGCGGCCAAAAATGCACGTCGG
ATGCTCTGTGGATGCCACTGCTGCACACAGGTGACCGTCGGCAATATGCT
GGGAGAAAACGACTCCTTGTCAGTGCTGGACCTCAGTAGGAATCACCTGG
GAAAATCCGCG
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protein sequence of Ec-00_007530.4

>Ec-00_007530.4 ID=Ec-00_007530.4|Name=Ec-00_007530.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=304bp
MSISSRSPTSASEHHGRYRGNDIADGYMSDSNFVLTDGKWEVTRVYSETK
WDEDERKRENDVQYQHNQPTGKDAYTAACTRLGIAPSSHILSRLPSSRLS
LRHGLLNPASATALSAGLLGNRCIRSLNLGSNLLRDDSARPLLEAIFGNP
SLTKLDLSRNLLSDDFGVLIARSLSSPVCALKEVVLAENFFSDGFVEALN
KGMRELEEVHGISPLKNLDISNNKISSRVSGALASILGSCANLVRLNLSW
NDLRTDLKTDLFNQRGDCSCPFTTAALWRPGRLVSLELSFNGLSDAFGVE
EKV*
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mRNA from alignment at chr_00:12034913..12039412-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007530.4 ID=Ec-00_007530.4|Name=Ec-00_007530.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4500bp|location=Sequence derived from alignment at chr_00:12034913..12039412- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTAAAGTCTGAAGTCGCATTACCTGCTGCACCCAAGGGCTTTTTCAGCAA
CAGCCGGGGTGACATGGAGGTAGCCCACCATGTCGATCTCCAGTAGATCT
CCAACCTCGGCTTCAGAGCACCATGGACGATATCGCGGCAACGATATTGC
TGATGGCTACATGTCCGACAGCAACTTTGTGTTGACGGTATGCTCTCATC
ATGCTTTCTCTACTCCGAGCGAGACGTCTTGCGTGCCCTGCTGTGTGCCT
CTGACCCCGTGTTTCTCCAGAGGTGAAACTGTAGGGGGCGTGTCGTTAAC
CAATGCGAAGGAAGTACAGCAGCGCTGAGCGAGCGACAAATATGTACTTA
CTACCTGTTCGCCCCTTTGACTAAAAACACGCACGCGATCGAGCAACGTT
GTGCAGTTATTTGGTCGCTTGCGCAGTATTCCCCGCTGGCTACCAGGTTG
TGAGTATGTCCCTGTCGCGAGGGGGCGAGCGCAAAGCAAAAATGATAGGT
GTACGTTCAGCATTATGCGTGCACGCCAACGTTTCCCCCAGGTTGCCTCG
GAAACAAATTGCCCACGACCGGGCGATGAACCTACAAAACGTACTTAATT
CTAAACGTAGGTACGGCTTCATTGCGACTCCGAGGAGGAATCTTCGTGTG
TGTACATTGCTTTGTTGACCCCGGCTGGTGCGTCAAACGGATGCCGAGAT
ACTTAGAGCGGCACCCAGAATAGACGGGATGACGCACAAACTCACAATGG
GCTTTGTGCACGTCGGTGCTCCATCATGTTGCCCTTGTTCCTTCCGACAC
GGTGCACGAACGATGAGCAGAGACGACAAACACGTCGTGTGTGATACATT
TAAAATACGATGAGGATCACAAACCGAATCTGAAGTAATCTGAAGTACCT
CAAAAGGTACGTGGTTGTGCCGTGGCAATATTTGTTGAGCCGTGCCCCCA
AGCTAGGTACGTTGCCAACAACGTGTCATCTGACTGGGAATGCTCGGAAC
CGTTGTATATTGTACCTGATACATCCTTATCGTACACGCGCCTACAACGT
GTTGACACGCAAATCGCGCAGGACGGCAAGTGGGAGGTGACGAGGGTTTA
TTCAGAAACCAAATGGGATGAAGATGAGAGGAAACGAGAAAACGATGTCC
AGTACCAGCATAATCAACCCACTGGCAAAGACGCCTATACAGGTGAAAAA
CTCGGCATCATGTTTCGGTATTGTGTGTCGATGTTGTTGTGAAGGAGAGC
GTGAAACCTTTGAGTGAGAGGAGAATCCTCCTCCAAACGATGCAAAATTA
CGTACGAATCGTGAATGGCCATTTAAGTTGACATTTGTGGGGGGAGAGAG
AGAGTCGAGCACGTCTCGTGTCTACCGCCTTATGGCTCATAAACAAACTG
TGCCACCCCCCCGCTTGTATCAACATTGCAACCATTCCGGTGCCGCAATG
ATATTGTCCGCTGTGATGCACAGCGGCGTGCACCAGGTTGGGAATCGCTC
CGTCTTCCCATATCTTGTCTAGGCTGCCTTCGAGCCGCTTGAGCCTTCGA
CACGGGCTTCTAAACCCAGCCTCGGCTACCGCGCTGTCGGCGGGACTATT
AGGCAATCGCTGCATTCGGTCACTTAATCTCGGCAGGTGCGACATTGACG
ATTGGACTGGTTGATCTGGATTTTCCCGTTGGTAGAATGATTCCTTATGT
TCGCACCTATATCCGTGCACTGTTGTTGTCGGCAACAAGCAACCGTTGTC
TGACCTCGATCCAGTACCTCCTCTTTGGTGCTGCATGCCCAGCTGTTAGC
ATGCAGCCAACCTGTACGGCGAGCGCACCGCTCGGCTAGTTTAACACGAT
GTTTTAGGAGTTCCACTGCTTTCGTTACGCACGAAGCGGACGTAATACCA
GACGGCGTCCCCCCAGTGGGGTAGTCTGGGCGTTCGAATCGGTTCTGTTA
TTCCCGGTGCACTACCGCGTGCCCTCATCGTTCGCCTGTTCGGCTGTTGT
CCGTGTCGCACTATTTGCAGCAACTTGCTCCGGGATGACAGCGCCCGCCC
CTTGCTGGAAGCAATCTTTGGAAATCCTTCTTTGACAAAGCTGGATCTGT
CCAGGAACTTGGTGAGCTCGATGGTTGGCTACCCAACGCATCGACAGGTT
TCTTTCACGCTTTGGGATAGTTTCTTGCACGGTGCACGCGAATGGATCAA
TACGAAAGGCCTGTGGCTCCTTAGTCCTGCCTATCTCATCTAGTCCCGAA
GTAGGGCCAAGCCCGAGTGGATCAAGACTTTTGGTCGCTGGAACATGTGT
GGGTGGGGTACTGTGCTTCTTGTTTTTTCTTTTCATGGAAATATGCGTAG
GAAGAACTGGGATGCAAACGTTTCGGGTGGGGGTACCACGTTGGTTGGAG
TTGAATGACGTTGTCCGGGCCTTCTTGACAGAGATATCTTTCACCGCTTC
CACCGCTGCGAGTGCTGAAGAATGTCCGTAGAACGAGTTTGTGTTTGATC
TGTAGTAGGGACGATATGGTTTTCTTTTTGTTGCCCGTTCAATCAGCCTT
CGCCAGGGCTCAAGTTGTGAGATAATCCCGGGCGATGGAATCGAAGCCAG
TAGTTCGGTTTCTATGATCTCCCTCAGGAAGCAATGACACTGCTTCGAGA
ACGAACCGTCCGACCAGAGTTTTTTTTCATCAACACTCATCCGCGGGGAA
AGCTTCGGATATCTCAATTAAAATAGTTCGTGCTGTGTGCGTGATGGTTT
GCGAAGGTTTGGTTCTACATTGCCGAACCGTTTTCTGCCGTCGCTTCCTG
TTGTTTTCGACGCTTTCGATCGTCCAGCTGAGCGACGATTTCGGAGTACT
CATAGCACGAAGCCTTTCTTCTCCGGTGTGCGCACTGAAAGAAGTGGTTC
TTGCTGAGAATTTTTTCTCGGATGGCTTTGTTGAGGCTCTGAACAAAGGC
ATGCGGGAGCTGGAGGAGGTGCATGGGATCAGCCCCCTGAAGAATCTCGA
CATCAGCAACAACAAGATTTCCAGTAGGTAAGAATACCACCCGGGAGCAG
GCCGCGTCCTACCATCTTGCACCGTTGGTCAAACAGGCAACGCTTTAGAG
AAGTAAACTGTGACACTCTTTATCACACTAACACGGAATTACACGTGCAA
GTCTTGGCCTGGAACAATATTTGTTGCTGTCCGTAAGGTAGAATAGTGTT
GGTCATCCTCATGTTCTGTTTCATTCGGCGTTCGTGTGGAACACACTTGA
AGATAGCAGCAGGACCAGATGCCATACAGGACAGATATGCCCATTCTGAT
AGTTTCCGAGCATGGCATACAATACAAGCTGACTAGATTGTGGGAAAGTT
ACTGTGCGGAAGATGTTAGATTATGCTAACTACGTCATTGAGTATACCCC
AGAGAACCCAATGGTATCTACGACGTTCATGTAAGAAACATATGAACAAC
AACGACAGTCGTCCATAGTTTCGATTGAAGATGTTAATCTCAAGATCTAC
GATTGTTTCATCCGGCAGTGTCATCATGAACATCTGAATGTTGCAATAGA
ACGTTTTGAAGATGGGTTGACCGCTGTACAATGTAGGACCTGAAACAGCA
TCCCCTCCCCGTCTACCGTAAACCGACATCTACCCTGCCCTCTCACGCGA
CACCAATGATGTCCGGGTGGTAGAGTTAGTGGAGCATTGGCGTCGATATT
GGGCAGCTGTGCAAACTTGGTAAGGCTGAACCTGAGCTGGAACGATCTGA
GGACTGATCTCAAGACCGATCTATTTAACCAGAGGGGCGACTGCAGCTGT
CCATTTACTACCGCCGCTCTGTGGCGCCCAGGGCGGCTGGTCAGCCTAGA
GCTGTCGTTCAACGGCCTATCCGATGCCTTTGGGGTGCGTGTGTCTCCAT
GTCTCTCATGTCTCTTATGTGCTATGGCGGTGTCGGGTCTTGTACGCTTA
GGCTTGGCGGTAGGGTTTGGTTCGAAGATAGCTCGGCACGAAGTGTGCAA
GATCCATGACAGTGGCCAGCTCAAGGACTGCTTTCACCGGATACGGATAC
AGTTTCACGGCCTCGAACGGTCTGGAAATGCCGCTTTCTTTGAAGAAGAG
CCTGGCCGACGCGACCGTTATGGTATGTTGCATGACGCGCACCGAACAAG
CAACGAAAATACTCTTGGTCTCGCAGACAGCGTAGCCTTCCGCGTACATG
TGGCGCTCGCAACCATTTGAAGCTTAAATCTACATCGGATAGGGTTACAA
GCTGTTGACGGGATGGTTTCGAATGACTGATGGATGGCGATATTTTCAAA
CTTGTGTGACAGGTAGAGGAGAAAGTGTGACAAGGGAGAAAATAGCGCTG
CCAACAACCGCAGCAACAGCGGCCAAAAATGCACGTCGGATGCTCTGTGG
ATGCCACTGCTGCACACAGGTGACCGTCGGCAATATGCTGGGAGAAAACG
ACTCCTTGTCAGTGCTGGACCTCAGTAGGAATCACCTGGGAAAATCCGCG
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Coding sequence (CDS) from alignment at chr_00:12034913..12039412-

>Ec-00_007530.4 ID=Ec-00_007530.4|Name=Ec-00_007530.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=912bp|location=Sequence derived from alignment at chr_00:12034913..12039412- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGATCTCCAGTAGATCTCCAACCTCGGCTTCAGAGCACCATGGACG
ATATCGCGGCAACGATATTGCTGATGGCTACATGTCCGACAGCAACTTTG
TGTTGACGGACGGCAAGTGGGAGGTGACGAGGGTTTATTCAGAAACCAAA
TGGGATGAAGATGAGAGGAAACGAGAAAACGATGTCCAGTACCAGCATAA
TCAACCCACTGGCAAAGACGCCTATACAGCGGCGTGCACCAGGTTGGGAA
TCGCTCCGTCTTCCCATATCTTGTCTAGGCTGCCTTCGAGCCGCTTGAGC
CTTCGACACGGGCTTCTAAACCCAGCCTCGGCTACCGCGCTGTCGGCGGG
ACTATTAGGCAATCGCTGCATTCGGTCACTTAATCTCGGCAGCAACTTGC
TCCGGGATGACAGCGCCCGCCCCTTGCTGGAAGCAATCTTTGGAAATCCT
TCTTTGACAAAGCTGGATCTGTCCAGGAACTTGCTGAGCGACGATTTCGG
AGTACTCATAGCACGAAGCCTTTCTTCTCCGGTGTGCGCACTGAAAGAAG
TGGTTCTTGCTGAGAATTTTTTCTCGGATGGCTTTGTTGAGGCTCTGAAC
AAAGGCATGCGGGAGCTGGAGGAGGTGCATGGGATCAGCCCCCTGAAGAA
TCTCGACATCAGCAACAACAAGATTTCCAGTAGAGTTAGTGGAGCATTGG
CGTCGATATTGGGCAGCTGTGCAAACTTGGTAAGGCTGAACCTGAGCTGG
AACGATCTGAGGACTGATCTCAAGACCGATCTATTTAACCAGAGGGGCGA
CTGCAGCTGTCCATTTACTACCGCCGCTCTGTGGCGCCCAGGGCGGCTGG
TCAGCCTAGAGCTGTCGTTCAACGGCCTATCCGATGCCTTTGGGGTAGAG
GAGAAAGTGTGA
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Synonyms
The feature 'Ec-00_007530.4' has the following synonyms
Synonym
Esi558_0014
Esi_558_0014