Ec-00_007470.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_007470.2
Unique Name	Ec-00_007470.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	163

Homology

The following BLAST results are available for this feature:

BLAST of Ec-00_007470.2 vs. uniprot

BLAST of Ec-00_007470.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:11981627..11982812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1186
Hectar predicted targeting category	other localisation
Gene id	Ec-00_007470.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_007470	Ec-00_007470	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 11980143..11982812 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007470.2.1	Ec-00_007470.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 11981627..11982812 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007470	5UTR:Ec-00_007470.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 11981627..11981672 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007470.2	CDS:Ec-00_007470.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 11981673..11982161 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007470	3UTR:Ec-00_007470.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 11982162..11982812 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007470.2	Ec-00_007470.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 11981673..11982161 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:11981627..11982812+
coding sequence from alignment at chr_00:11981627..11982812+

mRNA sequence

>Ec-00_007470.2 ID=Ec-00_007470.2|Name=Ec-00_007470.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=163bp
MWKISEGSSYAVTTTWRELYVCLSSTHVAAARHTNGCLHRMVLWFAVTGS
IPSSWVVAVVRGRRSASSPYCCSKNTAAVIELCMQIFCFGLLLPPQPENL
TAVSRPARLQSTNQHWQKCVGDAVTAQLSRHSYDFYVQSASGPYCCRNTK
NRAIYIYFFFPY*

spliced messenger RNA

>Ec-00_007470.2 ID=Ec-00_007470.2|Name=Ec-00_007470.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1186bp|location=Sequence derived from alignment at chr_00:11981627..11982812+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCCTACGACATCGATGTACAGTAGTACTGCTGTCGTTGTAGCACCATGT
GGAAGATCTCCGAGGGGTCCTCCTACGCGGTAACGACAACATGGCGAGAG
CTTTACGTGTGCCTGTCGTCGACACATGTGGCAGCCGCACGACACACGAA
CGGATGTTTGCATCGCATGGTACTATGGTTCGCCGTGACAGGAAGTATCC
CATCCAGTTGGGTCGTTGCCGTCGTGCGCGGACGTCGTTCGGCGTCTAGC
CCATACTGCTGTAGCAAAAACACAGCAGCAGTAATCGAGCTATGCATGCA
AATATTTTGCTTTGGTTTACTATTGCCTCCACAACCCGAGAATCTCACGG
CTGTATCTCGACCTGCAAGACTCCAATCAACAAACCAGCACTGGCAGAAG
TGCGTGGGAGATGCTGTGACAGCACAACTAAGTCGACACTCGTACGACTT
CTATGTACAGTCGGCGTCTGGTCCATACTGCTGTAGAAATACAAAAAATC
GAGCCATATATATATATTTTTTTTTTCCATACTAATAACAAGAAATGTAT
CACGTCACGACGACCATCCTGTGAGTATATATATAATATATAATGATAAC
ATGATAGTTGGGGGCGTCATTCTGTGATCGAGTCCACGCGGGGGCTGTAG
CGAAGTCGGGTAACGTGTGAGAGCTACAGAGCGCGTGAAGCAACGGAAGG
ACAGCAGCAGCCGCCTAACGCAGTAGCGGCGGCAGTATAGAGAAGGACGG
GACGGGACACGGCGCAAGCATTGGGGAAGCGACCAGCCCGCGATCGGGAC
CCTCCATATAAAGGTGGGTGTCCAAGATACATCGTGTCTGCCGTGTTCCT
TCCCGCGTGCCGCTACTCTTGTGACCTCACCGCTGCGTGCATTAGCACGG
GGGGGGGGGTGCAGTAAGGTACTTGCCGGTACCTGGTCTGTGCCGCGCAC
AGACGGGCAATGTAGCTGAATGCATCGACGATAATACGCTAACGTGAGCG
TTTGTCTCCATTGATGGCATAGACAAGTCCCACGGTTTAATAAGCGGCCG
CAGACGTAATCGAAAAGTGCATACAACAGCATTCACGGGAACGGATAAAG
AAGAGCAAAAACCACATGCATACGAGAGAAAGACTCAAACAAAAAGACTG
AAAAACGAAGAAGATGAAAAAAAGAAACGAAGGTGG

protein sequence of Ec-00_007470.2

>Ec-00_007470.2 ID=Ec-00_007470.2|Name=Ec-00_007470.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=163bp
MWKISEGSSYAVTTTWRELYVCLSSTHVAAARHTNGCLHRMVLWFAVTGS
IPSSWVVAVVRGRRSASSPYCCSKNTAAVIELCMQIFCFGLLLPPQPENL
TAVSRPARLQSTNQHWQKCVGDAVTAQLSRHSYDFYVQSASGPYCCRNTK
NRAIYIYFFFPY*

mRNA from alignment at chr_00:11981627..11982812+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_007470.2 ID=Ec-00_007470.2|Name=Ec-00_007470.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1186bp|location=Sequence derived from alignment at chr_00:11981627..11982812+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCCTACGACATCGATGTACAGTAGTACTGCTGTCGTTGTAGCACCATGT
GGAAGATCTCCGAGGGGTCCTCCTACGCGGTAACGACAACATGGCGAGAG
CTTTACGTGTGCCTGTCGTCGACACATGTGGCAGCCGCACGACACACGAA
CGGATGTTTGCATCGCATGGTACTATGGTTCGCCGTGACAGGAAGTATCC
CATCCAGTTGGGTCGTTGCCGTCGTGCGCGGACGTCGTTCGGCGTCTAGC
CCATACTGCTGTAGCAAAAACACAGCAGCAGTAATCGAGCTATGCATGCA
AATATTTTGCTTTGGTTTACTATTGCCTCCACAACCCGAGAATCTCACGG
CTGTATCTCGACCTGCAAGACTCCAATCAACAAACCAGCACTGGCAGAAG
TGCGTGGGAGATGCTGTGACAGCACAACTAAGTCGACACTCGTACGACTT
CTATGTACAGTCGGCGTCTGGTCCATACTGCTGTAGAAATACAAAAAATC
GAGCCATATATATATATTTTTTTTTTCCATACTAATAACAAGAAATGTAT
CACGTCACGACGACCATCCTGTGAGTATATATATAATATATAATGATAAC
ATGATAGTTGGGGGCGTCATTCTGTGATCGAGTCCACGCGGGGGCTGTAG
CGAAGTCGGGTAACGTGTGAGAGCTACAGAGCGCGTGAAGCAACGGAAGG
ACAGCAGCAGCCGCCTAACGCAGTAGCGGCGGCAGTATAGAGAAGGACGG
GACGGGACACGGCGCAAGCATTGGGGAAGCGACCAGCCCGCGATCGGGAC
CCTCCATATAAAGGTGGGTGTCCAAGATACATCGTGTCTGCCGTGTTCCT
TCCCGCGTGCCGCTACTCTTGTGACCTCACCGCTGCGTGCATTAGCACGG
GGGGGGGGGTGCAGTAAGGTACTTGCCGGTACCTGGTCTGTGCCGCGCAC
AGACGGGCAATGTAGCTGAATGCATCGACGATAATACGCTAACGTGAGCG
TTTGTCTCCATTGATGGCATAGACAAGTCCCACGGTTTAATAAGCGGCCG
CAGACGTAATCGAAAAGTGCATACAACAGCATTCACGGGAACGGATAAAG
AAGAGCAAAAACCACATGCATACGAGAGAAAGACTCAAACAAAAAGACTG
AAAAACGAAGAAGATGAAAAAAAGAAACGAAGGTGG

Coding sequence (CDS) from alignment at chr_00:11981627..11982812+

>Ec-00_007470.2 ID=Ec-00_007470.2|Name=Ec-00_007470.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=489bp|location=Sequence derived from alignment at chr_00:11981627..11982812+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGAAGATCTCCGAGGGGTCCTCCTACGCGGTAACGACAACATGGCG
AGAGCTTTACGTGTGCCTGTCGTCGACACATGTGGCAGCCGCACGACACA
CGAACGGATGTTTGCATCGCATGGTACTATGGTTCGCCGTGACAGGAAGT
ATCCCATCCAGTTGGGTCGTTGCCGTCGTGCGCGGACGTCGTTCGGCGTC
TAGCCCATACTGCTGTAGCAAAAACACAGCAGCAGTAATCGAGCTATGCA
TGCAAATATTTTGCTTTGGTTTACTATTGCCTCCACAACCCGAGAATCTC
ACGGCTGTATCTCGACCTGCAAGACTCCAATCAACAAACCAGCACTGGCA
GAAGTGCGTGGGAGATGCTGTGACAGCACAACTAAGTCGACACTCGTACG
ACTTCTATGTACAGTCGGCGTCTGGTCCATACTGCTGTAGAAATACAAAA
AATCGAGCCATATATATATATTTTTTTTTTCCATACTAA

Synonyms

The feature 'Ec-00_007470.2' has the following synonyms


Synonym
Esi557_0011
Esi_557_0011