Ec-00_007360.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007360.1
Unique NameEc-00_007360.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length59
Homology
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BLAST of Ec-00_007360.1 vs. uniprot
Match: D7G4D3_ECTSI (4-hydroxybenzoate nonaprenyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.280e-38
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR
Sbjct:    1 MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 58
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BLAST of Ec-00_007360.1 vs. uniprot
Match: D7G4D2_ECTSI (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D2_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.380e-28
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            MLGP WSPYGRLARIDKPAGTLLL+FPCWW +ALAAP+GTLPDAKLM  FA GS L+R
Sbjct:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMR 58
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BLAST of Ec-00_007360.1 vs. uniprot
Match: A0A6H5JSZ9_9PHAE (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ9_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.860e-27
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            MLGP WSPYGRLARIDKPAGTLLL+FPCWW +ALAAP+GTLPDAKLM  FA GS L+R
Sbjct:  138 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMR 195
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BLAST of Ec-00_007360.1 vs. uniprot
Match: A0A835ZKZ5_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKZ5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.280e-19
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            +LG  ++PYGRLAR+DKP GT+LL++PCWW  ALAAP G LPD KL+  F  G+F++R
Sbjct:    4 LLGTRFAPYGRLARVDKPIGTMLLLWPCWWSTALAAPAGALPDFKLLALFGTGAFVMR 61
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BLAST of Ec-00_007360.1 vs. uniprot
Match: UPI001EFE17F9 (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI001EFE17F9)

HSP 1 Score: 78.6 bits (192), Expect = 8.680e-16
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            W PY  LAR+D+P GT LL+FPCWW +ALAAP G  PD +LM  FA+G+ ++R
Sbjct:   32 WRPYALLARLDRPIGTWLLLFPCWWSIALAAPAGHWPDLRLMALFALGAVVMR 84
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BLAST of Ec-00_007360.1 vs. uniprot
Match: A0A1Y5E670_9PROT (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E670_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 4.770e-15
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   22 PYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            PY +L+RID+P GT LL++PCWW +ALAAP G++PDA L   FA+G+F++R
Sbjct:   32 PYFKLSRIDRPIGTWLLLYPCWWSIALAAPAGSVPDAVLFILFAIGAFVMR 82
[Close]
BLAST of Ec-00_007360.1 vs. uniprot
Match: A0A255YUS9_9PROT (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Niveispirillum lacus TaxID=1981099 RepID=A0A255YUS9_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 8.490e-15
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            W PY RLAR+D+P GT LL+ PCWW +ALAAP G  PD  LM  F +G+ +LR
Sbjct:   28 WRPYARLARLDRPIGTWLLLLPCWWSIALAAPAGGWPDLWLMLLFGIGAVILR 80
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BLAST of Ec-00_007360.1 vs. uniprot
Match: A0A7S2YIX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIX6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.890e-15
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   13 NWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            +W PY RLARIDKP GT LL++PC W  ALAA  GTLPDA L+  F +G+  +R
Sbjct:  124 SWQPYARLARIDKPIGTWLLLWPCGWSTALAATPGTLPDASLLALFGLGALTMR 177
[Close]
BLAST of Ec-00_007360.1 vs. uniprot
Match: A0A6U3UIB2_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UIB2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-14
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 LGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            L  +  PY +LAR+DKP GT+LL++PC+W  A+AAP G+LPD KL+  F +GSF++R
Sbjct:  168 LPTSLQPYAKLARMDKPIGTMLLLWPCFWSTAIAAPAGSLPDLKLLGLFTVGSFVMR 224
[Close]
BLAST of Ec-00_007360.1 vs. uniprot
Match: UPI00146B7F3C (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Sneathiella limimaris TaxID=1964213 RepID=UPI00146B7F3C)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-14
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 NWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 174
            N  PY +L RID+P GT LL+FPCWW LALA P G  PD KL   FA+G+ ++R
Sbjct:   29 NIQPYLKLTRIDRPIGTWLLLFPCWWSLALATPAGAFPDPKLFLLFAVGALVMR 82
The following BLAST results are available for this feature:
BLAST of Ec-00_007360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4D3_ECTSI4.280e-38100.004-hydroxybenzoate nonaprenyltransferase n=1 Tax=Ec... [more]
D7G4D2_ECTSI2.380e-2882.764-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A6H5JSZ9_9PHAE1.860e-2782.764-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A835ZKZ5_9STRA1.280e-1960.344-hydroxybenzoate polyprenyltransferase, mitochond... [more]
UPI001EFE17F98.680e-1658.494-hydroxybenzoate octaprenyltransferase n=1 Tax=Ol... [more]
A0A1Y5E670_9PROT4.770e-1558.824-hydroxybenzoate octaprenyltransferase n=1 Tax=Al... [more]
A0A255YUS9_9PROT8.490e-1558.494-hydroxybenzoate octaprenyltransferase n=1 Tax=Ni... [more]
A0A7S2YIX6_9STRA8.890e-1559.26Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A6U3UIB2_9STRA1.160e-1454.394-hydroxybenzoate polyprenyltransferase, mitochond... [more]
UPI00146B7F3C1.270e-1457.414-hydroxybenzoate octaprenyltransferase n=1 Tax=Sn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11799898..11800074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.1e-23
Seed eggNOG ortholog2880.D7G4D2
Preferred nameCOQ2
Length177
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K07964,ko:K13412
KEGG ReactionR05000,R05616,R07273,R07811
KEGG Pathwayko00130,ko00531,ko01100,ko01110,ko04626,ko05145,ko05205,map00130,map00531,map01100,map01110,map04626,map05145,map05205
KEGG ModuleM00078,M00128
Hectar predicted targeting categorysignal peptide
Gene idEc-00_007360.1
GOsGO:0000428,GO:0002083,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008412,GO:0009058,GO:0009059,GO:0009108,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010259,GO:0010467,GO:0016020,GO:0016021,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019400,GO:0019438,GO:0019748,GO:0019751,GO:0019866,GO:0030880,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032592,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042181,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044455,GO:0044464,GO:0044550,GO:0046483,GO:0048856,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098542,GO:0098573,GO:1900558,GO:1900560,GO:1900561,GO:1900563,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901661,GO:1901663,GO:1902494,GO:1990234
EggNOG free text desc.4-hydroxybenzoate decaprenyltransferase activity
EggNOG OGsCOG0382@1,KOG1381@2759
EC2.5.1.39,2.7.11.1,3.2.1.166
COG Functional cat.H
CAZyGH79
BiGG ReactioniMM904.YNR041C,iND750.YNR041C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007360Ec-00_007360Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11799898..11800074 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007360.1.1Ec-00_007360.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11799898..11800074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007360.1CDS:Ec-00_007360.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11799898..11800074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007360.1Ec-00_007360.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11799898..11800074 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007360.1 ID=Ec-00_007360.1|Name=Ec-00_007360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=59bp
MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKF
AMGSFLLR*
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spliced messenger RNA

>Ec-00_007360.1 ID=Ec-00_007360.1|Name=Ec-00_007360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=177bp|location=Sequence derived from alignment at chr_00:11799898..11800074+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGGCCCGAACTGGAGTCCGTACGGGCGCTTGGCCAGGATCGACAA
ACCAGCAGGAACTTTGCTATTGATGTTCCCTTGCTGGTGGGATCTTGCGC
TGGCGGCGCCGATTGGTACCCTCCCTGATGCGAAGCTGATGACCAAGTTC
GCCATGGGATCTTTTTTGTTGAGGTGA
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protein sequence of Ec-00_007360.1

>Ec-00_007360.1 ID=Ec-00_007360.1|Name=Ec-00_007360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=59bp
MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKF
AMGSFLLR*
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mRNA from alignment at chr_00:11799898..11800074+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007360.1 ID=Ec-00_007360.1|Name=Ec-00_007360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=177bp|location=Sequence derived from alignment at chr_00:11799898..11800074+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGGGCCCGAACTGGAGTCCGTACGGGCGCTTGGCCAGGATCGACAA
ACCAGCAGGAACTTTGCTATTGATGTTCCCTTGCTGGTGGGATCTTGCGC
TGGCGGCGCCGATTGGTACCCTCCCTGATGCGAAGCTGATGACCAAGTTC
GCCATGGGATCTTTTTTGTTGAGGTGA
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Coding sequence (CDS) from alignment at chr_00:11799898..11800074+

>Ec-00_007360.1 ID=Ec-00_007360.1|Name=Ec-00_007360.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=177bp|location=Sequence derived from alignment at chr_00:11799898..11800074+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGGGCCCGAACTGGAGTCCGTACGGGCGCTTGGCCAGGATCGACAA
ACCAGCAGGAACTTTGCTATTGATGTTCCCTTGCTGGTGGGATCTTGCGC
TGGCGGCGCCGATTGGTACCCTCCCTGATGCGAAGCTGATGACCAAGTTC
GCCATGGGATCTTTTTTGTTGAGGTGA
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Synonyms
The feature 'Ec-00_007360.1' has the following synonyms
Synonym
Esi0552_0016
Esi_0552_0016