Ec-00_007330.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007330.1
Unique NameEc-00_007330.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length124
Homology
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BLAST of Ec-00_007330.1 vs. uniprot
Match: A0A6H5JST3_9PHAE (RNA_pol_L_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST3_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 4.580e-75
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 451
            MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS
Sbjct:    1 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 123
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BLAST of Ec-00_007330.1 vs. uniprot
Match: D7G4D0_ECTSI (RNA polymerase II core subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D0_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.530e-61
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 2 
Query:  131 KKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 451
            ++LAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS
Sbjct:   64 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 170
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BLAST of Ec-00_007330.1 vs. uniprot
Match: A0A836CIX8_9STRA (Putative DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.980e-43
Identity = 80/121 (66.12%), Postives = 95/121 (78.51%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQF 445
            MNAPERSESWRLN+ E+K+ Y PDTKIP+AG F I KEDHTLGNL+RMQLL DRQVRFAGY+ PHPLEN + +KVQTNG+ TP+DALS A EDL+ E++ L + F E V A K   E  Q+
Sbjct:    1 MNAPERSESWRLNEGEEKVDYEPDTKIPNAGNFIIKKEDHTLGNLIRMQLLQDRQVRFAGYLMPHPLENIMRVKVQTNGEVTPMDALSTAIEDLTSEVDNLTQRFAEGVLACKRLQESRQY 121
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BLAST of Ec-00_007330.1 vs. uniprot
Match: K0SS38_THAOC (RNA_pol_L_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS38_THAOC)

HSP 1 Score: 127 bits (318), Expect = 7.390e-31
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 2 
Query:   86 NAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGL 385
            N PERS+++ L DDE+K+ Y PDTK+ +AGTF + KEDHT+GNLLRMQLL D QV+FAGYM PHPL N+IH+KVQT+     P ++LSAA EDLS E + L
Sbjct:    3 NRPERSDAFLLGDDEEKIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHL 103
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BLAST of Ec-00_007330.1 vs. uniprot
Match: B8C993_THAPS (Probable dna-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C993_THAPS)

HSP 1 Score: 123 bits (308), Expect = 1.790e-29
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGL 385
            MNAPERS ++ L+DDE+K+ Y PDTK+ +AGTF   KEDHT+ NLLRMQLL D  V+FAGYM PHPL +KIH+K+QT      P + LSAA EDLS E + L
Sbjct:    1 MNAPERSSAFLLDDDEEKIEYQPDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPAETLSAAIEDLSNETDHL 102
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BLAST of Ec-00_007330.1 vs. uniprot
Match: A0A6U1NZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZH5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.600e-29
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGLREVFQEQV 409
            MNA +RS+S+RL + EKKL Y PDTKIP+AGTF + +EDHTLGNLLRMQLL D  VRFAGY  PHPL + + +K+QT      P+ A+S + EDLS E + L + F+E +
Sbjct:    1 MNAQDRSQSYRLAEGEKKLTYEPDTKIPNAGTFTLNREDHTLGNLLRMQLLQDSSVRFAGYQHPHPLVHHLLVKIQTTDPPANPIQAMSTSIEDLSSEFDFLEQRFKEDI 110
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BLAST of Ec-00_007330.1 vs. uniprot
Match: F0Y9X2_AURAN (RNA_pol_L_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9X2_AURAN)

HSP 1 Score: 122 bits (306), Expect = 2.800e-29
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDN-TPVDALSAATEDLSQEMEGLREVFQEQVAAAK 421
            MNAPER + ++L+DDEK++ Y  D KIP+AGTF I KEDHT+GNLLRMQ+L     +FAGY  PHPL N+  +K+QT   N TP+ A   A EDL  EM+ L   F+EQVA  K
Sbjct:    1 MNAPERHKKYQLDDDEKRMTYKNDEKIPNAGTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLTPIGAFQRAIEDLQSEMDILDRNFREQVAKKK 114
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BLAST of Ec-00_007330.1 vs. uniprot
Match: A0A7R9U3J4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3J4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.370e-28
Identity = 59/111 (53.15%), Postives = 81/111 (72.97%), Query Frame = 2 
Query:   83 MNAPERSESWR--LNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQV 409
            MNAP+RSE W     D+E K+ Y  DTKIP+AGTF I++EDHTLGNLLRM+LL D+ VRFAGY+ PHPLE+ I ++VQ   + TP+ +++ A + L Q+ + L + F+ QV
Sbjct:    1 MNAPDRSECWTSGYEDEENKVTYQKDTKIPNAGTFTIMREDHTLGNLLRMELLKDQNVRFAGYIAPHPLEHVIKLRVQAADNVTPIRSVTQAVDHLQQQFDTLSKSFESQV 111
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BLAST of Ec-00_007330.1 vs. uniprot
Match: A0A448ZBV9_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBV9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.520e-28
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDD--EKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 451
            MNAPER++S+ L++D  E K+ YT DTK+ +AGTF   KEDHT+GNL RMQLL D  VRFAGY+ PHPL   I +K+QTN     PV+ LSAA +DLS E + L   FQE     K   + E  G+
Sbjct:    1 MNAPERTQSFLLDEDTGELKIVYTADTKVTNAGTFRFNKEDHTVGNLFRMQLLRDPSVRFAGYLHPHPLVYFIDLKIQTNNSTVAPVEVLSAAIDDLSNETDHLMTQFQEACEEWKRTNDTEVSGN 126
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BLAST of Ec-00_007330.1 vs. uniprot
Match: A0A7S4A5Q2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5Q2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.030e-27
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 2 
Query:   83 MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAE 433
            MNAPER  S++L++ + ++ Y PD ++  AGTF I KEDHT+GNLLRMQLL D   RFAGY  PHPLE+  H+KV+T     PV+ +  A  DL QE+E L   F+++ A A+  A+
Sbjct:    1 MNAPERHRSYQLDEGQARMTYEPDQRVASAGTFTINKEDHTVGNLLRMQLLRDGDTRFAGYQLPHPLEHVCHVKVETAPGRAPVEVMGGAVTDLRQEVELLDRGFRDECARAREEAD 117
The following BLAST results are available for this feature:
BLAST of Ec-00_007330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JST3_9PHAE4.580e-75100.00RNA_pol_L_2 domain-containing protein n=1 Tax=Ecto... [more]
D7G4D0_ECTSI3.530e-6198.13RNA polymerase II core subunit n=1 Tax=Ectocarpus ... [more]
A0A836CIX8_9STRA1.980e-4366.12Putative DNA-directed RNA polymerase II 13.6 kDa p... [more]
K0SS38_THAOC7.390e-3162.38RNA_pol_L_2 domain-containing protein n=1 Tax=Thal... [more]
B8C993_THAPS1.790e-2960.78Probable dna-directed RNA polymerase II 13.6 kDa p... [more]
A0A6U1NZH5_9STRA2.600e-2956.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y9X2_AURAN2.800e-2955.26RNA_pol_L_2 domain-containing protein n=1 Tax=Aure... [more]
A0A7R9U3J4_9STRA3.370e-2853.15Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A448ZBV9_9STRA8.520e-2852.38RNA_pol_L_2 domain-containing protein n=1 Tax=Pseu... [more]
A0A7S4A5Q2_9STRA1.030e-2749.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11788074..11792788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3e-52
Seed eggNOG ortholog2880.D7G4D0
Preferred nameRPB11
Length1976
KEGG rclassRC02795
KEGG koko:K03008
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
Gene idEc-00_007330.1
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.RNA polymerase II activity
EggNOG OGsCOG1761@1,KOG4392@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007330Ec-00_007330Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11788074..11792788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007330.1Ec-00_007330.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11788157..11791267 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007330.1.1Ec-00_007330.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11788074..11788173 +
Ec-00_007330.1.2Ec-00_007330.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11788365..11788400 +
Ec-00_007330.1.3Ec-00_007330.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11789833..11789922 +
Ec-00_007330.1.4Ec-00_007330.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11790557..11790635 +
Ec-00_007330.1.5Ec-00_007330.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11791118..11792788 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0073305UTR:Ec-00_007330.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11788074..11788156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007330.1CDS:Ec-00_007330.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11788157..11788173 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0073303UTR:Ec-00_007330.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 11791268..11792788 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007330.1 ID=Ec-00_007330.1|Name=Ec-00_007330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=124bp
MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQL
LADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEG
LREVFQEQVAAAKHAAEQEQFGS*
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spliced messenger RNA

>Ec-00_007330.1 ID=Ec-00_007330.1|Name=Ec-00_007330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1976bp|location=Sequence derived from alignment at chr_00:11788074..11792788+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCCCAGGCACCGCTCTCCGCCGACCGCCGACCCAGCCAGCAGCACAGCAG
CACTAGACGCCACTGCCCCGGTCGGCCCAAGAAATGAACGCTCCCGAGAG
GTCGGAATCATGGCGACTGAACGACGATGAGAAAAAGCTTGCCTACACAC
CAGACACCAAAATCCCGCACGCCGGGACCTTCGAGATCATCAAGGAGGAC
CACACGCTCGGAAACCTGCTGCGAATGCAACTGCTAGCCGACAGGCAGGT
TCGGTTTGCCGGGTACATGCAACCTCATCCGTTGGAGAACAAGATCCATA
TCAAGGTCCAAACGAACGGTGACAACACACCGGTGGATGCTTTATCGGCG
GCGACTGAGGATCTGTCACAGGAGATGGAAGGGCTGCGGGAAGTTTTCCA
AGAGCAGGTTGCGGCTGCCAAGCACGCCGCGGAGCAGGAGCAGTTCGGGT
CATAGTTTTATGTGTCGTTGTGTAGGATGGCTTTGCGTCGTTCGCTGTTA
GCGGCGGAGCAACCGCGTTGTTGCTGGGTACCTCTACCGCTCGCCGCGAT
TCCTTGCGCGGCCAGATCGTTGTTTTCTCCCGCGTGCCTTGTGTATGTAC
GTACAGTGAATGTTGTGTTGTATTGTTGACATTGGACGGCGTTAATTTAC
AGGCTCATGTGTGAAAGTGGCGGACGCCTTCGTTGTCCACGTTTTCTTGT
TTCGCCGGTGGATAGCGAGCACGTGCTGCATCCCCCCGCTCCTACCAAAC
AGACGTTCCCGGAAGGGTGTGTAGTGGGTCGTGGTTGTCACGACCAAACG
TAGTGTTAACCTCATGGCCTGCTGTGCAGTTCTATCAGCCGGTGCATGGG
CAACCTAGCCGTGTTGCAGTTGGCACTGTCACCAAAAAAATAAATCACAA
CTGTTCATTTTTCGTTTTTTTTTTTTTTCTCTTGGTGAAACTAATACGTG
CATCGAAAGGAGGCCTACAACATATTTTGGTACCATTCCACACTCGTGGG
TGCCTTCCTCTCGACCATGCCTCACCAAGAGGCTGCCGTGGATCCCCAAC
ACATGCCCTTCCGCTTCTTTATCACCAGCAAGAAAAAGCCTGCACACGCC
AGGCTCTATACCGTAAGCCGGTGGAATCATCACCAGCGGCTGTTTGCTGC
AAAATACCGGGCCAACGACTTTCTTACTACCCTTTTTGGACGAGCGATTA
GGCACGCATTCGGAGTCCCCGGCGGCCGCTCCGCAAACGATGCCCAACGC
AAGCGGCCACCGCGCCCCTCCCCCCTCCAACTCTCAGCCCGACTTCGGCC
CCTCCAGCTGTTTTCGAAATTTGCCCAGCTGAAAGAAAAAGGGCGCACGG
GAGGACAAAGTAGACGTTGGTGAAGTCGACAAAAATTCGGAAATGCAAAC
GTACGTATGCATACGGTGTTCAAATTCGACAGCATGATCGATCCTTTTTC
TCCTCGACCTTTTGGTCTCAACGTTACGAAACGAAGAAGCCCATCAATGA
ATGCACACCATGTAAACCTCTCTTGTTATTTCACGCCAGACCACAAAAAA
AAACGAGATCTTGCGGTGTTCCTCTGTGCCTTCTTCTACAGCGGTATGAC
ATACAGCGTTTCACGTCTACAGCCTAGACGACATTGTGGGTCGTCCTTCC
TGTGCTACTAGTCCACCGCACCAGGGCAATCCTCGAGACGCGGCCCAATC
GTTGCCGTCCTCTGAAAATCCCCTCTCATCTAATATATCCGGTTACTTCC
TCATTCGGTACTCTTAAAGGGTGGGGATAGCGGAAAGTCGACTTGAAACA
TGTGCGTTTCACAGCAGGCACCTCTTCTCTCCATCTCTTGTCTCACCATT
AGAAGCGCTCTGTCGAGGCCTGGCTTGTCTCCATCCAAGCTGCGACAACT
ATCAGCCGTGTAGGGGGGGTCTATCCTCACGGACTCCAAGATCACGATGC
TCTGGTCGCTCCACGAGCAGTCCAAA
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protein sequence of Ec-00_007330.1

>Ec-00_007330.1 ID=Ec-00_007330.1|Name=Ec-00_007330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=124bp
MNAPERSESWRLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQL
LADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEG
LREVFQEQVAAAKHAAEQEQFGS*
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mRNA from alignment at chr_00:11788074..11792788+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007330.1 ID=Ec-00_007330.1|Name=Ec-00_007330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4715bp|location=Sequence derived from alignment at chr_00:11788074..11792788+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCCCAGGCACCGCTCTCCGCCGACCGCCGACCCAGCCAGCAGCACAGCAG
CACTAGACGCCACTGCCCCGGTCGGCCCAAGAAATGAACGCTCCCGAGAG
GTTCGTCAATGTTTTCTTTTGTGTGGTGACCTTTGAGAAAGCTGGGAATG
CGCTTCTCCATCTGGCACGCATCCGCTGTTGCTCGCTTGATTGATCGCCC
CCCGCAGCTGCGGAGCTACTGCTGTCTGCTGTACGGATCCTGACCTTCCC
CCGTCAAACCGCGCTGTTTCTCTCTGTCTGATTCCTCTCAGGTCGGAATC
ATGGCGACTGAACGACGATGAGAAAAAGTGAGTCCATTCGTTGCGGTGAT
TCGTCGTGCCATCGGCGGGGCAATGCCGGAGTACGGCAAAATGGGTTAGC
GCACCTGTGCAGCGCTGTACAATAGCACGTACATACGGCGGTTGAATACA
ACAGCAGTTTTGATCTGCTGGATTGCTGGATTGGAACTTAGAAACAAGCA
GCAGAGCACACATCCTGTGCAAGATCGCACTACAGACGCGCAGAATTGTA
GAGAAATCAACACTCTGTTGGGTCGGAGTGATTTTTTTACCGGTTGCCTC
GTTACTTTTCCAGCAACCTTTACCTCGCCGGTCCACGGCGCTACGCTACG
ATACGTGCCTGACTGCTGCTCCTATTTTGAGATTAACCTTGACCTCTGAG
GGGGCCTGCGCGACATGGTGTGGGCGATCTGGTCAACCGATCCCTACTGG
ATTCTGCCAAACCAAACGTGCCCGACTCAAACGCAGTTGCCCCTACTGCT
GTATCGTGAGCCGAGATCTTGAGCTCTGAGAGGGCCTGTGCGATTGTGTG
GGGCACGTGATCGGGACCGCCTACGCAGGGTTTTTAGAGTATCTATAAGA
AAAGAGAAAGCATAGGGAGGGGGCGCGCAGACCGTATCCCTATCCCTAAC
CCTAACTCTAAAGCACGGGTTGAATAGTTTATCCCATATGTTTGCTTAAT
TAATCTTGCTGGGCTGCGTAGACTACCGCGTGATCGATGGACCGAGTCTG
ACGGCTCCGATCTGCTTGGACCCTAGCCCTATCGGCCTGGGCGATACCCC
CACACGATCGCGCAGGCCCTCTCAGGGGTCAAGATCTCGTCGTCTCACGA
AACGGGCAATGTGCCTCAGTCAGGCATTATTTCATATGATCGTATGACGT
TGACAGACGCCGTAGGTACAGCAGTAGCGACGTGGACCGGCGAGACGAAG
GTCAGGGTAGGGTTTGCAGGCGGAGGTTGGGATCTAAAGCATACATGTGC
GTACGGAAGGCAAGGAATTTGTCTATGGAGGATTGATTGCGTGTTGGAAA
AAGGGATTTAGTAAACCAAACTACAACCCCGCACAATAGACCCCCACCTT
CCGTCTTTTATCGCAGTCTTGGGGCGTCTATGTCAATCGCTACGTTTGGT
TCATGCTCCCGTTGATCCACGCCACCTCACCGCCGACTGCTTTTTCTGCC
ATATTCGGATCCTTGGGGTGCCTCCTACCGACCTATGCGTACGCCCTCGT
GGTTAACACAAACCTATGGGCCGCGGTAGGCTTGGGTCTGCTGGAGCGAC
GGAAGCTGCTTCACTTTTTCCTTTTCCCTTTTCGAAGGCCCTTCTCTCTC
GTTCGTCTTCCCCCTTCGAATCACAATGGTGTACCTACCCATTCCCGAAA
GAATCAGACTTTCGGAAGGAAGAACTTAGTATCGCAGCCGCTCCCCCCCG
CCCGCGCAGGCTTGCCTACACACCAGACACCAAAATCCCGCACGCCGGGA
CCTTCGAGATCATCAAGGAGGACCACACGCTCGGAAACCTGCTGCGAATG
TGAGCTGAGAAGCGCGCTTGAGAGGATGGGTTGTTGTGCATGCCCGAAGG
ATGAGGAAAGTCTCTCAAGGTCCACGCGTTTGTGTTGCTACAGCTGCTGC
TGTGGTAGACACAAGCCCCACGAGCTTTGCCAATTGGTTTGTGTGAGGGA
CTGTGATTGCCTTGGTCTATCGACCATTTCACCACGTCTCTCTCTCATTG
GAGAACGTACTGCCTGTGTGCTGTGTAGTCATTCGCGTCTAGGGAAGTTG
GGAGCGGCTGAGGCCATTTTCGTCGGCGGCCTGCGCTAGAGCTCGGGACA
CGGTAGGCGAAGAGTAACTACACTGACAGATGTGGCGTGTGCGGTACAAA
TGATTCCCACAACGGTGTTGATAGGTTGACATTGTAGATTTGTTGTAGTG
CGTCACAATCACGGCGCGGCGCCTATGTACGACAGCGGTTCTTCCTCACC
ACCTTGTTTTTTCTCGCTGCTGCGTATACACTGCTTTTTGAGGCGGAAAG
GTAGGAAATCAATTCAATTGTTCCGGTGTACAATTGGTGGAGGCGTTGTC
GAGGGTTAAACTTCGTTTGTGTCCTCTTCATCCCTGCCCCGTTCGGCCCC
GTCGCTTTTTCCTCTGTCCGTTGTGTGCGACAGGCAACTGCTAGCCGACA
GGCAGGTTCGGTTTGCCGGGTACATGCAACCTCATCCGTTGGAGAACAAG
ATCCATATCAAGGTGCCCTTTGCAACAAACTTTTCGCGTCCCAGTGTGGC
GCTGTACGCGGCCATGTAGGTCTTATCAGACCCATCGACCCCGCTGAAAA
ATCAGAGATGGCGGGGCAATGGACTTGGAGCTGAGGAACGCCACCGCTGT
TGATGAATGCCAGGCGGAGATGCAGCAAACGCGCTAGAACCCATAAGTGC
TTCGGATCGGAGAACAATGTCTAGCATTCACCATGAGCAAACGATGGCAC
GTTTGCGTTGCGGGTCACTCAGCGAAATCCTGTATTCTACTGCAGTCCAT
CTCCAACACACGGACTTTGATACCAGACGATTTGCCTCGGTATGTACTTC
AGCAAGGGCATCCACGTCTTTTTTTCTCACGCCACGCACATTTCTAGGTC
GTACGATCAAACAAACGCACTCGAAAAGCTCACTTGCAACTGATGTACCC
ACGCGTTTGAAAACCACATCAAACATAAAAACATGTTTTGTCAGGTCCAA
ACGAACGGTGACAACACACCGGTGGATGCTTTATCGGCGGCGACTGAGGA
TCTGTCACAGGAGATGGAAGGGCTGCGGGAAGTTTTCCAAGAGCAGGTTG
CGGCTGCCAAGCACGCCGCGGAGCAGGAGCAGTTCGGGTCATAGTTTTAT
GTGTCGTTGTGTAGGATGGCTTTGCGTCGTTCGCTGTTAGCGGCGGAGCA
ACCGCGTTGTTGCTGGGTACCTCTACCGCTCGCCGCGATTCCTTGCGCGG
CCAGATCGTTGTTTTCTCCCGCGTGCCTTGTGTATGTACGTACAGTGAAT
GTTGTGTTGTATTGTTGACATTGGACGGCGTTAATTTACAGGCTCATGTG
TGAAAGTGGCGGACGCCTTCGTTGTCCACGTTTTCTTGTTTCGCCGGTGG
ATAGCGAGCACGTGCTGCATCCCCCCGCTCCTACCAAACAGACGTTCCCG
GAAGGGTGTGTAGTGGGTCGTGGTTGTCACGACCAAACGTAGTGTTAACC
TCATGGCCTGCTGTGCAGTTCTATCAGCCGGTGCATGGGCAACCTAGCCG
TGTTGCAGTTGGCACTGTCACCAAAAAAATAAATCACAACTGTTCATTTT
TCGTTTTTTTTTTTTTTCTCTTGGTGAAACTAATACGTGCATCGAAAGGA
GGCCTACAACATATTTTGGTACCATTCCACACTCGTGGGTGCCTTCCTCT
CGACCATGCCTCACCAAGAGGCTGCCGTGGATCCCCAACACATGCCCTTC
CGCTTCTTTATCACCAGCAAGAAAAAGCCTGCACACGCCAGGCTCTATAC
CGTAAGCCGGTGGAATCATCACCAGCGGCTGTTTGCTGCAAAATACCGGG
CCAACGACTTTCTTACTACCCTTTTTGGACGAGCGATTAGGCACGCATTC
GGAGTCCCCGGCGGCCGCTCCGCAAACGATGCCCAACGCAAGCGGCCACC
GCGCCCCTCCCCCCTCCAACTCTCAGCCCGACTTCGGCCCCTCCAGCTGT
TTTCGAAATTTGCCCAGCTGAAAGAAAAAGGGCGCACGGGAGGACAAAGT
AGACGTTGGTGAAGTCGACAAAAATTCGGAAATGCAAACGTACGTATGCA
TACGGTGTTCAAATTCGACAGCATGATCGATCCTTTTTCTCCTCGACCTT
TTGGTCTCAACGTTACGAAACGAAGAAGCCCATCAATGAATGCACACCAT
GTAAACCTCTCTTGTTATTTCACGCCAGACCACAAAAAAAAACGAGATCT
TGCGGTGTTCCTCTGTGCCTTCTTCTACAGCGGTATGACATACAGCGTTT
CACGTCTACAGCCTAGACGACATTGTGGGTCGTCCTTCCTGTGCTACTAG
TCCACCGCACCAGGGCAATCCTCGAGACGCGGCCCAATCGTTGCCGTCCT
CTGAAAATCCCCTCTCATCTAATATATCCGGTTACTTCCTCATTCGGTAC
TCTTAAAGGGTGGGGATAGCGGAAAGTCGACTTGAAACATGTGCGTTTCA
CAGCAGGCACCTCTTCTCTCCATCTCTTGTCTCACCATTAGAAGCGCTCT
GTCGAGGCCTGGCTTGTCTCCATCCAAGCTGCGACAACTATCAGCCGTGT
AGGGGGGGTCTATCCTCACGGACTCCAAGATCACGATGCTCTGGTCGCTC
CACGAGCAGTCCAAA
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Coding sequence (CDS) from alignment at chr_00:11788074..11792788+

>Ec-00_007330.1 ID=Ec-00_007330.1|Name=Ec-00_007330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=372bp|location=Sequence derived from alignment at chr_00:11788074..11792788+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAACGCTCCCGAGAGGTCGGAATCATGGCGACTGAACGACGATGAGAA
AAAGCTTGCCTACACACCAGACACCAAAATCCCGCACGCCGGGACCTTCG
AGATCATCAAGGAGGACCACACGCTCGGAAACCTGCTGCGAATGCAACTG
CTAGCCGACAGGCAGGTTCGGTTTGCCGGGTACATGCAACCTCATCCGTT
GGAGAACAAGATCCATATCAAGGTCCAAACGAACGGTGACAACACACCGG
TGGATGCTTTATCGGCGGCGACTGAGGATCTGTCACAGGAGATGGAAGGG
CTGCGGGAAGTTTTCCAAGAGCAGGTTGCGGCTGCCAAGCACGCCGCGGA
GCAGGAGCAGTTCGGGTCATAG
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Synonyms
The feature 'Ec-00_007330.1' has the following synonyms
Synonym
Esi0552_0011
Esi_0552_0011