Ec-00_007320.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007320.1
Unique NameEc-00_007320.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length227
Homology
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BLAST of Ec-00_007320.1 vs. uniprot
Match: D7G4C9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C9_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 1.090e-155
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 3 
Query:  171 MFSPPAPMMRQYCERNELGTGPVLDEDEGEEVLLRNEEVTLAFSPESPEGLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDADVPPEDGEGDLANGHGAGANGHAPSS 848
            MFSPPAPMMRQYCERNELGTGPVLDEDEGEEVLLRNEEVTLAFSPESPEGLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDADVPPEDGEGDLANGHGAGANGHAPSS
Sbjct:    1 MFSPPAPMMRQYCERNELGTGPVLDEDEGEEVLLRNEEVTLAFSPESPEGLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDADVPPEDGEGDLANGHGAGANGHAPSS 226
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A7S3HJ42_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ42_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.630e-26
Identity = 89/220 (40.45%), Postives = 115/220 (52.27%), Query Frame = 3 
Query:  189 PMMRQY--CERNELGTGPVLDEDEGEEVLLRNEEVTLAFSPESPE-GLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEE----------DVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSA-LSAEQERVLAHLDSVLVVPEGMEAVNGQFDDADVPPEDGEGDLA 806
            P MR+Y  C   +    P L EDE  +  L +  V L+F    P  G G   VT+ RV+WL   +   A+DFDV YI LHAI++DP ++P PCIYCQL  EE           +VL E F APS  E   LQA+F A S AA  NP+P ++    G++E        L+++     L AEQ R L HLDSV  +PE      G+ D      E+GEGD A
Sbjct:    8 PGMRRYVPCTAED-DQVPELWEDETIDYELND--VELSFGGAKPVIGSGKFIVTSKRVLWLGVGES--AYDFDVPYIALHAITRDPDSYPKPCIYCQLDCEEXXXXXSDEEETEVLDEMFLAPSSEE--HLQAMFNALSAAALNNPDPLEDWEQEGDDE--------LIYNTDEVELGAEQARTLDHLDSVFNIPECYAQGEGEEDCGXXXXEEGEGDQA 212
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A812X7B4_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X7B4_SYMMI)

HSP 1 Score: 103 bits (256), Expect = 2.540e-23
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 3 
Query:  258 EEVLLRNEE-VTLAFSPESPEGLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEE----EDVLKEAFFAP-SDGEAATLQALFEAFSKAAELNPEP 593
            EE L+  +E V   F+PE+P   G+L +T+ RV+W S E    A+DFDV YI LHA++ DP +FP PC+YCQL VEE    ED   E +F P S+G+   LQ +F+AFS+AA LNP+P
Sbjct:    1 EETLMYTKEGVDFTFNPETPTIPGTLYITSRRVIWASEE---LAYDFDVPYIVLHAVTHDPSSFPRPCLYCQLDVEEGEGAEDEPTEMYFVPASEGD---LQEMFDAFSQAAVLNPDP 112
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A067D7X7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7X7_SAPPC)

HSP 1 Score: 103 bits (257), Expect = 1.620e-22
Identity = 72/194 (37.11%), Postives = 105/194 (54.12%), Query Frame = 3 
Query:  234 PVLDEDEGEEVLLRNEEVTLAFSPESPE--------GLGSLTVTTTRVVWLSSED--QSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGME----AVNGQFDDAD 773
            PVL  DE   +L     + + FS    E        G G+L VTT RVVW++S+       + +D+ Y+ LHAIS+D  +FP PC+YC L VE++  ++E  F P D  + TLQA+F+AFS +A LNP+  ++     +EEG        +++     +  Q  + AHLDS+L V   +      V GQFDDAD
Sbjct:   15 PVLTADES--ILSVFPSIRMFFSEYDEEDEASVVAKGAGNLVVTTKRVVWITSQPGMAEVGYAWDMRYLSLHAISRDTSSFPEPCLYCHLDVEDD--VQEVRFVPDDS-SKTLQAMFDAFSASAALNPDDDED-----DEEGE------WIYNEDEVEAGAQMDIAAHLDSILTVSPAIAQAHGGVAGQFDDAD 192
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A6G0XMC2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMC2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.320e-22
Identity = 74/194 (38.14%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  255 GEEVLLRNEEVTLAFS-------------PESP----EGLGSLTVTTTRVVWLSSEDQSKA--FDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSALSAEQERVLA-HLDSVL-VVPEGMEAVNGQFDDAD 773
            G  VL+ +EE+  +F+              +SP    +G G+L VTT+RVVW+ S++ S    + +D+ Y+ LHAIS+D  +FP PC+YCQL VE+E  + E  F P D E   LQALF+AFS++A LNP+        G         G  +++     +  +E  LA H DS+L V P   +  +GQFDDAD
Sbjct:   13 GAPVLIDDEEILASFTNVRMFTNTYGPGEDDSPVMDAKGSGNLYVTTSRVVWVFSQNGSGVVGYAWDMTYLSLHAISRDLSSFPEPCLYCQLDVEDE--VNEIRFVPQDPEK-QLQALFDAFSESAALNPDXXXXXXXXG---------GDWIYNEEEVSTGAREAALAAHFDSILQVAPSLQQHADGQFDDAD 194
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A058ZWV5_EUCGR (Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A058ZWV5_EUCGR)

HSP 1 Score: 102 bits (254), Expect = 9.630e-22
Identity = 63/167 (37.72%), Postives = 89/167 (53.29%), Query Frame = 3 
Query:  195 MRQYCERNELGTG-PVLDEDEGEEVLLRNEEVTLAFSPESPEGLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDV-----------------LKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGG 641
            +RQ+ +R   G G P+LD D GEE++     V +     +PE  G+L ++T +V+WLS  D++K +  D   I LHA+S+DP  +P+PCIY Q+ +E ++                  +KE    PSD     L  LFE F + AELNPEP        EEEG GGG
Sbjct:    5 LRQFSQRTGDGAGEPILDADNGEELMHVQPGVAIVLGGRTPEARGTLYISTHQVIWLSDVDRNKGYAVDFLSISLHAVSRDPEAYPSPCIYAQIEIEVDEEGADGSDSEHDETLDLSKVKEMRLVPSDPN--QLDTLFEVFCECAELNPEPS-------EEEGEGGG 162
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A1V9YCT0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCT0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.240e-21
Identity = 67/168 (39.88%), Postives = 97/168 (57.74%), Query Frame = 3 
Query:  315 EGLGSLTVTTTRVVWLSSEDQSK--AFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGA-----------GEEEGLGGGAGGLVFDHGS-ALSAEQERVLAHLDSVLVV-PEGMEAVNGQFDDAD 773
            +G G+L VTT RVVW+S +  +    + +D+ ++ LHAIS+D  +FP PC+YC L +E++  ++E  F P D    TLQA+F+AFS +A LNP+  D+G               +EEG        +++    A  AEQ  + AHLDS+L V P    +V GQFDDAD
Sbjct:   48 KGAGNLVVTTKRVVWISMQSHAPEVGYAWDMRFLSLHAISRDVSSFPEPCLYCHLDIEDD--VQEVRFVPEDN-TKTLQAMFDAFSASAALNPDDEDDGPRPHGRSRTQACMIDDEEGE------WIYNEDEVAAGAEQMDIAAHLDSILKVSPAITGSVAGQFDDAD 206
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BLAST of Ec-00_007320.1 vs. uniprot
Match: H3HE92_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HE92_PHYRM)

HSP 1 Score: 99.0 bits (245), Expect = 9.030e-21
Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 3 
Query:  228 TGPVLDEDEGEEVLLRNEEVTLAFSPESPEGLGSLTVTTTRVVWLSS-EDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDAD 773
            T  V +ED+GE + L +  +T           G L VTT RV+WL +       + +++  + LHAIS+DP  FP PC+YCQ++ ++   + E  F P+D +  TLQ LF+AF KAAE+NP+  +E     +++G       +  +   A  A   ++ AHLDSVL V   ++   GQFDDAD
Sbjct:   41 TSDVGEEDDGEALTLPHSGLT-----------GGLFVTTRRVIWLGALAGPHVGYAWEMGDVTLHAISRDPAAFPKPCLYCQMSSQD---VSEVRFVPADDK--TLQDLFDAFCKAAEMNPDDEEE-----DDDGW------ICDEDEVADGARAAQLAAHLDSVLHVSPELQTEAGQFDDAD 196
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A5D6Y283_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y283_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.190e-20
Identity = 75/199 (37.69%), Postives = 105/199 (52.76%), Query Frame = 3 
Query:  225 GTGPVLDEDEGEEVLLRNEEVTLAFSPE----SPEGL------GSLTVTTTRVVWLSSEDQSKA-FDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEGLGGGAGGLVFDHGS-ALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDADVPPE 785
            GT  +L E EG++ L    E  +A  P+    + E L      G+L VT+ RVVW+     +   + +D + + LHAIS+D   FP PC+YCQ+   + D + E  F P D +   LQA+F+AFS++AELNP+        G+++G        VFD    A  A    + AHLDSVL V   +  V GQFDDAD   E
Sbjct:   14 GTPLLLREGEGDDNLA---EALVAHFPDVALHASEALALDSAVGALFVTSKRVVWIGDRAAAHVGYGWDTSRVTLHAISRDESAFPRPCLYCQV---DSDDVSEIRFVPLDPD--QLQAIFDAFSRSAELNPDDXXXXXXXGDDDGW-------VFDKDEVANGARAAEIAAHLDSVLRVSPALLPVAGQFDDADEADE 197
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BLAST of Ec-00_007320.1 vs. uniprot
Match: A0A1U8LBF1_GOSHI (chloride conductance regulatory protein ICln-like isoform X3 n=33 Tax=Gossypium TaxID=3633 RepID=A0A1U8LBF1_GOSHI)

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-20
Identity = 62/165 (37.58%), Postives = 90/165 (54.55%), Query Frame = 3 
Query:  195 MRQYCERNELGTG-PVLDEDEGEEVLLRNEEVTLAFSPESPEGLGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQLAVEEEDV-------------------LKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGEEEG 629
            +R +  R   G+G P+LD D GEE++     V++A    +PE  G+L +TT +V+WLS  D+ K +      + LHA+S+DP  +P+PCIY Q+  E ++V                   ++E  F PSD  A  L  LF+ F + AELNPEP +EG    EEEG
Sbjct:    5 LRHFTARAGNGSGEPILDTDNGEELVHVQPSVSVAVGDRAPESPGTLYITTRQVIWLSELDREKGYAVYFLSLSLHAVSRDPEAYPSPCIYTQIETEADEVEDESEDSDSECSEVLDLSKIREIRFIPSD--ANQLDTLFQVFCECAELNPEPIEEG----EEEG 163
The following BLAST results are available for this feature:
BLAST of Ec-00_007320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4C9_ECTSI1.090e-155100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HJ42_9STRA2.630e-2640.45Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812X7B4_SYMMI2.540e-2350.00Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A067D7X7_SAPPC1.620e-2237.11Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0XMC2_9STRA6.320e-2238.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A058ZWV5_EUCGR9.630e-2237.72Uncharacterized protein n=4 Tax=Myrtoideae TaxID=1... [more]
A0A1V9YCT0_9STRA2.240e-2139.88Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
H3HE92_PHYRM9.030e-2136.61Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6Y283_9STRA1.190e-2037.69Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1U8LBF1_GOSHI1.600e-2037.58chloride conductance regulatory protein ICln-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11784038..11788093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.1
Seed ortholog evalue1.2e-123
Seed eggNOG ortholog2880.D7G4C9
Preferred nameCLNS1A
Length1129
KEGG koko:K05019,ko:K18405
KEGG TC1.A.47
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
Gene idEc-00_007320.1
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0005215,GO:0005216,GO:0005229,GO:0005253,GO:0005254,GO:0005261,GO:0005267,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006820,GO:0006821,GO:0006884,GO:0008150,GO:0008152,GO:0008324,GO:0008361,GO:0008380,GO:0008509,GO:0009987,GO:0010467,GO:0015075,GO:0015077,GO:0015079,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015672,GO:0015698,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019725,GO:0022607,GO:0022613,GO:0022618,GO:0022803,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0030001,GO:0031974,GO:0031981,GO:0032535,GO:0032991,GO:0034220,GO:0034622,GO:0034641,GO:0034708,GO:0034709,GO:0034715,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045794,GO:0046483,GO:0046873,GO:0046982,GO:0046983,GO:0051179,GO:0051234,GO:0055085,GO:0061778,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071804,GO:0071805,GO:0071826,GO:0071840,GO:0071944,GO:0090066,GO:0090304,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662,GO:0120114,GO:1901360,GO:1902476,GO:1902494,GO:1990234,GO:1990935
EggNOG free text desc.cell volume homeostasis
EggNOG OGsKOG3238@1,KOG3238@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007320Ec-00_007320Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11784038..11788093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007320.1Ec-00_007320.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11784315..11787922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007320.1.6Ec-00_007320.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11784038..11784412 -
Ec-00_007320.1.5Ec-00_007320.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11784744..11784826 -
Ec-00_007320.1.4Ec-00_007320.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11785190..11785389 -
Ec-00_007320.1.3Ec-00_007320.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11785604..11785727 -
Ec-00_007320.1.2Ec-00_007320.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11786180..11786262 -
Ec-00_007320.1.1Ec-00_007320.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11787830..11788093 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0073203UTR:Ec-00_007320.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 11784038..11784314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007320.1CDS:Ec-00_007320.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11784315..11784412 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0073205UTR:Ec-00_007320.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11787923..11788093 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007320.1 ID=Ec-00_007320.1|Name=Ec-00_007320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=227bp
MFSPPAPMMRQYCERNELGTGPVLDEDEGEEVLLRNEEVTLAFSPESPEG
LGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQ
LAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGE
EEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDA
DVPPEDGEGDLANGHGAGANGHAPSS*
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spliced messenger RNA

>Ec-00_007320.1 ID=Ec-00_007320.1|Name=Ec-00_007320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1129bp|location=Sequence derived from alignment at chr_00:11784038..11788093- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCGGAGAGCGGTGCCTGGGGGGTCGCATGCTTGGATTCCGGGGGGGTACG
TTCGTTTTTTCTTGTTTGCGATCTCGGCCCCTTCCGCTGTCCCCGCCCTG
CGCCGTTGCCACACACAGCTACAGCTTTGCCTTTGTCACCACCGTACAGC
TGCCCTAACGCCTAACACAGCATGTTCTCTCCTCCAGCGCCCATGATGCG
TCAATACTGTGAACGTAATGAGCTTGGAACAGGGCCTGTCTTGGATGAAG
ACGAGGGAGAGGAGGTACTCTTGCGCAACGAGGAAGTGACGCTAGCTTTC
TCGCCGGAAAGCCCCGAGGGCCTGGGCAGCCTCACCGTCACCACCACACG
AGTGGTGTGGCTCAGCAGCGAAGACCAGTCGAAGGCATTCGACTTCGACG
TGGCGTATATCTGTCTTCACGCCATATCCAAGGACCCCGGAACATTCCCG
AACCCGTGTATCTACTGTCAGCTGGCGGTGGAAGAAGAAGACGTTCTGAA
AGAGGCGTTTTTTGCTCCAAGCGACGGGGAAGCGGCGACCCTCCAGGCGC
TTTTCGAGGCTTTCTCCAAGGCCGCGGAATTGAATCCAGAGCCAGGGGAC
GAGGGGGCAGGGGCGGGCGAGGAGGAGGGGCTGGGGGGAGGGGCGGGGGG
GCTGGTCTTCGACCACGGCAGTGCACTAAGTGCGGAGCAGGAGAGAGTGC
TAGCGCATCTGGACTCTGTTCTGGTCGTGCCGGAGGGAATGGAGGCTGTA
AATGGTCAGTTCGACGATGCAGACGTGCCGCCGGAAGACGGGGAGGGCGA
CCTTGCAAACGGGCACGGCGCAGGCGCGAACGGGCACGCCCCAAGTTCAT
GAAGCGTTACCTGAAAACAGTACTGTAGCCATCGTCCGCGCTGTTGTCTG
GACGTATGCACGTATTTGGATCGCTGGAAGCACGTATCTGGCTTGCCCCA
GCAGCAGAGCAGCTGCAGAGGAAGGATGAAGCAAGAGGTGGCTACTGCGT
AGCGCTCTGAGGCATGTACGCATCTGGTTCTCTGGACGTACGTATCTCGT
GCTCTTGACGTAACGCATTTGATCTAGGCGTACGTATGTGGCTTGCGCCC
CAGCAGCAGAGCAGCTGTAGAGGAAGGGC
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protein sequence of Ec-00_007320.1

>Ec-00_007320.1 ID=Ec-00_007320.1|Name=Ec-00_007320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=227bp
MFSPPAPMMRQYCERNELGTGPVLDEDEGEEVLLRNEEVTLAFSPESPEG
LGSLTVTTTRVVWLSSEDQSKAFDFDVAYICLHAISKDPGTFPNPCIYCQ
LAVEEEDVLKEAFFAPSDGEAATLQALFEAFSKAAELNPEPGDEGAGAGE
EEGLGGGAGGLVFDHGSALSAEQERVLAHLDSVLVVPEGMEAVNGQFDDA
DVPPEDGEGDLANGHGAGANGHAPSS*
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mRNA from alignment at chr_00:11784038..11788093-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007320.1 ID=Ec-00_007320.1|Name=Ec-00_007320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4056bp|location=Sequence derived from alignment at chr_00:11784038..11788093- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCGGAGAGCGGTGCCTGGGGGGTCGCATGCTTGGATTCCGGGGGGGTACG
TTCGTTTTTTCTTGTTTGCGATCTCGGCCCCTTCCGCTGTCCCCGCCCTG
CGCCGTTGCCACACACAGCTACAGCTTTGCCTTTGTCACCACCGTACAGC
TGCCCTAACGCCTAACACAGCATGTTCTCTCCTCCAGCGCCCATGATGCG
TCAATACTGTGAACGTAATGAGCTTGGAACAGGGCCTGTCTTGGATGAAG
ACGAGGGAGAGGAGGTGCGATGTTTGAGAGCTGTCGGTGCGGCGGATTTG
ATATTTTGAACACGAGCAAGTCTTTGGTTCTCCAGCGTGTGATGTTGTGG
TGCACGGCAGTATATCCGGCGCGCACCCTCTCTGGGTCTCTGGATCTGGG
CAAACAGTGAAGCATGCGTTGACACATTGCCGAGTGTCGTCGACACACAC
ATGCCTAAAACTTGCTCTCATGCCCTATTGTATTCAAGACGAAATAGTTT
CCGATTCTGGGAGGTTGCGTTGTCTCTGACCTCTTGTCCTGTGTCTCACT
TCAACAAACGAGGTATAGCTACACAGATGGAGATAAACGGTGCCCGCAGG
CGAGAGAGAGAGTAAAAAGATACCCGCAGTTTTCTGATTGACCAATTTTT
TCGAGAGAGGAAAAAGGCGCCTGCAGTTGCTAAAAGTGGCCAATTTTTTC
AATGGAGAGTTCTGATTGGTCAATAATCTCTGGTCGACCAAGGGTGAAGA
TCGACGATCGACGGGAACCGGGTGTGGCAGAAGCAACCGACCGACCCTTC
GGCGCTGCACAACAACATCCTCGTCGCCGACCACGTCACTGCGCTGGCCC
CGTTCTTGGGACCGTTGGCGGAGTTGTGCAAGCCGAGACAATCTACCGAT
TGGTTCCCTGAAGCAGAGAGCACAACTGCATACGAAGTCCGGCCGGCCGC
ACCGCACCGCCGCCCGAACGTCGTATACTGTTGCGCTCTCTGCTTCAGGA
ACAGTCGGTAGACTGTCTCGGCTTGCACAACTCCGCCAACGGTCCCAAGA
ACGGGGCCAGTGCAGTGACGTGGTCGACTACGAGGATGTTGTTGTGCAGC
GCGGAAGGGTCGGTCGGTTGCTTCGGCCACACCCTGTTCCCGTCGACCTT
CACTCCTCGGTCGACCAGGGATTTTTGGCCGACCAGAGATCTCCTTTCGA
AAAAATACACAAATCGCTCGGTTGCTCTACACATAGCCCAGGGACGCTCT
TTCGATTGATGGTCCCTGCCCTCTCGTCTTTGTTAAAAAAGCACATGACC
TTTCTAGCCTAATATTAATATTTACAGGCATGGAAATAGCAGCGAGGAAG
ACGCGGACGATGGCAAACCTCCACGTACACACCATGAGAGCATGGTAAAC
ACGTGCAGTTTCTTCTGTTATTGCTACGGCATTTGTCTCTTAGGCGGAGA
GTAGCGTAGACTTCCCTATGACGCTCGGTCACAGGGTCCCAGATCGTGGC
CCTTTTGAAGCATCTTGTGCTTTCAGACTCGCGTATTTTCATTGGTCAGC
CGCTTAGCGCGGTCGATGCTATTAAGAAAATACACACACAACAGTCACAC
GAGCGTCGGTACTGTACGTTCGTCGGCGCGAACACTCTCAACCCTCGTAG
TAGAGGCACGGCCGCAATGGTGAAACAAGAGCCAAGCATCAACACAGCTA
TCGTCAACAGTGATGGTGTTCGACGACCCCTCCCACACACACACACCCCT
CCCCACTCCCCGACGCGGGCACTCCGCCGACGTTTCTCTCGCCCCCGCCG
CCGTTGCTAACCATGAACACATCATCGGCAGGTACTCTTGCGCAACGAGG
AAGTGACGCTAGCTTTCTCGCCGGAAAGCCCCGAGGGCCTGGGCAGCCTC
ACCGTCACCACCACGTGAGTCGCCCAGGCTCCAAGTTTCCATTGCTAACA
GTCTCTCCCCTCCCTGACCCCGCCTTCCCCGCGACTTGATCGAGCCTCAC
GTTTCGATAAACGGCAAGTCTTATGGTGCAACGCCAGCTTTGTGAATATG
ATGGTGCGGAAGAGATAAAATCCTGTGTACGGACCCTGGCTGTCTCACAT
TTTTTCGGAAGCTCTATCCCCCCGGTGGTCAACCTTCGAGTTCTGCCTTG
TCAGGGAAACATGCGTGTGCAGATCATATCAGGACGTTTTCGTATACCGC
GTCACCACCCCTTGGCACGTCACAACCCTTCGTAGGCTCAAAATCAGATT
CCATACAATAGATCATAGAGGATTATTGTATGTACATGCATAGACGGCAT
CGACGCAAGTCCTCGTTTTTTGAGTGTCTCCCCCCCCCCCTCCCACACAC
ACACTGATATCTACAGACGAGTGGTGTGGCTCAGCAGCGAAGACCAGTCG
AAGGCATTCGACTTCGACGTGGCGTATATCTGTCTTCACGCCATATCCAA
GGACCCCGGAACATTCCCGAACCCGTGTATCTACTGTCAGGTGAAATACT
GCATTTTGACGTATGCATAAGTAGCGCACTTTTCACTGTCGCGCAACGAG
GAGTTTGGTTTGTTTTGGTTCATCTTGCATCACCTCATGTTTTCACGAAC
CCGTTAGGTGTCCCGCATCGTTTTCGTTCGATTCACGGCAATCTTGCCTG
CTGTCTCCGCGGTGTGTGCCCCGATATTAAACAAAAATAAATAAATGATC
ATAGCTGGCGGTGGAAGAAGAAGACGTTCTGAAAGAGGCGTTTTTTGCTC
CAAGCGACGGGGAAGCGGCGACCCTCCAGGCGCTTTTCGAGGCTTTCTCC
AAGGCCGCGGAATTGAATCCAGAGCCAGGGGACGAGGGGGCAGGGGCGGG
CGAGGAGGAGGGGCTGGGGGGAGGGGCGGGGGGGCTGGTCTTCGACCACG
GCAGGTACGTGTGCGTACCTGCCGCTTTTCTGAGAAGACTCTCATTGGGT
ACACGAAGCATGTGGTGGATGACGACCCAATCGAGACTGAGGAGTTGGGG
AAGAGCTGCGGGGGCGACGGGGAGTGTGTGTGTGTGTGTTGGGAACGGGC
TTGATAGTCTAGCGCAATGCCATCCCCTGGGTACCGCAATGTTTTTGGTT
TACACTGGTGGACGAATTGATCATTTTCTGTACAATTCATTTTGGTTTCG
AAGAAAGTGCTTGCCGCCACTGCTCCGTTGGCGGGGTAATGGACTGAACT
TAGTAGGCGGGGGCACCAGTCCTGACCCTACCCTACCCCCCCCCCCCCCT
TGCGTTGGACCCATCAGTGCACTAAGTGCGGAGCAGGAGAGAGTGCTAGC
GCATCTGGACTCTGTTCTGGTCGTGCCGGAGGGAATGGAGGCTGTAAATG
GTAAGGGTCGAGCTTTGTTGTTGTGGACGTTACTGTCTCGTTGTTGTCGT
TGTTGTTGATGGTGTTGCTGTCGTTGTTCTTGTTGGCGTCGTCTTCGCTT
GAGAAAACCTGTTCGGACGTCTAGTGCACCCAGTACCTTTTTTCACAACA
TCGGCTACTCGATCTTCAAGAGAAGCATAACGAAATACCGCACGCATATG
CCCTGATGCATAGCGGGAAAAGGAGCCATCAATAAGTCCTTACCGTGCCT
GCCTAAGAACAATAAAATTGACCATCCTCCTTGAACGAATCCTCGGAACG
AATTGGGTCATAACTGCTCTTGGCGAAGCAGGTCAGTTCGACGATGCAGA
CGTGCCGCCGGAAGACGGGGAGGGCGACCTTGCAAACGGGCACGGCGCAG
GCGCGAACGGGCACGCCCCAAGTTCATGAAGCGTTACCTGAAAACAGTAC
TGTAGCCATCGTCCGCGCTGTTGTCTGGACGTATGCACGTATTTGGATCG
CTGGAAGCACGTATCTGGCTTGCCCCAGCAGCAGAGCAGCTGCAGAGGAA
GGATGAAGCAAGAGGTGGCTACTGCGTAGCGCTCTGAGGCATGTACGCAT
CTGGTTCTCTGGACGTACGTATCTCGTGCTCTTGACGTAACGCATTTGAT
CTAGGCGTACGTATGTGGCTTGCGCCCCAGCAGCAGAGCAGCTGTAGAGG
AAGGGC
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Coding sequence (CDS) from alignment at chr_00:11784038..11788093-

>Ec-00_007320.1 ID=Ec-00_007320.1|Name=Ec-00_007320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=681bp|location=Sequence derived from alignment at chr_00:11784038..11788093- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCTCTCCTCCAGCGCCCATGATGCGTCAATACTGTGAACGTAATGA
GCTTGGAACAGGGCCTGTCTTGGATGAAGACGAGGGAGAGGAGGTACTCT
TGCGCAACGAGGAAGTGACGCTAGCTTTCTCGCCGGAAAGCCCCGAGGGC
CTGGGCAGCCTCACCGTCACCACCACACGAGTGGTGTGGCTCAGCAGCGA
AGACCAGTCGAAGGCATTCGACTTCGACGTGGCGTATATCTGTCTTCACG
CCATATCCAAGGACCCCGGAACATTCCCGAACCCGTGTATCTACTGTCAG
CTGGCGGTGGAAGAAGAAGACGTTCTGAAAGAGGCGTTTTTTGCTCCAAG
CGACGGGGAAGCGGCGACCCTCCAGGCGCTTTTCGAGGCTTTCTCCAAGG
CCGCGGAATTGAATCCAGAGCCAGGGGACGAGGGGGCAGGGGCGGGCGAG
GAGGAGGGGCTGGGGGGAGGGGCGGGGGGGCTGGTCTTCGACCACGGCAG
TGCACTAAGTGCGGAGCAGGAGAGAGTGCTAGCGCATCTGGACTCTGTTC
TGGTCGTGCCGGAGGGAATGGAGGCTGTAAATGGTCAGTTCGACGATGCA
GACGTGCCGCCGGAAGACGGGGAGGGCGACCTTGCAAACGGGCACGGCGC
AGGCGCGAACGGGCACGCCCCAAGTTCATGA
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Synonyms
The feature 'Ec-00_007320.1' has the following synonyms
Synonym
Esi0552_0010
Esi_0552_0010