Ec-00_007220.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_007220.1
Unique Name	Ec-00_007220.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	561

Homology

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BLAST of Ec-00_007220.1 vs. uniprot
Match: D7G440_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G440_ECTSI)

HSP 1 Score: 905 bits (2339), Expect = 0.000e+0
Identity = 560/560 (100.00%), Postives = 560/560 (100.00%), Query Frame = 1

Query:    1 MTRGYGGGHGGGCCGRDGGHDEPSLHQEGGSGDAERSDGDAGTASCWQGRPFKPPKNCCEGYLEERQRHPRLLCALARVRSQQQPPQRGDVRRQQRVRQLXXXXXXXXXXXXXXXXXXXXGKGERPRKQWAQPQLGQQRRGXXXXXXXXXXXXXXXSALSSSSTGSQHGSGSSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPPVSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRDGGXXXXXDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1680
            MTRGYGGGHGGGCCGRDGGHDEPSLHQEGGSGDAERSDGDAGTASCWQGRPFKPPKNCCEGYLEERQRHPRLLCALARVRSQQQPPQRGDVRRQQRVRQLXXXXXXXXXXXXXXXXXXXXGKGERPRKQWAQPQLGQQRRGXXXXXXXXXXXXXXXSALSSSSTGSQHGSGSSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPPVSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRDGGXXXXXDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW
Sbjct:    1 MTRGYGGGHGGGCCGRDGGHDEPSLHQEGGSGDAERSDGDAGTASCWQGRPFKPPKNCCEGYLEERQRHPRLLCALARVRSQQQPPQRGDVRRQQRVRQLXXXXXXXXXXXXXXXXXXXXGKGERPRKQWAQPQLGQQRRGXXXXXXXXXXXXXXXSALSSSSTGSQHGSGSSRHGSESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPPVSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRDGGXXXXXDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 560

[Close]

BLAST of Ec-00_007220.1 vs. uniprot
Match: D7FSU7_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSU7_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 2.630e-139
Identity = 274/387 (70.80%), Postives = 277/387 (71.58%), Query Frame = 1

Query:  529 SESAPPPIPENGELVGALDGSGGSGSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPP---VSKPRDPRTTAEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGXXXXXXXXXXXXXXXXXXXXXXXVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRDGGXXXXXDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGPAERAFAAAFGXXXXXXXXXAVCSTPRVTSHPKLSFGTPVTERVVSTSTSASIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1680
            SESAPPPIPENGELVG LD SGGSGSSSPAGLLGEIGKQFSLALN SF  EGSDTGEAS PP     V+KPRD   TAEKGL+DTSSHSEKTG                                                                             DMDQGRDGGXXXX DEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGG DESMGPAERAFAAAFG         AVCSTPRVTSHPKLSFGTPVTERVVSTSTSAS+YGTPSRVTPS       LRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEA MANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW
Sbjct:  700 SESAPPPIPENGELVGTLDSSGGSGSSSPAGLLGEIGKQFSLALNGSFGHEGSDTGEASMPPXXXXXVAKPRDAGATAEKGLQDTSSHSEKTG-----------------------------------------------------------------------------DMDQGRDGGXXXXEDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGRDESMGPAERAFAAAFGGGG------AVCSTPRVTSHPKLSFGTPVTERVVSTSTSASVYGTPSRVTPSXXXXXXXLRGFAADTAGPSAGSTAGGSGHGSAGPVRKSSFAIEGVVAVDKVAGYEAAMANWPAGKVEGNPAWEEWSSAKKLVCHLVTAGCLAVIVLTW 1003

The following BLAST results are available for this feature:

BLAST of Ec-00_007220.1 vs. uniprot

BLAST of Ec-00_007220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G440_ECTSI	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FSU7_ECTSI	2.630e-139	70.80	FYVE-type domain-containing protein n=2 Tax=Ectoca...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:11460546..11464996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	461.1
Seed ortholog evalue	7.6e-127
Seed eggNOG ortholog	2880.D7FSU7
Length	3249
KEGG ko	ko:K12492
KEGG Pathway	ko04144,map04144
Hectar predicted targeting category	other localisation
Gene id	Ec-00_007220.1
EggNOG free text desc.	lipid binding
EggNOG OGs	KOG1729@1,KOG1729@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_007220	Ec-00_007220	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 11460546..11464996 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007220.1.1	Ec-00_007220.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 11460546..11460639 +
Ec-00_007220.1.2	Ec-00_007220.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 11461842..11464996 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007220.1	CDS:Ec-00_007220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 11460546..11460639 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007220	3UTR:Ec-00_007220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 11463431..11464996 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007220.1	Ec-00_007220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 11460546..11463430 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:11460546..11464996+
coding sequence from alignment at chr_00:11460546..11464996+

mRNA sequence

>Ec-00_007220.1 ID=Ec-00_007220.1|Name=Ec-00_007220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=561bp
MTRGYGGGHGGGCCGRDGGHDEPSLHQEGGSGDAERSDGDAGTASCWQGR
PFKPPKNCCEGYLEERQRHPRLLCALARVRSQQQPPQRGDVRRQQRVRQL
QRGRQRQRARQRTRQRTRRRGKGERPRKQWAQPQLGQQRRGRGGSGSGHG
TACRCLSALSSSSTGSQHGSGSSRHGSESAPPPIPENGELVGALDGSGGS
GSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPPVSKPRDPRTT
AEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGHGSGWGGS
VSGAGGSAQGSAHGSVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRD
GGGGGGEDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGP
AERAFAAAFGGGGGGSGGGAVCSTPRVTSHPKLSFGTPVTERVVSTSTSA
SIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKS
SFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTA
GCLAVIVLTW*

spliced messenger RNA

>Ec-00_007220.1 ID=Ec-00_007220.1|Name=Ec-00_007220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3249bp|location=Sequence derived from alignment at chr_00:11460546..11464996+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCGGCTACGGCGGCGGCCACGGCGGCGGCTGCTGCGGGCGCGA
CGGCGGGCATGATGAGCCCTCGCTCCACCAAGAAGGCGGATCAGGCGACG
CCGAGCGAAGCGACGGCGATGCAGGAACGGCAAGCTGCTGGCAAGGAAGG
CCCTTTAAACCTCCGAAAAATTGTTGCGAAGGCTATCTTGAGGAACGCCA
GCGGCACCCTCGACTCCTCTGTGCACTCGCTCGCGTCCGCAGCCAACAAC
AGCCGCCACAACGCGGGGACGTACGGCGACAGCAGCGGGTACGGCAGCTG
CAGCGGGGACGGCAACGGCAGCGGGCACGGCAGCGGACACGGCAGCGGAC
ACGGCGTCGTGGGAAAGGGGAGCGGCCACGGAAGCAGTGGGCACAGCCTC
AGCTGGGACAGCAACGGCGCGGGCGGGGGGGCAGCGGCAGCGGTCACGGA
ACCGCGTGTCGGTGCCTGTCTGCCCTGTCCTCGTCCAGCACCGGTAGCCA
GCACGGTTCCGGTAGCAGCCGTCATGGGTCGGAGTCGGCGCCGCCGCCTA
TTCCCGAGAACGGGGAGCTTGTCGGCGCCCTGGATGGTTCCGGGGGGAGT
GGCAGCAGCAGCCCCGCGGGACTGCTCGGCGAAATCGGGAAGCAGTTCAG
CCTTGCTCTCAACCGGTCTTTCAACCTCGAGGGGAGCGATACCGGGGAGG
CTTCGAAGCCGCCGCCGCCGGTGTCAAAGCCGAGAGATCCGAGGACGACG
GCGGAGAAAGGCCTTGAGGACACTTCGTCTCATTCGGAGAAGACCGGGGT
GGGTCGAATGGCAGAGGGGTTGTTGAAGCAGGTCGACCGAGCGGTGCCCA
GCATATCTGTTGGGGACGGCAGCGGCCACGGATCGGGGTGGGGTGGGAGC
GTCAGCGGCGCAGGCGGAAGCGCCCAAGGGAGCGCGCACGGTAGCGTTGC
GAGCGTCGGGGCGTTGGGCAGCGGCGTCGGTGGCGGCTCGCGGAGACCAA
GTGGACTCGTTTTGCCCTGGTCTCAGCAGGACATGGATCAGGGGCGAGAT
GGCGGTGGTGGCGGCGGGGAAGACGAAGCTACCAATCTCGACGCCGACGC
GAGTGGCGACAACCGCTTTGGGCGTGCCTTCACCGGTGCCGGTGCCGGCG
GTGGCACGCCGCACTTGAACGACGGCGGGCACGACGAATCGATGGGGCCG
GCAGAACGCGCGTTTGCGGCCGCCTTCGGCGGCGGCGGCGGCGGCAGCGG
CGGCGGTGCCGTCTGCAGCACTCCTCGCGTGACCTCGCACCCGAAGCTGT
CGTTCGGCACGCCCGTGACGGAACGCGTTGTCTCCACGTCGACCAGCGCT
TCCATCTACGGCACGCCGAGTCGGGTCACGCCGAGCGCGTCCGTCTTCGG
CACGACTCTCAGGGGTTTCGCCGCGGACACTGCCGGGCCCAGCGCCGGCA
GTACCGCCGGCGGTAGCGGGCATGGCTCCGCAGGCCCCGTCCGCAAGAGC
TCGTTCGCGATCGAGGGTGTGGTGGCGGTGGACAAGGTGGCGGGGTACGA
GGCGGGGATGGCGAACTGGCCGGCGGGGAAGGTGGAGGGGAACCCCGCGT
GGGAGGAGTGGAGCTCGGCGAAGAAGCTGGTGTGCCACCTTGTCACCGCG
GGCTGTTTAGCCGTGATCGTGCTTACGTGGTGATGGTTGTGCGCCGTGGT
TGTGGAGGGGAGAACCTCTATTTTTTCGTTTTGGCGATCTCGCTTGTGGC
TGAAGTTATCGGGCCAGCGCCCCACGTGCTGAGAGATGGCAAGAGGCGCT
GTGGTGGTTTTAATTGTTCGGTTTTGACAATCGGTGCTGGCAAGGGGAAC
GACCCACCCCATGAATGATTTTCTTTGTGTTTGCTATTTGATGTACGTGG
AAAGAGAATGCCTTGACTTTTAAAGAAAAACACACTACTGTCAGCGCATG
TTAGTTATCTGTTACACAGTCCTTGGTATTTATAGTTGGTTCGGCCGGCG
TGCTCACCGGAAATTCATATCTACAGCAGTAGGTTGGTGCAACAAGCAAT
GTGGAAGATTGTTCGTTTACGTGTTTGCCCGGCGATAGCAGCCACCGGCC
GAAGTAGGCCCTGAGGAATTGGATGTTTCCGGAGGCCGTAGGATTCGTAC
TCGAGGTCTGTTAGGTTTCTTGTATGTCGTCGACCTATTTAGTTGTCGTG
GGAGGCAGCCTACCGGCAGCTTTCCCCGTGCTCGACGTGTTCACGTGTTC
TGCCCTCTGATGTGTGAGTGTTGGTCGTGTTCGCCTTGCATGGCGATTAT
TCGCGCCGTGGAAACACGGCACAGCAACAAACAGGGCATAAGCAATCAGA
GATAAGCAAGCAGAACATAAGCAAGCAGAGCATAAGTATACCGCAACAAA
ACATGGCAGCGTCCTTGGCTTCTATCTAATCGTTTTATGCATAGAAAAAT
GACTTCCGTTGTTGGGCACGTGTTTCGTTGAATGTTGGGGAGGTATATTC
ACTCAGGGGTGCGCCGACCAGAGTATTTGCCTCCCGATTTGTTCCCTGCG
TGTTTTTGGCGAAAGTCATTCAATTTTTGGGAAGCTGCCAACAGACGGGT
GGGGCATGTGTGTTGTTAGACGGGATGGGCGAAGGCTTGGGGCCGGTGTT
GTTGTCATCAGACAAGTACCGTAGGTTGAGTAAGATATCACATCCCCTGG
GAACGATTTTCGAAGCTCGGTACCTCGGCAGGAGAATCAGTGACGGTGCC
GACAATGGCGGCATTGGAACCGTCTCGTCGAGAGCTTTCCGATAACAAAC
GTATACTGCAATTTCAGCATCCTCTTCGTCGTGGGGTAATCGAGCTTTGA
AAATCGGTCCACGCGGTGTGGCATCTGAGGCAACCTAGGGTACCTTGCTG
CGTCGATCGTGTGTGACGATTTTTCTCTGTGTTTTTGGGGGGGGTGTCGG
TTAGCGTGGGCGTCCGGCGGCTTTGGAAAACTCCACGCAGAACATGGAAC
ACCACAGAGTGGGACATTTTTTCGGGGGGAGCCAGATCGTGGCATGGGTG
GTTGTGGCTGCTTTGGTGCTTCATCTTTTGCTTGCTTGTCGTCGTTTGTG
GTCGTCGCCCGCATCCATCCACCTTTCTACGGTCCCCGCGGTGACCTTGC
GGAGAGAAACATGAGATCGACAGATGTAAGCGTGTTCGTTTAAGGGGAGA
TTTCATACGAAAGAACCTGATTTTTGCGAAATGGATTTTTCTTCCAGGT

protein sequence of Ec-00_007220.1

>Ec-00_007220.1 ID=Ec-00_007220.1|Name=Ec-00_007220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=561bp
MTRGYGGGHGGGCCGRDGGHDEPSLHQEGGSGDAERSDGDAGTASCWQGR
PFKPPKNCCEGYLEERQRHPRLLCALARVRSQQQPPQRGDVRRQQRVRQL
QRGRQRQRARQRTRQRTRRRGKGERPRKQWAQPQLGQQRRGRGGSGSGHG
TACRCLSALSSSSTGSQHGSGSSRHGSESAPPPIPENGELVGALDGSGGS
GSSSPAGLLGEIGKQFSLALNRSFNLEGSDTGEASKPPPPVSKPRDPRTT
AEKGLEDTSSHSEKTGVGRMAEGLLKQVDRAVPSISVGDGSGHGSGWGGS
VSGAGGSAQGSAHGSVASVGALGSGVGGGSRRPSGLVLPWSQQDMDQGRD
GGGGGGEDEATNLDADASGDNRFGRAFTGAGAGGGTPHLNDGGHDESMGP
AERAFAAAFGGGGGGSGGGAVCSTPRVTSHPKLSFGTPVTERVVSTSTSA
SIYGTPSRVTPSASVFGTTLRGFAADTAGPSAGSTAGGSGHGSAGPVRKS
SFAIEGVVAVDKVAGYEAGMANWPAGKVEGNPAWEEWSSAKKLVCHLVTA
GCLAVIVLTW*

mRNA from alignment at chr_00:11460546..11464996+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_007220.1 ID=Ec-00_007220.1|Name=Ec-00_007220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4451bp|location=Sequence derived from alignment at chr_00:11460546..11464996+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACACGCGGCTACGGCGGCGGCCACGGCGGCGGCTGCTGCGGGCGCGA
CGGCGGGCATGATGAGCCCTCGCTCCACCAAGAAGGCGGATCAGGTACGC
AGGGGATTTGTGTACCCCCCCACTTTTTGGTGGTCAAGTAGGTTATGTTG
TGCGGGGTCGAGAACCCTCACTCCGCGCAAAGGGGATGATCGCACCACGT
TGTGTGAAAATGGTCAAGCAACCTCGAGGCAGTTCCACAGTGCTAACAAC
TGTTCTCTGGAAGTAAAAGCACCAGATATTAAATCACGTCATTCGCAGCT
GTCATCCGTATGCAAGGACGTAAGCACAAGATGCCGAACACCCTTAGCAG
GATGCAGCGCACCCTCCATTCGATCCGTCGAGTACCTCGGCGCTTCGCGC
TTGGTGATGTGAGAGTCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCTG
GCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACCAGGGCATGCACGAC
TAGGAGTGCGCCCCGCCCACCCCGCCCTATTTTGTTGTGTTGTTTGCACA
ACCGGCCGACATCTTGGGTTGTACGCAAACAAAAGAACGAAAATGGCGGG
GCCTCTTCCATTGTTGTTTTTGTGTGGCGGCACCCCCACCGCGTTTCAGA
ACTCTGGTTGTTTCATTGACTCCGACAGAATACCTCGCTGTGGGGCACAA
ATAGCGAGTAAGGAGCAGCCGTTTCTCCGCCCCGCCTTTCTGCTCGTGTG
TCGGCCGGTGTGGGGGTCGTACGCGTGTGAATCACTGCTGAGCCACATAC
GACGTCGAGTTTGCGTCTTTTGTCGTGGGATATACTCCGATTCAGGGATG
CGACCGACCATACGGGGCGACTGCCAAGACATTGGTCGAGATTCGCCCCC
GTAGGGTGGATAAGTCTTGACGTCATGTAGTCCGCGCCTTTTCAAGAATC
CCGGTCGTATGAATGTGGTAGCTTTGGTTATGACGCGCGGGTCCTTGAGC
CCGCTCGATACGGTGACGATGCCGGGTTTACGCCATGCCTCACAGATGGA
AGCCACATGGCAGTCTTCACTCGTGACGTTGATATGCTTGCGCGCCTACA
GCGCACGCGCTATTCTCTGCCATCGCTACAGTACGCGTGGAGCGATGCGC
TCGGCGCTTGGTATCGACGGACCTGATCCGTGGTCATGCATGGGCTGTGG
GAACACGCGGATATCGCACATGAGAGGCCACCAGAACAACATTTACACAC
ACCCTCATCTGGCACACAACGCCCCTCGCAAACCGTGTTGACGCAGGCGA
CGCCGAGCGAAGCGACGGCGATGCAGGAACGGCAAGCTGCTGGCAAGGAA
GGCCCTTTAAACCTCCGAAAAATTGTTGCGAAGGCTATCTTGAGGAACGC
CAGCGGCACCCTCGACTCCTCTGTGCACTCGCTCGCGTCCGCAGCCAACA
ACAGCCGCCACAACGCGGGGACGTACGGCGACAGCAGCGGGTACGGCAGC
TGCAGCGGGGACGGCAACGGCAGCGGGCACGGCAGCGGACACGGCAGCGG
ACACGGCGTCGTGGGAAAGGGGAGCGGCCACGGAAGCAGTGGGCACAGCC
TCAGCTGGGACAGCAACGGCGCGGGCGGGGGGGCAGCGGCAGCGGTCACG
GAACCGCGTGTCGGTGCCTGTCTGCCCTGTCCTCGTCCAGCACCGGTAGC
CAGCACGGTTCCGGTAGCAGCCGTCATGGGTCGGAGTCGGCGCCGCCGCC
TATTCCCGAGAACGGGGAGCTTGTCGGCGCCCTGGATGGTTCCGGGGGGA
GTGGCAGCAGCAGCCCCGCGGGACTGCTCGGCGAAATCGGGAAGCAGTTC
AGCCTTGCTCTCAACCGGTCTTTCAACCTCGAGGGGAGCGATACCGGGGA
GGCTTCGAAGCCGCCGCCGCCGGTGTCAAAGCCGAGAGATCCGAGGACGA
CGGCGGAGAAAGGCCTTGAGGACACTTCGTCTCATTCGGAGAAGACCGGG
GTGGGTCGAATGGCAGAGGGGTTGTTGAAGCAGGTCGACCGAGCGGTGCC
CAGCATATCTGTTGGGGACGGCAGCGGCCACGGATCGGGGTGGGGTGGGA
GCGTCAGCGGCGCAGGCGGAAGCGCCCAAGGGAGCGCGCACGGTAGCGTT
GCGAGCGTCGGGGCGTTGGGCAGCGGCGTCGGTGGCGGCTCGCGGAGACC
AAGTGGACTCGTTTTGCCCTGGTCTCAGCAGGACATGGATCAGGGGCGAG
ATGGCGGTGGTGGCGGCGGGGAAGACGAAGCTACCAATCTCGACGCCGAC
GCGAGTGGCGACAACCGCTTTGGGCGTGCCTTCACCGGTGCCGGTGCCGG
CGGTGGCACGCCGCACTTGAACGACGGCGGGCACGACGAATCGATGGGGC
CGGCAGAACGCGCGTTTGCGGCCGCCTTCGGCGGCGGCGGCGGCGGCAGC
GGCGGCGGTGCCGTCTGCAGCACTCCTCGCGTGACCTCGCACCCGAAGCT
GTCGTTCGGCACGCCCGTGACGGAACGCGTTGTCTCCACGTCGACCAGCG
CTTCCATCTACGGCACGCCGAGTCGGGTCACGCCGAGCGCGTCCGTCTTC
GGCACGACTCTCAGGGGTTTCGCCGCGGACACTGCCGGGCCCAGCGCCGG
CAGTACCGCCGGCGGTAGCGGGCATGGCTCCGCAGGCCCCGTCCGCAAGA
GCTCGTTCGCGATCGAGGGTGTGGTGGCGGTGGACAAGGTGGCGGGGTAC
GAGGCGGGGATGGCGAACTGGCCGGCGGGGAAGGTGGAGGGGAACCCCGC
GTGGGAGGAGTGGAGCTCGGCGAAGAAGCTGGTGTGCCACCTTGTCACCG
CGGGCTGTTTAGCCGTGATCGTGCTTACGTGGTGATGGTTGTGCGCCGTG
GTTGTGGAGGGGAGAACCTCTATTTTTTCGTTTTGGCGATCTCGCTTGTG
GCTGAAGTTATCGGGCCAGCGCCCCACGTGCTGAGAGATGGCAAGAGGCG
CTGTGGTGGTTTTAATTGTTCGGTTTTGACAATCGGTGCTGGCAAGGGGA
ACGACCCACCCCATGAATGATTTTCTTTGTGTTTGCTATTTGATGTACGT
GGAAAGAGAATGCCTTGACTTTTAAAGAAAAACACACTACTGTCAGCGCA
TGTTAGTTATCTGTTACACAGTCCTTGGTATTTATAGTTGGTTCGGCCGG
CGTGCTCACCGGAAATTCATATCTACAGCAGTAGGTTGGTGCAACAAGCA
ATGTGGAAGATTGTTCGTTTACGTGTTTGCCCGGCGATAGCAGCCACCGG
CCGAAGTAGGCCCTGAGGAATTGGATGTTTCCGGAGGCCGTAGGATTCGT
ACTCGAGGTCTGTTAGGTTTCTTGTATGTCGTCGACCTATTTAGTTGTCG
TGGGAGGCAGCCTACCGGCAGCTTTCCCCGTGCTCGACGTGTTCACGTGT
TCTGCCCTCTGATGTGTGAGTGTTGGTCGTGTTCGCCTTGCATGGCGATT
ATTCGCGCCGTGGAAACACGGCACAGCAACAAACAGGGCATAAGCAATCA
GAGATAAGCAAGCAGAACATAAGCAAGCAGAGCATAAGTATACCGCAACA
AAACATGGCAGCGTCCTTGGCTTCTATCTAATCGTTTTATGCATAGAAAA
ATGACTTCCGTTGTTGGGCACGTGTTTCGTTGAATGTTGGGGAGGTATAT
TCACTCAGGGGTGCGCCGACCAGAGTATTTGCCTCCCGATTTGTTCCCTG
CGTGTTTTTGGCGAAAGTCATTCAATTTTTGGGAAGCTGCCAACAGACGG
GTGGGGCATGTGTGTTGTTAGACGGGATGGGCGAAGGCTTGGGGCCGGTG
TTGTTGTCATCAGACAAGTACCGTAGGTTGAGTAAGATATCACATCCCCT
GGGAACGATTTTCGAAGCTCGGTACCTCGGCAGGAGAATCAGTGACGGTG
CCGACAATGGCGGCATTGGAACCGTCTCGTCGAGAGCTTTCCGATAACAA
ACGTATACTGCAATTTCAGCATCCTCTTCGTCGTGGGGTAATCGAGCTTT
GAAAATCGGTCCACGCGGTGTGGCATCTGAGGCAACCTAGGGTACCTTGC
TGCGTCGATCGTGTGTGACGATTTTTCTCTGTGTTTTTGGGGGGGGTGTC
GGTTAGCGTGGGCGTCCGGCGGCTTTGGAAAACTCCACGCAGAACATGGA
ACACCACAGAGTGGGACATTTTTTCGGGGGGAGCCAGATCGTGGCATGGG
TGGTTGTGGCTGCTTTGGTGCTTCATCTTTTGCTTGCTTGTCGTCGTTTG
TGGTCGTCGCCCGCATCCATCCACCTTTCTACGGTCCCCGCGGTGACCTT
GCGGAGAGAAACATGAGATCGACAGATGTAAGCGTGTTCGTTTAAGGGGA
GATTTCATACGAAAGAACCTGATTTTTGCGAAATGGATTTTTCTTCCAGG
T

Coding sequence (CDS) from alignment at chr_00:11460546..11464996+

>Ec-00_007220.1 ID=Ec-00_007220.1|Name=Ec-00_007220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1683bp|location=Sequence derived from alignment at chr_00:11460546..11464996+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACACGCGGCTACGGCGGCGGCCACGGCGGCGGCTGCTGCGGGCGCGA
CGGCGGGCATGATGAGCCCTCGCTCCACCAAGAAGGCGGATCAGGCGACG
CCGAGCGAAGCGACGGCGATGCAGGAACGGCAAGCTGCTGGCAAGGAAGG
CCCTTTAAACCTCCGAAAAATTGTTGCGAAGGCTATCTTGAGGAACGCCA
GCGGCACCCTCGACTCCTCTGTGCACTCGCTCGCGTCCGCAGCCAACAAC
AGCCGCCACAACGCGGGGACGTACGGCGACAGCAGCGGGTACGGCAGCTG
CAGCGGGGACGGCAACGGCAGCGGGCACGGCAGCGGACACGGCAGCGGAC
ACGGCGTCGTGGGAAAGGGGAGCGGCCACGGAAGCAGTGGGCACAGCCTC
AGCTGGGACAGCAACGGCGCGGGCGGGGGGGCAGCGGCAGCGGTCACGGA
ACCGCGTGTCGGTGCCTGTCTGCCCTGTCCTCGTCCAGCACCGGTAGCCA
GCACGGTTCCGGTAGCAGCCGTCATGGGTCGGAGTCGGCGCCGCCGCCTA
TTCCCGAGAACGGGGAGCTTGTCGGCGCCCTGGATGGTTCCGGGGGGAGT
GGCAGCAGCAGCCCCGCGGGACTGCTCGGCGAAATCGGGAAGCAGTTCAG
CCTTGCTCTCAACCGGTCTTTCAACCTCGAGGGGAGCGATACCGGGGAGG
CTTCGAAGCCGCCGCCGCCGGTGTCAAAGCCGAGAGATCCGAGGACGACG
GCGGAGAAAGGCCTTGAGGACACTTCGTCTCATTCGGAGAAGACCGGGGT
GGGTCGAATGGCAGAGGGGTTGTTGAAGCAGGTCGACCGAGCGGTGCCCA
GCATATCTGTTGGGGACGGCAGCGGCCACGGATCGGGGTGGGGTGGGAGC
GTCAGCGGCGCAGGCGGAAGCGCCCAAGGGAGCGCGCACGGTAGCGTTGC
GAGCGTCGGGGCGTTGGGCAGCGGCGTCGGTGGCGGCTCGCGGAGACCAA
GTGGACTCGTTTTGCCCTGGTCTCAGCAGGACATGGATCAGGGGCGAGAT
GGCGGTGGTGGCGGCGGGGAAGACGAAGCTACCAATCTCGACGCCGACGC
GAGTGGCGACAACCGCTTTGGGCGTGCCTTCACCGGTGCCGGTGCCGGCG
GTGGCACGCCGCACTTGAACGACGGCGGGCACGACGAATCGATGGGGCCG
GCAGAACGCGCGTTTGCGGCCGCCTTCGGCGGCGGCGGCGGCGGCAGCGG
CGGCGGTGCCGTCTGCAGCACTCCTCGCGTGACCTCGCACCCGAAGCTGT
CGTTCGGCACGCCCGTGACGGAACGCGTTGTCTCCACGTCGACCAGCGCT
TCCATCTACGGCACGCCGAGTCGGGTCACGCCGAGCGCGTCCGTCTTCGG
CACGACTCTCAGGGGTTTCGCCGCGGACACTGCCGGGCCCAGCGCCGGCA
GTACCGCCGGCGGTAGCGGGCATGGCTCCGCAGGCCCCGTCCGCAAGAGC
TCGTTCGCGATCGAGGGTGTGGTGGCGGTGGACAAGGTGGCGGGGTACGA
GGCGGGGATGGCGAACTGGCCGGCGGGGAAGGTGGAGGGGAACCCCGCGT
GGGAGGAGTGGAGCTCGGCGAAGAAGCTGGTGTGCCACCTTGTCACCGCG
GGCTGTTTAGCCGTGATCGTGCTTACGTGGTGA

Synonyms

The feature 'Ec-00_007220.1' has the following synonyms


Synonym
Esi0543_0004
Esi_0543_0004