Ec-00_005730.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005730.1
Unique NameEc-00_005730.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length39
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_005730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:9110747..9111421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length117
Hectar predicted targeting categorysignal peptide
Gene idEc-00_005730.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005730Ec-00_005730Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 9110747..9111421 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005730.1.3Ec-00_005730.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9110747..9110761 -
Ec-00_005730.1.2Ec-00_005730.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9111077..9111140 -
Ec-00_005730.1.1Ec-00_005730.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9111384..9111421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005730.1CDS:Ec-00_005730.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 9110747..9110761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005730.1Ec-00_005730.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 9110747..9111421 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005730.1 ID=Ec-00_005730.1|Name=Ec-00_005730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=39bp
MMGAIAAPATAWMGTSTNAAAMATIAKMSIRHVTLAKP*
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spliced messenger RNA

>Ec-00_005730.1 ID=Ec-00_005730.1|Name=Ec-00_005730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=117bp|location=Sequence derived from alignment at chr_00:9110747..9111421- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGGGCGATTGCTGCTCCTGCGACTGCGTGGATGGGGACGTCCAC
GAATGCGGCAGCAATGGCTACGATTGCCAAGATGTCGATTCGGCATGTTA
CGTTGGCGAAGCCCTGA
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protein sequence of Ec-00_005730.1

>Ec-00_005730.1 ID=Ec-00_005730.1|Name=Ec-00_005730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=39bp
MMGAIAAPATAWMGTSTNAAAMATIAKMSIRHVTLAKP*
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mRNA from alignment at chr_00:9110747..9111421-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005730.1 ID=Ec-00_005730.1|Name=Ec-00_005730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=675bp|location=Sequence derived from alignment at chr_00:9110747..9111421- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGGGGCGATTGCTGCTCCTGCGACTGCGTGGATGTGAGGACGATC
GCTGGGGTTGATTTTGTTCGTGGAAGTTGCCTACCTACCGTTTGTTGAGC
TTTAGGTTGGTGGATTGGTGGATGTCCATGGTTACGTTTTGCGATGCATC
ACAAGAATTCCCCCAACGTCGTGGCGTACAGTAGAACGTCAATGATCGTA
TCCTCGATGTCAGCAAAGTACGTGTCTCCCCCCGATGATGTTTGTAGCAC
CTTCTCTCGCTTGCCGTTCGGCTATATCCAGGGGGACGTCCACGAATGCG
GCAGCAATGGCTACGATTGCCAAGATGTCGATTCGGCATGTTACGGTGGG
TGGCACTCCGTAGGGGCCTCAACAGTCGACGTAGTTCACACGACAAGTTT
GGTCTTCGCTGTATTCCATTATTGTCATTCGCATACAACGTAAGTTGGTC
CGGCGATTGTCGACCACGCAGTGTCCGTTGGATAGGAACACTGTAGCTGA
TGCCACTCTGTTGAAGCTCACGCTCGCAGTTCAGAGGGAGAAAAGGGATT
GCTTACACGCGTGCACGGCAGCATACTCACCAGTGTGGAGGGAAATCGTT
CATACGATTGACGCTGGCATGATTTGCGTGACATCTGTTGCTGCTCGGTT
GCCGATATAGTTGGCGAAGCCCTGA
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Coding sequence (CDS) from alignment at chr_00:9110747..9111421-

>Ec-00_005730.1 ID=Ec-00_005730.1|Name=Ec-00_005730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=117bp|location=Sequence derived from alignment at chr_00:9110747..9111421- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGGGGCGATTGCTGCTCCTGCGACTGCGTGGATGGGGACGTCCAC
GAATGCGGCAGCAATGGCTACGATTGCCAAGATGTCGATTCGGCATGTTA
CGTTGGCGAAGCCCTGA
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Synonyms
The feature 'Ec-00_005730.1' has the following synonyms
Synonym
Esi468_0022
Esi_468_0022