Ec-00_005690.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005690.1
Unique NameEc-00_005690.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length212
Homology
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BLAST of Ec-00_005690.1 vs. uniprot
Match: D7G1E2_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E2_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 9.660e-155
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 
Query:    1 MCGHNKVVVILVLREVDIEARDGDIFFGSKTALQLSAEGGHLRVVNTLVIRGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFLQCALILAAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGHYDVVNYLLENRVRIETVDGELSTPLSYSVMEKPPACDGYPPESRGRHSKRRQSELNTWDSL 633
            MCGHNKVVVILVLREVDIEARDGDIFFGSKTALQLSAEGGHLRVVNTLVIRGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFLQCALILAAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGHYDVVNYLLENRVRIETVDGELSTPLSYSVMEKPPACDGYPPESRGRHSKRRQSELNTWDSL
Sbjct:    1 MCGHNKVVVILVLREVDIEARDGDIFFGSKTALQLSAEGGHLRVVNTLVIRGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFLQCALILAAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGHYDVVNYLLENRVRIETVDGELSTPLSYSVMEKPPACDGYPPESRGRHSKRRQSELNTWDSL 211
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BLAST of Ec-00_005690.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 5.360e-45
Identity = 93/157 (59.24%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:   85 SKTALQLSAEGGHLRVVNTLVIRGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGK----YELPGGFLQCALILAAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGHYDVVNYLLENRVRIETVDGELSTPLSYSVME 543
            S++AL LSA+GGHLRVVNTLV+RGA    +T G LR  VEEGF  AF+ + +GN +      YE  G FLQ AL+ AAE G+LPVV+ALS KGV+LDGTAE+  P ++      ATALHAAA+GGH DVVN+LLEN VRI+ VDG + TPL  SV E
Sbjct:  125 SESALLLSAKGGHLRVVNTLVLRGASVCCDTVGLLRCGVEEGFHEAFNNVLDGNLQDGLPDGYESRGHFLQTALLKAAESGNLPVVKALSTKGVDLDGTAEY-HPSHSDIIPGQATALHAAAFGGHNDVVNFLLENSVRIDAVDGNMMTPLICSVSE 280
[Close]
BLAST of Ec-00_005690.1 vs. uniprot
Match: Q8QNP0_ESV1K (EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K)

HSP 1 Score: 142 bits (358), Expect = 3.180e-36
Identity = 74/125 (59.20%), Postives = 93/125 (74.40%), Query Frame = 1 
Query:  169 PETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFLQCALILAAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGHYDVVNYLLENRVRIETVDGELSTPLSYSVME 543
            P+T GRLRF  EE FRAAF+ +F+GN E  ++  G FLQ AL+ AAEYG+LPVV+ALS KGV+LDGTAE++ P ++      ATALHAAA GGH DVVNYLL+N VRI+  D  + TPL +S M+
Sbjct:  216 PDTIGRLRFGTEEEFRAAFNKVFDGNIESGHKSHGDFLQSALLYAAEYGNLPVVKALSTKGVDLDGTAEYY-PSHSDIVPGQATALHAAASGGHNDVVNYLLDNSVRIDPDDKNMMTPLMWSAMK 339
The following BLAST results are available for this feature:
BLAST of Ec-00_005690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1E2_ECTSI9.660e-155100.00EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D8LP53_ECTSI5.360e-4559.24EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP0_ESV1K3.180e-3659.20EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8979046..8979681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue3.2e-38
Seed eggNOG ortholog2880.D8LP53
Length636
Hectar predicted targeting categoryother localisation
Gene idEc-00_005690.1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005690Ec-00_005690Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8979046..8979681 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005690.1.1Ec-00_005690.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8979046..8979681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005690.1CDS:Ec-00_005690.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8979046..8979681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005690.1Ec-00_005690.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8979046..8979681 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005690.1 ID=Ec-00_005690.1|Name=Ec-00_005690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=212bp
MCGHNKVVVILVLREVDIEARDGDIFFGSKTALQLSAEGGHLRVVNTLVI
RGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFLQCALIL
AAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGH
YDVVNYLLENRVRIETVDGELSTPLSYSVMEKPPACDGYPPESRGRHSKR
RQSELNTWDSL*
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spliced messenger RNA

>Ec-00_005690.1 ID=Ec-00_005690.1|Name=Ec-00_005690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=636bp|location=Sequence derived from alignment at chr_00:8979046..8979681- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGGGCATAACAAGGTAGTCGTTATTCTCGTGCTGAGGGAAGTGGA
CATCGAGGCTCGTGACGGCGACATTTTCTTCGGGTCGAAAACCGCGCTGC
AACTGTCAGCCGAAGGTGGCCACCTGCGCGTAGTCAACACTCTGGTCATC
AGAGGCGCCCTTGCGGAACCTGAAACTTTCGGACGCCTCCGTTTTAGCGT
GGAGGAAGGATTCCGTGCAGCGTTCGACACTCTCTTTGAAGGGAATCGTG
AGGGAAAGTATGAGCTTCCTGGAGGTTTTCTACAATGCGCCCTGATCTTG
GCAGCAGAATACGGCGATCTCCCTGTCGTCGAGGCCTTGTCCATCAAGGG
TGTCAATCTCGACGGCACGGCAGAATTCTGGGACCCTGGCAATAATGGTT
GGTTTTGTGAACCGGCGACTGCTCTACACGCTGCTGCATACGGAGGCCAC
TACGATGTTGTTAACTATCTCCTGGAGAATAGGGTTCGTATCGAAACAGT
GGATGGAGAGTTATCTACACCCTTGTCTTATTCCGTGATGGAAAAACCAC
CTGCGTGTGACGGCTACCCTCCTGAAAGCCGGGGCCGACACAGCAAAAGA
CGACAATCGGAGCTCAATACTTGGGACAGCCTGTAA
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protein sequence of Ec-00_005690.1

>Ec-00_005690.1 ID=Ec-00_005690.1|Name=Ec-00_005690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=212bp
MCGHNKVVVILVLREVDIEARDGDIFFGSKTALQLSAEGGHLRVVNTLVI
RGALAEPETFGRLRFSVEEGFRAAFDTLFEGNREGKYELPGGFLQCALIL
AAEYGDLPVVEALSIKGVNLDGTAEFWDPGNNGWFCEPATALHAAAYGGH
YDVVNYLLENRVRIETVDGELSTPLSYSVMEKPPACDGYPPESRGRHSKR
RQSELNTWDSL*
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mRNA from alignment at chr_00:8979046..8979681-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005690.1 ID=Ec-00_005690.1|Name=Ec-00_005690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=636bp|location=Sequence derived from alignment at chr_00:8979046..8979681- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGGGCATAACAAGGTAGTCGTTATTCTCGTGCTGAGGGAAGTGGA
CATCGAGGCTCGTGACGGCGACATTTTCTTCGGGTCGAAAACCGCGCTGC
AACTGTCAGCCGAAGGTGGCCACCTGCGCGTAGTCAACACTCTGGTCATC
AGAGGCGCCCTTGCGGAACCTGAAACTTTCGGACGCCTCCGTTTTAGCGT
GGAGGAAGGATTCCGTGCAGCGTTCGACACTCTCTTTGAAGGGAATCGTG
AGGGAAAGTATGAGCTTCCTGGAGGTTTTCTACAATGCGCCCTGATCTTG
GCAGCAGAATACGGCGATCTCCCTGTCGTCGAGGCCTTGTCCATCAAGGG
TGTCAATCTCGACGGCACGGCAGAATTCTGGGACCCTGGCAATAATGGTT
GGTTTTGTGAACCGGCGACTGCTCTACACGCTGCTGCATACGGAGGCCAC
TACGATGTTGTTAACTATCTCCTGGAGAATAGGGTTCGTATCGAAACAGT
GGATGGAGAGTTATCTACACCCTTGTCTTATTCCGTGATGGAAAAACCAC
CTGCGTGTGACGGCTACCCTCCTGAAAGCCGGGGCCGACACAGCAAAAGA
CGACAATCGGAGCTCAATACTTGGGACAGCCTGTAA
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Coding sequence (CDS) from alignment at chr_00:8979046..8979681-

>Ec-00_005690.1 ID=Ec-00_005690.1|Name=Ec-00_005690.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=636bp|location=Sequence derived from alignment at chr_00:8979046..8979681- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGGGCATAACAAGGTAGTCGTTATTCTCGTGCTGAGGGAAGTGGA
CATCGAGGCTCGTGACGGCGACATTTTCTTCGGGTCGAAAACCGCGCTGC
AACTGTCAGCCGAAGGTGGCCACCTGCGCGTAGTCAACACTCTGGTCATC
AGAGGCGCCCTTGCGGAACCTGAAACTTTCGGACGCCTCCGTTTTAGCGT
GGAGGAAGGATTCCGTGCAGCGTTCGACACTCTCTTTGAAGGGAATCGTG
AGGGAAAGTATGAGCTTCCTGGAGGTTTTCTACAATGCGCCCTGATCTTG
GCAGCAGAATACGGCGATCTCCCTGTCGTCGAGGCCTTGTCCATCAAGGG
TGTCAATCTCGACGGCACGGCAGAATTCTGGGACCCTGGCAATAATGGTT
GGTTTTGTGAACCGGCGACTGCTCTACACGCTGCTGCATACGGAGGCCAC
TACGATGTTGTTAACTATCTCCTGGAGAATAGGGTTCGTATCGAAACAGT
GGATGGAGAGTTATCTACACCCTTGTCTTATTCCGTGATGGAAAAACCAC
CTGCGTGTGACGGCTACCCTCCTGAAAGCCGGGGCCGACACAGCAAAAGA
CGACAATCGGAGCTCAATACTTGGGACAGCCTGTAA
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Synonyms
The feature 'Ec-00_005690.1' has the following synonyms
Synonym
Esi0448_0018
Esi_0448_0018