Ec-00_005510.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005510.2
Unique NameEc-00_005510.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length103
Homology
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BLAST of Ec-00_005510.2 vs. uniprot
Match: D7G197_ECTSI (Exostoses (Multiple) 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G197_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.040e-53
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:  226 LQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQ--AIEAYWKIYGGTTNYSWISRITIEILSERLGYHRP 504
            L+ALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQ  AIEAYWKIYGGTTNYSWISRITIEILSERLGYHRP
Sbjct:   19 LKALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQRRAIEAYWKIYGGTTNYSWISRITIEILSERLGYHRP 113
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BLAST of Ec-00_005510.2 vs. uniprot
Match: A0A6H5L9T2_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.990e-25
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEV-PQMIEVLRSLSMAETEEMQ--AIEAYWKIYGGTTNYSWISRITIEILSERLGYH 498
            R PG     + +SAGAIPV VVRDW+KPF E++DW SFSF FSPD+V P M+E LR++  A+  EMQ  ++ AYWKI+GG TNYS I+   I++L +R+GYH
Sbjct:  426 RSPGSFRLGEVMSAGAIPVFVVRDWIKPFQEQIDWPSFSFVFSPDDVGPIMMETLRAVQPAQLLEMQRKSLRAYWKIFGGVTNYSVIASNAIDMLVQRIGYH 527
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BLAST of Ec-00_005510.2 vs. uniprot
Match: A0A6H5JRU9_9PHAE (GT47 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRU9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.170e-16
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEV-PQMIEVLRSLSMAETEEMQ--AIEAYWKIYGGTTNYSWISRITIEILSERLGYHR 501
            R P      + +SAGAIPV V RD V+PFPE+VDW + SF+F P+EV P M++ LRS++ AE   MQ  +++A+++I+G    Y  I+R+ ++ L  R+GYHR
Sbjct:  434 RQPATYRLAEVMSAGAIPVFVSRDMVRPFPERVDWPTLSFSFPPEEVGPAMMDTLRSVTPAELLGMQRKSVQAFYEIFGEEPGYDRIARVVVDELVLRVGYHR 536
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BLAST of Ec-00_005510.2 vs. uniprot
Match: D8LQY4_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.540e-13
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEV-PQMIEVLRSLSMAETEEMQ 399
            R PG     + +SAGAIPV VVRDW+KPF E++DW SFSF FSPD+V P M+E LR++  A   EMQ
Sbjct:  121 RSPGSFRLGEVMSAGAIPVFVVRDWIKPFQEQIDWPSFSFVFSPDDVGPIMMETLRAVEPARLLEMQ 187
[Close]
BLAST of Ec-00_005510.2 vs. uniprot
Match: A0A6H5KJY5_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.290e-12
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQ--AIEAYWKIYG-GTTNYSWISRITIEILSERLGYH 498
            R P      +ALSAGAIPV + +D+VKPFP ++ WS FSF+F P+E P+++E LR++   +  +MQ  A+E +   +G G  N   +    ++IL +RL + 
Sbjct:   12 RSPATYRLAEALSAGAIPVFIHQDFVKPFPGQIPWSEFSFSFPPEEAPRILETLRAVPDKKLAQMQVTALEVFDTYFGPGMGN---MLHTVLDILEDRLHFR 110
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BLAST of Ec-00_005510.2 vs. uniprot
Match: D8LNT2_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.570e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQA--IEAYWKIYG-GTTNYSWISRITIEILSERLGYH 498
            R P      +ALSAGA+PV + +D+VKPFP K+ WS FSF+F P+EVP+M++ LR++   E  +MQA  +E +   +G G  N   +    ++IL +RL + 
Sbjct:  488 RSPATYRLAEALSAGALPVFIHQDFVKPFPGKIPWSDFSFSFPPEEVPRMLKTLRAVPDRELAQMQATALEVFDTYFGPGMDN---MLHTVLDILEDRLYFR 586
[Close]
BLAST of Ec-00_005510.2 vs. uniprot
Match: D7FXN9_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN9_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.360e-10
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIVVRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQ--AIEAYWKIYG-GTTNYSWISRITIEILSERLGYH 498
            R P      +ALSAGA+PV + +D+VKPFP +V WS FSF+F P+E P+++E LR++   +  +MQ  A+E +   +G G  N   +    ++IL +RL + 
Sbjct:  455 RSPATYRLAEALSAGALPVFIHQDFVKPFPGQVPWSEFSFSFPPEEAPRILETLRAVPDKKLAQMQVTALEVFDTYFGPGMGN---MLHTVLDILEDRLHFR 553
[Close]
BLAST of Ec-00_005510.2 vs. uniprot
Match: A0A6H5JXY3_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.490e-6
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:  202 RCPGKNHRLQALSAGAIPVIV-----------------------VRDWVKPFPEKVDWSSFSFTFSPDEVPQMIEVLRSLSMAETEEMQA 402
            R P      +ALSAGA+PV +                        +D+VKPFP K+ WS FSFTF P+EVP+M++ LR++   E   MQA
Sbjct:  394 RSPATYRLAEALSAGALPVFIHQDGYVAEASNKPPTPTASKHCNSQDFVKPFPGKIRWSEFSFTFPPEEVPRMLKTLRAVPDKELARMQA 483
The following BLAST results are available for this feature:
BLAST of Ec-00_005510.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G197_ECTSI1.040e-5396.84Exostoses (Multiple) 2 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L9T2_9PHAE9.990e-2555.88GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JRU9_9PHAE1.170e-1645.63GT47 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8LQY4_ECTSI4.540e-1358.21Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
A0A6H5KJY5_9PHAE2.290e-1239.22Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
D8LNT2_ECTSI1.570e-1141.18Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
D7FXN9_ECTSI3.360e-1039.22Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
A0A6H5JXY3_9PHAE1.490e-638.89GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8795326..8797609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1481
Hectar predicted targeting categorysignal peptide
Gene idEc-00_005510.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005510Ec-00_005510Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8795326..8797925 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005510.2.2Ec-00_005510.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8795326..8796406 -
Ec-00_005510.2.1Ec-00_005510.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8797210..8797609 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0055103UTR:Ec-00_005510.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 8795326..8796406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005510.2CDS:Ec-00_005510.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8797280..8797588 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0055105UTR:Ec-00_005510.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 8797589..8797609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005510.2Ec-00_005510.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8797280..8797588 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005510.2 ID=Ec-00_005510.2|Name=Ec-00_005510.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=103bp
MLFIFVSACWCSHLLPLRFESTLHIGRSMKRQTKSSLSPAGQVCTKGLLR
HSPPTQTRFSTLSGKKSPSSGFERWRHTCDCGEGLGETFPGEGGLVFVLL
HL*
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spliced messenger RNA

>Ec-00_005510.2 ID=Ec-00_005510.2|Name=Ec-00_005510.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr_00:8795326..8797609- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGAGCACAGTCCCAGTACTAAATGCTATTTATCTTTGTTTCGGCGTGTTG
GTGTAGTCATTTGCTTCCTCTTCGATTCGAGTCAACCCTGCATATCGGAC
GGTCAATGAAGAGACAAACGAAAAGTTCTCTCTCGCCAGCAGGGCAAGTG
TGTACGAAAGGCCTTCTCCGCCACAGCCCACCAACGCAAACACGTTTTTC
CACGTTGTCCGGGAAAAAATCACCGTCTTCAGGCTTTGAGCGCTGGCGCC
ATACCTGTGATTGTGGTGAGGGATTGGGTGAAACCTTTCCCGGAGAAGGT
GGACTGGTCTTCGTTCTCCTTCACCTTTAGCCCAGATGAAGTGCCTCAAA
TGATCGAGGTCCTGAGATCACTCTCTATGGCAGAGACAGAGGAAATGCAG
AGCGATCGAGGCATATTGGAAAATTTACGGCGGCACGACGAACTATTCCT
GGATTTCTAGAATCACCATCGAGATTCTTAGCGAACGGCTGGGATACCAC
AGGCCATGATGTGTTGTTTTGCCTGCTTGTCTTCTTCGCTTTCTTTGTGT
TCCACGTTTGTTTGCCTTTGTGGCGATTGTTCTGAGTTCTCTGGTGTCAT
TTTTTCGTGTTCCGAAGTGTGTAATAACACCTATTTGCACTGGATAGCCG
GTGACCGCGTACGTACGACGCCCGCCTTCCATATGACGAACCTGTACGGA
CATTAGAAGGTACTGTGCAGAGATCGAAACGGTTTGTAGTGCGAACACAA
CATCGATGGATGTTTCTGGAGGTACCCCGCCACGTTTTGTGGGATTTGAG
ATGAAGTAACTTCCGACCGGAGGACGAAGCAGGGGAGGACAGAGCCATTG
TAGTTGGTTATGGAGGGAGCGTGTCGTCCCCCCCTCTCTGCGTCCAGTCT
ACCTTCAAGAGCAAGACAACAGCAAGCGCTTGTTGTTCCAAGAGAATAAT
ATACACGTGAGGTATTCATCGGGGACTTTAGGAATCGCTACTCGTGTCGT
CCCACAACAGACATCCACCAGTACCAGCACAGAAAGGCCAGTCGGACTAT
ACCGAGCTGTCGGCGTCCCGAGACAGCCTTGCCTGGTAGTAGTTTGTTCC
GGGTTGGTGTGATCGGGGCGACATGGCGCTGCTCACGACGATCAGCTTGA
CGTTGTTGTTTGTCTTCACATTGTGTATAACAAGATCTCTAGGCTCGGGC
GCCAGGTGCCCTAGCCCTCACCTCAGCAGTACGCTGAAAGGAACGGTGGC
GGGTGAAGAGTGTGCACAGCATACCAAGGGCACGAAGCTGGAAAAGGCGT
CAATCTGTATATGATACGTAGTAGACTACAGCAGCACCTACCTTCAATAC
TACAGCATCGTTGACAGAATTATTGCGTAAGACCAACTTGCAGGTTTGTG
AAGAAGCAATTTTTCGTGAGATGTGCATGCATGCGGGTGTCCGAACTCAT
TCAGCCCGGAGCACATGCTTTGGAGTACACA
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protein sequence of Ec-00_005510.2

>Ec-00_005510.2 ID=Ec-00_005510.2|Name=Ec-00_005510.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=103bp
MLFIFVSACWCSHLLPLRFESTLHIGRSMKRQTKSSLSPAGQVCTKGLLR
HSPPTQTRFSTLSGKKSPSSGFERWRHTCDCGEGLGETFPGEGGLVFVLL
HL*
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mRNA from alignment at chr_00:8795326..8797609-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005510.2 ID=Ec-00_005510.2|Name=Ec-00_005510.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2284bp|location=Sequence derived from alignment at chr_00:8795326..8797609- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGAGCACAGTCCCAGTACTAAATGCTATTTATCTTTGTTTCGGCGTGTTG
GTGTAGTCATTTGCTTCCTCTTCGATTCGAGTCAACCCTGCATATCGGAC
GGTCAATGAAGAGACAAACGAAAAGTTCTCTCTCGCCAGCAGGGCAAGTG
TGTACGAAAGGCCTTCTCCGCCACAGCCCACCAACGCAAACACGTTTTTC
CACGTTGTCCGGGAAAAAATCACCGTCTTCAGGCTTTGAGCGCTGGCGCC
ATACCTGTGATTGTGGTGAGGGATTGGGTGAAACCTTTCCCGGAGAAGGT
GGACTGGTCTTCGTTCTCCTTCACCTTTAGCCCAGATGAAGTGCCTCAAA
TGATCGAGGTCCTGAGATCACTCTCTATGGCAGAGACAGAGGAAATGCAG
GTGAGTTGTATGGCGCTTGACACGGAACTGGCGACGCCTGGAGTACCGTC
TTCAAACAACTTTGGAAAAAAAAGACTATTGATTTCTTTACAGTCAGGTT
CTGGTCTGAATCTAAGATATTAGGAGTACTGGAACAAATGATCGAAAACG
ACCTTCCGGCCGAGAGTGGGCATGTTTGTTGGGAAACCAGTAAACGACAT
GCAGCAGTAGCAACCGTTCGCATGGCCAGGTAAGTTGTTGGGACCGTCCT
GTGCCGGGAGGCTGCAGGTGCGCCATTACATACCTACAAATCCGAATGGT
ACGACCCAGAATTCGACACGGATGTATTTGGGAACGTTTCGGTCTGCACT
ACTCCAGCTGCAGCCTTCCGACGGCACGGCCCGAGCAACGAACGTGGGCG
GTCGACTAGTCGCCACTTCATGATATCCCGTACTGATTCCCCACCGAATA
TCCGCCGTGTCGCCTGCGTGTCGTCATAGTCAAGTCTAGGTTTTAGATAA
GAAACGTGAAGAAAACACTTCCTTACCCCTGGTCTGTGGGAGAACTGGAG
TACTTTTCCACACTTCCACACTGGTGTCACGCATCCGCGTGTGATCAATC
CTTGTGTGCTCTTCTTCCGCGGTCGTTGTCGAAATCAGTGAAAACCAAGC
TCGGCTGATCATCACTCCCCCCCTTTGATATGTAACTGCCGATGCTTTAC
GAAGTGGATTCGTACTTGGTCGAACATTCCATGGGTCGTTCGCAGCTAAT
GTTTGCATTATCGACGTCCCGCGCTTCTACCCCCGTTGCTTTCCCCAGCG
CAGAGCGATCGAGGCATATTGGAAAATTTACGGCGGCACGACGAACTATT
CCTGGATTTCTAGAATCACCATCGAGATTCTTAGCGAACGGCTGGGATAC
CACAGGCCATGATGTGTTGTTTTGCCTGCTTGTCTTCTTCGCTTTCTTTG
TGTTCCACGTTTGTTTGCCTTTGTGGCGATTGTTCTGAGTTCTCTGGTGT
CATTTTTTCGTGTTCCGAAGTGTGTAATAACACCTATTTGCACTGGATAG
CCGGTGACCGCGTACGTACGACGCCCGCCTTCCATATGACGAACCTGTAC
GGACATTAGAAGGTACTGTGCAGAGATCGAAACGGTTTGTAGTGCGAACA
CAACATCGATGGATGTTTCTGGAGGTACCCCGCCACGTTTTGTGGGATTT
GAGATGAAGTAACTTCCGACCGGAGGACGAAGCAGGGGAGGACAGAGCCA
TTGTAGTTGGTTATGGAGGGAGCGTGTCGTCCCCCCCTCTCTGCGTCCAG
TCTACCTTCAAGAGCAAGACAACAGCAAGCGCTTGTTGTTCCAAGAGAAT
AATATACACGTGAGGTATTCATCGGGGACTTTAGGAATCGCTACTCGTGT
CGTCCCACAACAGACATCCACCAGTACCAGCACAGAAAGGCCAGTCGGAC
TATACCGAGCTGTCGGCGTCCCGAGACAGCCTTGCCTGGTAGTAGTTTGT
TCCGGGTTGGTGTGATCGGGGCGACATGGCGCTGCTCACGACGATCAGCT
TGACGTTGTTGTTTGTCTTCACATTGTGTATAACAAGATCTCTAGGCTCG
GGCGCCAGGTGCCCTAGCCCTCACCTCAGCAGTACGCTGAAAGGAACGGT
GGCGGGTGAAGAGTGTGCACAGCATACCAAGGGCACGAAGCTGGAAAAGG
CGTCAATCTGTATATGATACGTAGTAGACTACAGCAGCACCTACCTTCAA
TACTACAGCATCGTTGACAGAATTATTGCGTAAGACCAACTTGCAGGTTT
GTGAAGAAGCAATTTTTCGTGAGATGTGCATGCATGCGGGTGTCCGAACT
CATTCAGCCCGGAGCACATGCTTTGGAGTACACA
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Coding sequence (CDS) from alignment at chr_00:8795326..8797609-

>Ec-00_005510.2 ID=Ec-00_005510.2|Name=Ec-00_005510.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=309bp|location=Sequence derived from alignment at chr_00:8795326..8797609- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTATTTATCTTTGTTTCGGCGTGTTGGTGTAGTCATTTGCTTCCTCT
TCGATTCGAGTCAACCCTGCATATCGGACGGTCAATGAAGAGACAAACGA
AAAGTTCTCTCTCGCCAGCAGGGCAAGTGTGTACGAAAGGCCTTCTCCGC
CACAGCCCACCAACGCAAACACGTTTTTCCACGTTGTCCGGGAAAAAATC
ACCGTCTTCAGGCTTTGAGCGCTGGCGCCATACCTGTGATTGTGGTGAGG
GATTGGGTGAAACCTTTCCCGGAGAAGGTGGACTGGTCTTCGTTCTCCTT
CACCTTTAG
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Synonyms
The feature 'Ec-00_005510.2' has the following synonyms
Synonym
Esi0443_0018
Esi_0443_0018