Ec-00_005440.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005440.1
Unique NameEc-00_005440.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length137
Homology
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BLAST of Ec-00_005440.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.990e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of Ec-00_005440.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 248 bits (632), Expect = 1.050e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 247 bits (631), Expect = 1.220e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.370e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 249 bits (635), Expect = 3.480e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 7.050e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 245 bits (625), Expect = 1.000e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 244 bits (624), Expect = 1.420e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 244 bits (623), Expect = 2.020e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of Ec-00_005440.1 vs. uniprot
Match: A0A183C227_GLOPA (Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=A0A183C227_GLOPA)

HSP 1 Score: 244 bits (623), Expect = 2.020e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 408
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 136
The following BLAST results are available for this feature:
BLAST of Ec-00_005440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA2.990e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK1.050e-8298.53Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO1.220e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA1.370e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC3.480e-8299.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI7.050e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE1.000e-8197.06Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A6J0UZS0_9SAUR1.420e-8197.06Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
E1ZFV1_CHLVA2.020e-8197.06Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A183C227_GLOPA2.020e-8197.06Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8663765..8664175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.9e-66
Seed eggNOG ortholog2880.D7FWI7
Length411
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
Gene idEc-00_005440.1
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005440Ec-00_005440Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8663765..8664175 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005440.1.1Ec-00_005440.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8663765..8664175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005440.1CDS:Ec-00_005440.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8663765..8664175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005440.1Ec-00_005440.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8663765..8664175 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005440.1 ID=Ec-00_005440.1|Name=Ec-00_005440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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spliced messenger RNA

>Ec-00_005440.1 ID=Ec-00_005440.1|Name=Ec-00_005440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=411bp|location=Sequence derived from alignment at chr_00:8663765..8664175+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCCTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
CTTCCAGCGGCTTGTCCGCGAGATCGCCCAGGACTTCAAGAGCGACCTCC
GCTTCCAGGGATCGGCTGTACTCGCTCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTGGGCCTATTCGAAGACACCAACTTGTGTGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAG
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protein sequence of Ec-00_005440.1

>Ec-00_005440.1 ID=Ec-00_005440.1|Name=Ec-00_005440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at chr_00:8663765..8664175+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005440.1 ID=Ec-00_005440.1|Name=Ec-00_005440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=411bp|location=Sequence derived from alignment at chr_00:8663765..8664175+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCCTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
CTTCCAGCGGCTTGTCCGCGAGATCGCCCAGGACTTCAAGAGCGACCTCC
GCTTCCAGGGATCGGCTGTACTCGCTCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTGGGCCTATTCGAAGACACCAACTTGTGTGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAG
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Coding sequence (CDS) from alignment at chr_00:8663765..8664175+

>Ec-00_005440.1 ID=Ec-00_005440.1|Name=Ec-00_005440.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=411bp|location=Sequence derived from alignment at chr_00:8663765..8664175+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTCGCACGAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGTCCGCACCGGCCACCG
GCGGTGTCAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCCCTGCGC
GAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTCATCCGCAAGCTCCC
CTTCCAGCGGCTTGTCCGCGAGATCGCCCAGGACTTCAAGAGCGACCTCC
GCTTCCAGGGATCGGCTGTACTCGCTCTGCAGGAGGCCGCCGAGGCCTAC
CTTGTGGGCCTATTCGAAGACACCAACTTGTGTGCGATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAG
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Synonyms
The feature 'Ec-00_005440.1' has the following synonyms
Synonym
Esi0442_0013
Esi_0442_0013