Ec-00_005400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_005400.1 vs. uniprot
Match: D7G186_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G186_ECTSI) HSP 1 Score: 659 bits (1700), Expect = 2.000e-232 Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 1 Query: 217 EALADLAQAEAPPAARAESGGLTAQPVSSPARSKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDEGCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 1662 EALADLAQAEAPPAARAESGGLTAQPVSSPARSKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDEGCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT Sbjct: 19 EALADLAQAEAPPAARAESGGLTAQPVSSPARSKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDEGCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 500
BLAST of Ec-00_005400.1 vs. uniprot
Match: D7G4C3_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C3_ECTSI) HSP 1 Score: 600 bits (1547), Expect = 6.110e-209 Identity = 448/450 (99.56%), Postives = 448/450 (99.56%), Query Frame = 1 Query: 313 SKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDEGCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 1662 SKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREE KSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGA EGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDEGCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT Sbjct: 68 SKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREEIKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGALEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDEGCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 517
BLAST of Ec-00_005400.1 vs. uniprot
Match: D7FXI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI4_ECTSI) HSP 1 Score: 459 bits (1181), Expect = 3.380e-155 Identity = 367/429 (85.55%), Postives = 369/429 (86.01%), Query Frame = 1 Query: 388 MMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGKGTXXXXXXXXXXXXXXGGGDE----GCSSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 1662 MMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSY+S NGSQVRR FGKRRMKTLMKWWKGQVDADKKARREESKSTGASGG MDA NANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLD E XXXXXXXXXXXXXXXXXXXX APVDLTGDASAGGGK RKKGEK XXXXXXXXXXXXXXXXXXXX GGGKG XXXXXXXXXXXXXX G SSEEEEQVTDV+LSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXX SKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIE RKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT Sbjct: 1 MMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYISM-NGSQVRRHFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGG-------------MDAFNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDAEGXXXXXXXXXXXXXXXXXXXXXXXXAPVDLTGDASAGGGKYRKKGEKTKQKVTGXXXXXXXXXXXXXXXXXXXXKKES---------GGGKGXXXXXXXXXXXXXXXXXXXXXSWAGSSSEEEEQVTDVALSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXGGGQSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEIRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 406
BLAST of Ec-00_005400.1 vs. uniprot
Match: D7G346_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G346_ECTSI) HSP 1 Score: 278 bits (710), Expect = 2.240e-84 Identity = 314/455 (69.01%), Postives = 316/455 (69.45%), Query Frame = 1 Query: 313 SKMLYDFREKKNIFETIIKLGGGKFMMNKRFSFNNQYGVVVWYNEIAKHVVTRLEKDSSYMSSRNGSQVRRRFGKRRMKTLMKWWKGQVDADKKARREESKSTGASGGKEAKRPRFLTSLRMDALNANPAVNTKQVLNEGFDLGGAFEGGGTKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXSGVGAPVDLTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-GGGKGTXXXXXXXXXXXXXXGGGDEGC----SSEEEEQVTDVSLSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 1662 SKMLYDFREKKNIFETIIKLGGGKFMM TKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXX GVGAPVD+TGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X GGGK XXXXXXXXXXXXXX DEG SSEEEEQVTDV+LSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT Sbjct: 83 SKMLYDFREKKNIFETIIKLGGGKFMM----------------------------------------------------------------------------------------------------------------------------TKRTRIASSGGGKALNLDGEXXXXXXXXXXXXXXXXXXXXXXGVGAPVDVTGDASAGGGKNRKKGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXKESGGGKXXXXXXXXXXXXXXXXXXXDEGSWAGSSSEEEEQVTDVALSPAGEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRRKSKKFSPQDTLHVLGKMNQKAAKQREHNFSRFAGVVEKVLCGGXXXXXXXXXSSGVADRAAELEIEKRKLALDEKKEAEKQWQQAVASEKAGTEGVTKAMVAAAAQRYFSLT 413
BLAST of Ec-00_005400.1 vs. uniprot
Match: A0A6H5KWI5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI5_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.280e-33 Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1 Query: 1 MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH----EALADLAQAEA 249 ++RHAHAPAERHWKAI KILAYLKETRDLGITY+RGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH +A+ L+ EA Sbjct: 148 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEA 234
BLAST of Ec-00_005400.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.500e-33 Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1 Query: 1 MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH----EALADLAQAEA 249 ++RHAHAPAERHWKAI KILAYLKETRDLGITY+RGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH +A+ L+ EA Sbjct: 106 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEA 192
BLAST of Ec-00_005400.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 137 bits (345), Expect = 5.010e-32 Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 1 Query: 1 MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH----EALADLAQAEA 249 ++RHAHAPAERHWKAI KILAYLKETRDLGITYKRGSGLGL VYVDASYADAEDRRSVSGLATTVGGTVISH +A+ L+ EA Sbjct: 187 VARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEA 273
BLAST of Ec-00_005400.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 137 bits (346), Expect = 4.220e-31 Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1 Query: 1 MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH----EALADLAQAEA 249 ++RHAHAPAERHWKAI KILAYLKETRDLGITY+RGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH +A+ L+ EA Sbjct: 315 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEA 401
BLAST of Ec-00_005400.1 vs. uniprot
Match: A0A6H5KZ43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ43_9PHAE) HSP 1 Score: 128 bits (321), Expect = 5.200e-31 Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 1 Query: 1 MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH 216 ++RHAHAPA+RHW AI+KIL YLK TRDLGITY+RGSGLGLAVYVDASYAD EDRRSVSGLATTVGGT++SH Sbjct: 19 VARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTIVSH 90
BLAST of Ec-00_005400.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 137 bits (346), Expect = 6.240e-31 Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 1 Query: 1 MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH----EALADLAQAEA 249 ++RHAHAPAERHWKAI KILAYLKETRDLGITY+RGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISH +A+ L+ EA Sbjct: 402 VARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEA 488 The following BLAST results are available for this feature:
BLAST of Ec-00_005400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_005400.1 ID=Ec-00_005400.1|Name=Ec-00_005400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=555bpback to top spliced messenger RNA >Ec-00_005400.1 ID=Ec-00_005400.1|Name=Ec-00_005400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1710bp|location=Sequence derived from alignment at chr_00:8606417..8611840- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGTCGCGCCACGCCCACGCCCCTGCCGAGAGGCACTGGAAGGCGATACGback to top protein sequence of Ec-00_005400.1 >Ec-00_005400.1 ID=Ec-00_005400.1|Name=Ec-00_005400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=555bp MSRHAHAPAERHWKAIRKILAYLKETRDLGITYKRGSGLGLAVYVDASYAback to top mRNA from alignment at chr_00:8606417..8611840- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_005400.1 ID=Ec-00_005400.1|Name=Ec-00_005400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5424bp|location=Sequence derived from alignment at chr_00:8606417..8611840- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:8606417..8611840- >Ec-00_005400.1 ID=Ec-00_005400.1|Name=Ec-00_005400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1665bp|location=Sequence derived from alignment at chr_00:8606417..8611840- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_005400.1' has the following synonyms
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