Ec-00_005380.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005380.1
Unique NameEc-00_005380.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length332
Homology
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BLAST of Ec-00_005380.1 vs. uniprot
Match: D7G135_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G135_ECTSI)

HSP 1 Score: 595 bits (1534), Expect = 7.870e-214
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1 
Query:    1 MELESSSEDDVFEIQPVRRKGSTRRAVRESSVESVEAMEAPIAAKKSQRKQGGKNKTATARPGAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAAGNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARKWGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQRAGPRTATSLTVRRNTSGTAVGDREYMRETTTPALALRQCGTEVRQHIDLGLPADTKTFAGDEAQAEAVTAAGRGTEAVVAGAVTCATYDRPLDRTRVTTPVVVTSTAPGAVQGAANGLGTHRQVHELILA 993
            MELESSSEDDVFEIQPVRRKGSTRRAVRESSVESVEAMEAPIAAKKSQRKQGGKNKTATARPGAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAAGNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARKWGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQRAGPRTATSLTVRRNTSGTAVGDREYMRETTTPALALRQCGTEVRQHIDLGLPADTKTFAGDEAQAEAVTAAGRGTEAVVAGAVTCATYDRPLDRTRVTTPVVVTSTAPGAVQGAANGLGTHRQVHELILA
Sbjct:    1 MELESSSEDDVFEIQPVRRKGSTRRAVRESSVESVEAMEAPIAAKKSQRKQGGKNKTATARPGAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAAGNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARKWGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQRAGPRTATSLTVRRNTSGTAVGDREYMRETTTPALALRQCGTEVRQHIDLGLPADTKTFAGDEAQAEAVTAAGRGTEAVVAGAVTCATYDRPLDRTRVTTPVVVTSTAPGAVQGAANGLGTHRQVHELILA 331
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BLAST of Ec-00_005380.1 vs. uniprot
Match: D7G7Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y5_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 8.490e-75
Identity = 129/146 (88.36%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:  556 RNRSRPKLESPGMRQRAGPRTATSLTVRRNTSGTAVGDREYMRETTTPALALRQCGTEVRQHIDLGLPADTKTFAGDEAQAEAVTAAGRGTEAVVAGAVTCATYDRPLDRTRVTTPVVVTSTAPGAVQGAANGLGTHRQVHELILA 993
            R RSRPKLESPGMRQRAGP+TAT L+VRRNTSGTAVG REYMRETTTP LALRQ GTEVRQH D GL A+TKTFAGDEAQAEAVTAAGRGT+AVVAGAVTCATYDR LDR+R TTPVVVTSTA GAVQGAANGLGTHRQVHE ILA
Sbjct:   33 RTRSRPKLESPGMRQRAGPQTATPLSVRRNTSGTAVGHREYMRETTTPVLALRQSGTEVRQHTDRGLAAETKTFAGDEAQAEAVTAAGRGTKAVVAGAVTCATYDRALDRSRGTTPVVVTSTALGAVQGAANGLGTHRQVHERILA 178
The following BLAST results are available for this feature:
BLAST of Ec-00_005380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G135_ECTSI7.870e-214100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7Y5_ECTSI8.490e-7588.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8480179..8481478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length996
Hectar predicted targeting categoryother localisation
Gene idEc-00_005380.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005380Ec-00_005380Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8480179..8481478 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005380.1.2Ec-00_005380.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8480179..8480634 -
Ec-00_005380.1.1Ec-00_005380.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8480939..8481478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005380.1CDS:Ec-00_005380.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8480179..8480634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005380.1Ec-00_005380.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8480179..8481478 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005380.1 ID=Ec-00_005380.1|Name=Ec-00_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=332bp
MELESSSEDDVFEIQPVRRKGSTRRAVRESSVESVEAMEAPIAAKKSQRK
QGGKNKTATARPGAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAA
GNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARK
WGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQ
RAGPRTATSLTVRRNTSGTAVGDREYMRETTTPALALRQCGTEVRQHIDL
GLPADTKTFAGDEAQAEAVTAAGRGTEAVVAGAVTCATYDRPLDRTRVTT
PVVVTSTAPGAVQGAANGLGTHRQVHELILA*
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spliced messenger RNA

>Ec-00_005380.1 ID=Ec-00_005380.1|Name=Ec-00_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=996bp|location=Sequence derived from alignment at chr_00:8480179..8481478- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTGGAGTCATCGTCTGAAGACGATGTCTTCGAGATCCAGCCGGT
TCGAAGGAAGGGGTCAACGCGACGCGCAGTTCGTGAGTCGTCGGTGGAGT
CGGTGGAGGCCATGGAGGCGCCAATCGCAGCGAAGAAGAGTCAACGAAAG
CAGGGCGGGAAGAACAAAACCGCTACGGCAAGGCCGGGCGCCCCGGTGAA
AAAACCGCGGGGGAAGTCAACGAACAAAGTCAACGACTCTTCGCACGACT
CTTCGCGAAAGGCGTCCGCCACGGCCCCCAAAAAATGGGGGGTGGCGGCT
GGGAATAGCCCTGCCGCCACGGGTGCGAATGCGAGTGGGAAACCCCAGAA
GAAGAAACGCACCAAACTTCCTCGAGCGAAAGAGTCAGAAGCAGAAAAAG
AGGCGAGGGAGAGGGCGACGGAGGAACTGAAGGAAAGAAAGGCCCGCAAG
TGGGGCACTTTTATTGAGGCGCGGGGAGTCGTGGAACAAGGCCAGGCCGA
GCGGGCAGACAAGAGGAAACAAAACGACCGCTCCCTGCAGGGCGCTGTCA
GCGAAAGAAATCGGAGTCGTCCAAAGCTGGAGAGCCCGGGAATGCGTCAG
CGGGCAGGGCCGCGGACGGCCACCTCTTTGACCGTGAGGAGAAACACCTC
CGGGACAGCCGTGGGCGACAGAGAGTACATGAGGGAAACCACTACGCCAG
CGCTCGCCCTCCGTCAGTGTGGTACGGAGGTTCGTCAGCACATCGACCTT
GGTCTCCCAGCCGATACGAAGACCTTCGCCGGGGACGAAGCTCAAGCAGA
GGCCGTAACCGCAGCCGGTCGAGGCACGGAGGCGGTAGTGGCTGGGGCGG
TGACATGCGCAACCTACGATCGCCCTCTCGATCGAACCAGAGTTACTACC
CCGGTGGTGGTCACGTCTACGGCTCCAGGCGCGGTTCAAGGAGCCGCGAA
CGGTCTGGGTACTCACCGTCAGGTTCACGAACTTATTCTAGCCTAG
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protein sequence of Ec-00_005380.1

>Ec-00_005380.1 ID=Ec-00_005380.1|Name=Ec-00_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=332bp
MELESSSEDDVFEIQPVRRKGSTRRAVRESSVESVEAMEAPIAAKKSQRK
QGGKNKTATARPGAPVKKPRGKSTNKVNDSSHDSSRKASATAPKKWGVAA
GNSPAATGANASGKPQKKKRTKLPRAKESEAEKEARERATEELKERKARK
WGTFIEARGVVEQGQAERADKRKQNDRSLQGAVSERNRSRPKLESPGMRQ
RAGPRTATSLTVRRNTSGTAVGDREYMRETTTPALALRQCGTEVRQHIDL
GLPADTKTFAGDEAQAEAVTAAGRGTEAVVAGAVTCATYDRPLDRTRVTT
PVVVTSTAPGAVQGAANGLGTHRQVHELILA*
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mRNA from alignment at chr_00:8480179..8481478-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005380.1 ID=Ec-00_005380.1|Name=Ec-00_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1300bp|location=Sequence derived from alignment at chr_00:8480179..8481478- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGTTGGAGTCATCGTCTGAAGACGATGTCTTCGAGATCCAGCCGGT
TCGAAGGAAGGGGTCAACGCGACGCGCAGTTCGTGAGTCGTCGGTGGAGT
CGGTGGAGGCCATGGAGGCGCCAATCGCAGCGAAGAAGAGTCAACGAAAG
CAGGGCGGGAAGAACAAAACCGCTACGGCAAGGCCGGGCGCCCCGGTGAA
AAAACCGCGGGGGAAGTCAACGAACAAAGTCAACGACTCTTCGCACGACT
CTTCGCGAAAGGCGTCCGCCACGGCCCCCAAAAAATGGGGGGTGGCGGCT
GGGAATAGCCCTGCCGCCACGGGTGCGAATGCGAGTGGGAAACCCCAGAA
GAAGAAACGCACCAAACTTCCTCGAGCGAAAGAGTCAGAAGCAGAAAAAG
AGGCGAGGGAGAGGGCGACGGAGGAACTGAAGGAAAGAAAGGCCCGCAAG
TGGGGCACTTTTATTGAGGCGCGGGGAGTCGTGGAACAAGGCCAGGCCGA
GCGGGCAGACAAGAGGAAACAAAACGACCGCTCCCTGCAGGTGATCAAAA
GTATAGCAGCACGAGTGTTATGGGACTATGACAGCGTTGCTCTTATAAAT
GGTCCGCCTCCGCATCGCCACCCACCTCGTCCTGCAGCGTGTACTTTTTC
CTCCCGGCTGCCTAACCCACGGCCCATCCCAAAGCATCTGTCTTAACCAT
TTACACCGCCTGTCTATCCGGGTCGCAGTAGATGTAAGACCATCACTGCG
CCCTTATGTCGTTACTACGAAAGGATGTGGACGTCCGTCTGTTGCGAATG
TGCGTAGTTTCATGTCGCCCCTACCTTCAAACATGCTGCACCAGGGCGCT
GTCAGCGAAAGAAATCGGAGTCGTCCAAAGCTGGAGAGCCCGGGAATGCG
TCAGCGGGCAGGGCCGCGGACGGCCACCTCTTTGACCGTGAGGAGAAACA
CCTCCGGGACAGCCGTGGGCGACAGAGAGTACATGAGGGAAACCACTACG
CCAGCGCTCGCCCTCCGTCAGTGTGGTACGGAGGTTCGTCAGCACATCGA
CCTTGGTCTCCCAGCCGATACGAAGACCTTCGCCGGGGACGAAGCTCAAG
CAGAGGCCGTAACCGCAGCCGGTCGAGGCACGGAGGCGGTAGTGGCTGGG
GCGGTGACATGCGCAACCTACGATCGCCCTCTCGATCGAACCAGAGTTAC
TACCCCGGTGGTGGTCACGTCTACGGCTCCAGGCGCGGTTCAAGGAGCCG
CGAACGGTCTGGGTACTCACCGTCAGGTTCACGAACTTATTCTAGCCTAG
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Coding sequence (CDS) from alignment at chr_00:8480179..8481478-

>Ec-00_005380.1 ID=Ec-00_005380.1|Name=Ec-00_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=996bp|location=Sequence derived from alignment at chr_00:8480179..8481478- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGTTGGAGTCATCGTCTGAAGACGATGTCTTCGAGATCCAGCCGGT
TCGAAGGAAGGGGTCAACGCGACGCGCAGTTCGTGAGTCGTCGGTGGAGT
CGGTGGAGGCCATGGAGGCGCCAATCGCAGCGAAGAAGAGTCAACGAAAG
CAGGGCGGGAAGAACAAAACCGCTACGGCAAGGCCGGGCGCCCCGGTGAA
AAAACCGCGGGGGAAGTCAACGAACAAAGTCAACGACTCTTCGCACGACT
CTTCGCGAAAGGCGTCCGCCACGGCCCCCAAAAAATGGGGGGTGGCGGCT
GGGAATAGCCCTGCCGCCACGGGTGCGAATGCGAGTGGGAAACCCCAGAA
GAAGAAACGCACCAAACTTCCTCGAGCGAAAGAGTCAGAAGCAGAAAAAG
AGGCGAGGGAGAGGGCGACGGAGGAACTGAAGGAAAGAAAGGCCCGCAAG
TGGGGCACTTTTATTGAGGCGCGGGGAGTCGTGGAACAAGGCCAGGCCGA
GCGGGCAGACAAGAGGAAACAAAACGACCGCTCCCTGCAGGGCGCTGTCA
GCGAAAGAAATCGGAGTCGTCCAAAGCTGGAGAGCCCGGGAATGCGTCAG
CGGGCAGGGCCGCGGACGGCCACCTCTTTGACCGTGAGGAGAAACACCTC
CGGGACAGCCGTGGGCGACAGAGAGTACATGAGGGAAACCACTACGCCAG
CGCTCGCCCTCCGTCAGTGTGGTACGGAGGTTCGTCAGCACATCGACCTT
GGTCTCCCAGCCGATACGAAGACCTTCGCCGGGGACGAAGCTCAAGCAGA
GGCCGTAACCGCAGCCGGTCGAGGCACGGAGGCGGTAGTGGCTGGGGCGG
TGACATGCGCAACCTACGATCGCCCTCTCGATCGAACCAGAGTTACTACC
CCGGTGGTGGTCACGTCTACGGCTCCAGGCGCGGTTCAAGGAGCCGCGAA
CGGTCTGGGTACTCACCGTCAGGTTCACGAACTTATTCTAGCCTAG
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Synonyms
The feature 'Ec-00_005380.1' has the following synonyms
Synonym
Esi0432_0018
Esi_0432_0018