Ec-00_005330.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005330.1
Unique NameEc-00_005330.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length51
Homology
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BLAST of Ec-00_005330.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.050e-6
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 3 
Query:   12 CGDGTSSSLNCTKEVCCGSGLRIIADGQEVDELLQFSREMPVADGDM 152
            C +G S  L          GLRII DGQEVDELL+FSR+MPVADG M
Sbjct:   93 CPEGVSPCL-------ANGGLRIIVDGQEVDELLRFSRQMPVADGTM 132
The following BLAST results are available for this feature:
BLAST of Ec-00_005330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW2_ECTSI2.050e-659.57Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8281315..8282452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length153
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_005330.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005330Ec-00_005330Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8281315..8282452 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005330.1.2Ec-00_005330.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8281315..8281398 -
Ec-00_005330.1.1Ec-00_005330.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8282384..8282452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005330.1CDS:Ec-00_005330.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8281315..8281398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005330.1Ec-00_005330.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8281315..8282452 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005330.1 ID=Ec-00_005330.1|Name=Ec-00_005330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=51bp
MMSTAATAPAAALTVLKKFAAVQDCGSLPTAKRWTNSFNSPGRCRWQTVT
*
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spliced messenger RNA

>Ec-00_005330.1 ID=Ec-00_005330.1|Name=Ec-00_005330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=153bp|location=Sequence derived from alignment at chr_00:8281315..8282452- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCGACTGCGGCGACGGCACCAGCAGCAGCCTTAACTGTACTAAA
GAAGTTTGCTGCGGTTCAGGACTGCGGATCATTGCCGACGGCCAAGAGGT
GGACGAACTCCTTCAATTCTCCCGGGAGATGCCGGTGGCAGACGGTGACA
TGA
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protein sequence of Ec-00_005330.1

>Ec-00_005330.1 ID=Ec-00_005330.1|Name=Ec-00_005330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=51bp
MMSTAATAPAAALTVLKKFAAVQDCGSLPTAKRWTNSFNSPGRCRWQTVT
*
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mRNA from alignment at chr_00:8281315..8282452-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005330.1 ID=Ec-00_005330.1|Name=Ec-00_005330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1138bp|location=Sequence derived from alignment at chr_00:8281315..8282452- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTCGACTGCGGCGACGGCACCAGCAGCAGCCTTAACTGTACTAAA
GAAGTTTGCTGCGGTTCAGGTAAGACAGCGCGTGTTAGAGTTTCTGTTAG
TGGGACTGTCTAATGCGCGCTGCTGTCTAGCCGTCCATTTTGATACTATT
TATGCTATATATGCGTTTGTTGCTAGAGTTGTCTTCGCTTTTTTGCTCCT
CCCATGCATAGGCACCATGATGTTGATACGACCCTAAAATTTTGCACGGT
GTTCATGTATCGCGTGGTATCTTTGCCCTACCGTCTGTGCAACCATCAGT
ACCGCCAGCGCCTACGCCGCCAACGCCAACGCCGCCAACACCTACGCCTA
CGCCGCCAACACCTACGCCGGGCCCTGGTAAGATAAAAGGTGTCGAATCG
GCGTGGCTTCCTGTAATGTTGTATATATAGCCGAAACGAACCCGAGGTCG
GAGTACCTCCATTATCTATTGATATGATTTCGTTGTTTTACTATATTTTG
TCTATAACCCTCCAACAATACTCCAGATTAGACTAAATCAAGAATAACAA
AAAACATTGTCAAGCTTCCGCACTGAACTTCGAACGCTAAACGGCTTAGG
CGACCACCCTCGAATGCATGTTGAGGCGCGAAGTATTTGCTTGAAATGTA
TGTAGTCTCCATTTGGCTCTTCAGATGTGTTATTTCAAAGTGCAGAGAAG
GGTCACGCTGTGCACGGTTAGTGTCGACATTTGTATGTCGTGCCACTTAC
CACACGGCTTGCGATACGTCTGTACCCCTTCGCTTTCAGTTGATGACATG
TGGGGTGACCCCCACATGAGAGGGCTCCGTGGCCAGACAATTAACTGGTC
TGGGGTTGACGGCGGCTGGTACTCCCTGATCAAGGACGACAACGCCGATC
TCAACGTCAATGTTCGCGTCACCGCTCCTCCAGCTGATGACCAGCCTGGC
TGTTCTGTCAGAGGGGCACTCTCTCGTCATCGAGGTCGCCAACCCTTACA
CCACCGATACGGACGGCTGCCCTGAGGGGGTCTCGCCCTGCCTTTCGAAC
GGAGGACTGCGGATCATTGCCGACGGCCAAGAGGTGGACGAACTCCTTCA
ATTCTCCCGGGAGATGCCGGTGGCAGACGGTGACATGA
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Coding sequence (CDS) from alignment at chr_00:8281315..8282452-

>Ec-00_005330.1 ID=Ec-00_005330.1|Name=Ec-00_005330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=153bp|location=Sequence derived from alignment at chr_00:8281315..8282452- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTCGACTGCGGCGACGGCACCAGCAGCAGCCTTAACTGTACTAAA
GAAGTTTGCTGCGGTTCAGGACTGCGGATCATTGCCGACGGCCAAGAGGT
GGACGAACTCCTTCAATTCTCCCGGGAGATGCCGGTGGCAGACGGTGACA
TGA
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Synonyms
The feature 'Ec-00_005330.1' has the following synonyms
Synonym
Esi0428_0016
Esi_0428_0016