Ec-00_005280.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005280.1
Unique NameEc-00_005280.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length382
Homology
BLAST of Ec-00_005280.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 704 bits (1817), Expect = 3.080e-254
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1
Query:    1 MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQGXXXXXXXXXXXAPSLMIT 1143
            MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQGXXXXXXXXXXXAPSLMIT
Sbjct:   65 MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQGXXXXXXXXXXXAPSLMIT 445          
BLAST of Ec-00_005280.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 446 bits (1148), Expect = 4.010e-143
Identity = 243/299 (81.27%), Postives = 257/299 (85.95%), Query Frame = 1
Query:   25 MHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSA-FHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMK 918
            MHYI LERLINTSHARQISQ+SVKLLQQSIQSQDFME+ +P +   I +G   A F      ++     L      VA KAV PGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKE YAKAKQAVPSDSTLRSWLKAVRGIKEEALTAL+DLVESEDKS+DLNLVTLAYISK DFMALSAEEQGFNLQILARWKKFQQGRAFKAD+DTPPIIAQAKDVAQWYFALCGIVPYQDWSQELK +  E+ A  +P+   F K
Sbjct:    1 MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMEN-QPLSV--IFKGVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILARWKKFQQGRAFKADIDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKSEF-ENMAYAKPALWSFQK 295          
BLAST of Ec-00_005280.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 5.530e-98
Identity = 173/195 (88.72%), Postives = 175/195 (89.74%), Query Frame = 1
Query:  505 AKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQG 1089
            AKQAVPSDSTLRSWLKAVRGIKEEALTAL+DLVESEDKS+DLNLVTLAYISK DFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKR                   LKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQG
Sbjct:   20 AKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKR-------------------LKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQG 195          
The following BLAST results are available for this feature:
BLAST of Ec-00_005280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G124_ECTSI3.080e-254100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN26_9PHAE4.010e-14381.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG8_ECTSI5.530e-9888.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8105665..8108219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1146
Hectar predicted targeting categoryother localisation
Gene idEc-00_005280.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005280Ec-00_005280Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8105665..8108219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005280.1Ec-00_005280.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8105665..8108219 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005280.1.1Ec-00_005280.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8105665..8106010 +
Ec-00_005280.1.2Ec-00_005280.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8106250..8106407 +
Ec-00_005280.1.3Ec-00_005280.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8106651..8106865 +
Ec-00_005280.1.4Ec-00_005280.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8107074..8107221 +
Ec-00_005280.1.5Ec-00_005280.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8107941..8108219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005280.1CDS:Ec-00_005280.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8105665..8106010 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=382bp
MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPA
AFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQC
YSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETS
RSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDL
VESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAF
KADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPS
YEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAK
GRRRTARKSKTQGGGEEDEEEEEEAPSLMIT*
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spliced messenger RNA

>Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1146bp|location=Sequence derived from alignment at chr_00:8105665..8108219+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGGAGCGTAGCCTCGGGATGCACTACATCTTACTGGAAAGGCT
GATCAACACGAGCCACGCTCGGCAGATTAGCCAAAGGAGCGTGAAGCTCC
TTCAACAATCGATCCAGTCCCAGGACTTCATGGAGCATGGAGAACCAGCC
GCTTTCTGTGATATTCAAAGGGGTTCATCAAGCGCCTTTCACACAAGAGG
ATGCCGACAAAGCCGGGCCCGCCAGCGTCTTGGACGGGAACCATCGTTTG
TAGCCCCCAAGGCCGTCATGCCTGGTGATTTTCTGGTCCCGTGCCAATGC
TACTCGGACATCAAGGACGCAAACGTGAAGAGGATAGTGGCAGATGCGTG
CAATGATGCCACCTCGACGTTCGCCGAACGCACTATCTACGATCGGCTGT
ACTTCTTCAGCTCCCTCTACAAGGGAGCACAGGCTTCGCTGGAAACGTCA
CGGTCCCGTAGTAGGCAAGTGAACCCCAAGGACATCAAGGAACTCTACGC
GAAGGCAAAGCAGGCGGTCCCCAGCGACTCCACGCTTCGCAGCTGGCTGA
AGGCCGTGAGGGGCATCAAAGAGGAAGCACTCACCGCCCTAGAGGACCTG
GTCGAGTCCGAAGATAAGTCCGTCGACCTCAACCTCGTCACCCTAGCTTA
CATCAGCAAGGTTGACTTCATGGCGCTTTCAGCTGAGGAGCAGGGCTTCA
ATCTACAGATCCTGGCCAGGTGGAAGAAGTTCCAACAAGGAAGAGCATTC
AAGGCGGACGTCGACACCCCCCCGATCATTGCGCAGGCTAAGGACGTGGC
ACAATGGTACTTCGCCCTTTGTGGCATCGTGCCTTACCAGGATTGGTCGC
AGGAGCTTAAAAGGCAGATTCTGGAGTCCGACGCCTCTCTACGGCCATCG
TACGAGGATTTTATGAAGAGGCTCAAGGAGGCGAAGAATGCGGTTACGAG
GAAGAAGCTGCAGCTGGCGAAACCCATGAAACGCCCTTCCGAGCGCAAGA
GGAAAGGGAAGTCGTGGGGGGGAGCAGGGAGAGGGAGTAGAGGGGCGAAA
GGACGGAGACGAACTGCAAGGAAGAGCAAAACCCAAGGGGGGGGGGAGGA
AGACGAGGAGGAGGAGGAGGAGGCACCGTCGTTGATGATAACGTAA
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protein sequence of Ec-00_005280.1

>Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=382bp
MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPA
AFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQC
YSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETS
RSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDL
VESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAF
KADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPS
YEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAK
GRRRTARKSKTQGGGEEDEEEEEEAPSLMIT*
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mRNA from alignment at chr_00:8105665..8108219+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2555bp|location=Sequence derived from alignment at chr_00:8105665..8108219+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGAAGGAGCGTAGCCTCGGGATGCACTACATCTTACTGGAAAGGCT GATCAACACGAGCCACGCTCGGCAGATTAGCCAAAGGAGCGTGAAGCTCC TTCAACAATCGATCCAGTCCCAGGACTTCATGGAGCATGGAGAACCAGCC GCTTTCTGTGATATTCAAAGGGGTTCATCAAGCGCCTTTCACACAAGAGG ATGCCGACAAAGCCGGGCCCGCCAGCGTCTTGGACGGGAACCATCGTTTG TAGCCCCCAAGGCCGTCATGCCTGGTGATTTTCTGGTCCCGTGCCAATGC TACTCGGACATCAAGGACGCAAACGTGAAGAGGATAGTGGCAGATGGTGA GTTCATGGCAGTTGCTAGACTTAACATGATGTTTGTAGTGTTGGCGCAGT ATCTTACGGGTCCTACCGCTTTTTTGCTGCTGCTGAATCGTTCGTATTGA CGTATCCGAAAACGACTAGGGGGTCGATGTTTGACGATGTCCACACACAC ATATACTTAGAACAATACACCATTATCTCACTCAACATTCAAGTGCTCTG ACCTTTTTCCCTGTTTGTTCTTCACTACTCCTCAGCGTGCAATGATGCCA CCTCGACGTTCGCCGAACGCACTATCTACGATCGGCTGTACTTCTTCAGC TCCCTCTACAAGGGAGCACAGGCTTCGCTGGAAACGTCACGGTCCCGTAG TAGGCAAGTGAACCCCAAGGACATCAAGGAACTCTACGCGAAGGTAAGCA CGTGTTTGGTAAGAAGATTATCATGAAAAGTCAACAACAACGCTATATCA AACGGATGTTCTTCACCGATCGACGTAGTAGTGGTATCGTTTTGTTGTGT GGAATACTCTGTGTACTTGCCGTAGCTCATACGGTAGTCGTACATACTAA TTGCACAATACCCCCGCTCAATAGTTTGTGTATCAGCAGCAGCAGCAGCA GCAGTAACTATCTGGTTGTCGCTTTCGCTTCTTCAGGCAAAGCAGGCGGT CCCCAGCGACTCCACGCTTCGCAGCTGGCTGAAGGCCGTGAGGGGCATCA AAGAGGAAGCACTCACCGCCCTAGAGGACCTGGTCGAGTCCGAAGATAAG TCCGTCGACCTCAACCTCGTCACCCTAGCTTACATCAGCAAGGTTGACTT CATGGCGCTTTCAGCTGAGGAGCAGGGCTTCAATCTACAGATCCTGGCCA GGCAATGTTGGACTAGATAGACGTACGCGACTGTTACAGCAGCAACGAAG GTCAAACTTACCGTTGGCAGTACCTGTCTCCGACAGACCGTTATTTCTTC GTTCCCGCGGAATCCACTCTCTCGACCATGATCTATGGACCATGATCCCA ACTTCATGTTCTTCCCCCATCGTCGAACCCAAATCCACGATATACTTGTA ACGTGTCAGGTGGAAGAAGTTCCAACAAGGAAGAGCATTCAAGGCGGACG TCGACACCCCCCCGATCATTGCGCAGGCTAAGGACGTGGCACAATGGTAC TTCGCCCTTTGTGGCATCGTGCCTTACCAGGATTGGTCGCAGGAGCTTAA AAGGCAGGTGCCCACGTTTGTTTTTCTTAGGCAGCGCAAAGAACGTCTCA GCCCTCTGAAAAACTCCTGTCCAGGAACGGGTACCTCGCATGTCTGATCG ATGCAGTTGACACCTAGGTACCCATGATTGTGCCCCTCGCAATTGTTGCC ATTCGTCCCGTCGTCGCCCCCTCGTTAAATCTATCCAACAGCAAGTTCGA AAATATGGCCTACGCGAAGCCTGCTTTGTGGTCGTTCCAGAAAGCCTTCC TCGACGGTCTCGAGGATGAGGTTTTGAAGCTCAGCAAAGGTCTCCCACAA CACGGCGGTAAAAGCGTCCCCAAGCTTGAGGAATGGATCGTCCAGGCCCT TCGCTCACAGCAGCCCAGCAGGATCAAAAAGGTCGTTTCCCTACAGTATG GGTTAATAAATCTCGTCGGCCACCCCACTCCCCCGTAGTCCTTGAAGTAA TGTACCGTGATGAGCTAGTGAGCGCAAGCTTAAGGCCCAATAAGCATCGC GGGCATAACATTGTCCATGCAGATACATTAGTCTGACTGATCGTCTGGCC CTATCAACACACGATCTCTGCCACTTCTGTAACGGCTGCATCCCGCTCAA GTCGTGCCCAGATGGTCGCGATGACACTTGTGTTCAATGGAATGTTGAGA TGTATATCTACCTTGCGCTGCTACGCGCTTTTTTCTGTGTTGTTTGCCAT TTTTTGTTCTCGCATCTTGAGTGAAGATTCTGGAGTCCGACGCCTCTCTA CGGCCATCGTACGAGGATTTTATGAAGAGGCTCAAGGAGGCGAAGAATGC GGTTACGAGGAAGAAGCTGCAGCTGGCGAAACCCATGAAACGCCCTTCCG AGCGCAAGAGGAAAGGGAAGTCGTGGGGGGGAGCAGGGAGAGGGAGTAGA GGGGCGAAAGGACGGAGACGAACTGCAAGGAAGAGCAAAACCCAAGGGGG GGGGGAGGAAGACGAGGAGGAGGAGGAGGAGGCACCGTCGTTGATGATAA CGTAA
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Coding sequence (CDS) from alignment at chr_00:8105665..8108219+

>Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1146bp|location=Sequence derived from alignment at chr_00:8105665..8108219+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGAAGGAGCGTAGCCTCGGGATGCACTACATCTTACTGGAAAGGCT
GATCAACACGAGCCACGCTCGGCAGATTAGCCAAAGGAGCGTGAAGCTCC
TTCAACAATCGATCCAGTCCCAGGACTTCATGGAGCATGGAGAACCAGCC
GCTTTCTGTGATATTCAAAGGGGTTCATCAAGCGCCTTTCACACAAGAGG
ATGCCGACAAAGCCGGGCCCGCCAGCGTCTTGGACGGGAACCATCGTTTG
TAGCCCCCAAGGCCGTCATGCCTGGTGATTTTCTGGTCCCGTGCCAATGC
TACTCGGACATCAAGGACGCAAACGTGAAGAGGATAGTGGCAGATGCGTG
CAATGATGCCACCTCGACGTTCGCCGAACGCACTATCTACGATCGGCTGT
ACTTCTTCAGCTCCCTCTACAAGGGAGCACAGGCTTCGCTGGAAACGTCA
CGGTCCCGTAGTAGGCAAGTGAACCCCAAGGACATCAAGGAACTCTACGC
GAAGGCAAAGCAGGCGGTCCCCAGCGACTCCACGCTTCGCAGCTGGCTGA
AGGCCGTGAGGGGCATCAAAGAGGAAGCACTCACCGCCCTAGAGGACCTG
GTCGAGTCCGAAGATAAGTCCGTCGACCTCAACCTCGTCACCCTAGCTTA
CATCAGCAAGGTTGACTTCATGGCGCTTTCAGCTGAGGAGCAGGGCTTCA
ATCTACAGATCCTGGCCAGGTGGAAGAAGTTCCAACAAGGAAGAGCATTC
AAGGCGGACGTCGACACCCCCCCGATCATTGCGCAGGCTAAGGACGTGGC
ACAATGGTACTTCGCCCTTTGTGGCATCGTGCCTTACCAGGATTGGTCGC
AGGAGCTTAAAAGGCAGATTCTGGAGTCCGACGCCTCTCTACGGCCATCG
TACGAGGATTTTATGAAGAGGCTCAAGGAGGCGAAGAATGCGGTTACGAG
GAAGAAGCTGCAGCTGGCGAAACCCATGAAACGCCCTTCCGAGCGCAAGA
GGAAAGGGAAGTCGTGGGGGGGAGCAGGGAGAGGGAGTAGAGGGGCGAAA
GGACGGAGACGAACTGCAAGGAAGAGCAAAACCCAAGGGGGGGGGGAGGA
AGACGAGGAGGAGGAGGAGGAGGCACCGTCGTTGATGATAACGTAA
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Synonyms
The feature 'Ec-00_005280.1' has the following synonyms
Synonym
Esi0426_0007
Esi_0426_0007