Ec-00_005280.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_005280.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI) HSP 1 Score: 704 bits (1817), Expect = 3.080e-254 Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1 Query: 1 MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQGXXXXXXXXXXXAPSLMIT 1143 MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQGXXXXXXXXXXXAPSLMIT Sbjct: 65 MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQGXXXXXXXXXXXAPSLMIT 445
BLAST of Ec-00_005280.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE) HSP 1 Score: 446 bits (1148), Expect = 4.010e-143 Identity = 243/299 (81.27%), Postives = 257/299 (85.95%), Query Frame = 1 Query: 25 MHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSA-FHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMK 918 MHYI LERLINTSHARQISQ+SVKLLQQSIQSQDFME+ +P + I +G A F ++ L VA KAV PGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKE YAKAKQAVPSDSTLRSWLKAVRGIKEEALTAL+DLVESEDKS+DLNLVTLAYISK DFMALSAEEQGFNLQILARWKKFQQGRAFKAD+DTPPIIAQAKDVAQWYFALCGIVPYQDWSQELK + E+ A +P+ F K Sbjct: 1 MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMEN-QPLSV--IFKGVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILARWKKFQQGRAFKADIDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKSEF-ENMAYAKPALWSFQK 295
BLAST of Ec-00_005280.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI) HSP 1 Score: 319 bits (818), Expect = 5.530e-98 Identity = 173/195 (88.72%), Postives = 175/195 (89.74%), Query Frame = 1 Query: 505 AKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKRQILESDASLRPSYEDFMKRLKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQG 1089 AKQAVPSDSTLRSWLKAVRGIKEEALTAL+DLVESEDKS+DLNLVTLAYISK DFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKR LKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQG Sbjct: 20 AKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKR-------------------LKEAKNAVTRKKLQLAKPMKRPSERKRKGKSWGGAGRGSRGAKGRRRTARKSKTQG 195 The following BLAST results are available for this feature:
BLAST of Ec-00_005280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=382bpback to top spliced messenger RNA >Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1146bp|location=Sequence derived from alignment at chr_00:8105665..8108219+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGCTGAAGGAGCGTAGCCTCGGGATGCACTACATCTTACTGGAAAGGCTback to top protein sequence of Ec-00_005280.1 >Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=382bp MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAback to top mRNA from alignment at chr_00:8105665..8108219+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2555bp|location=Sequence derived from alignment at chr_00:8105665..8108219+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:8105665..8108219+ >Ec-00_005280.1 ID=Ec-00_005280.1|Name=Ec-00_005280.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1146bp|location=Sequence derived from alignment at chr_00:8105665..8108219+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_005280.1' has the following synonyms
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