Ec-00_005270.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005270.1
Unique NameEc-00_005270.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length250
Homology
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BLAST of Ec-00_005270.1 vs. uniprot
Match: D7G0S0_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S0_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 3.250e-112
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 
Query:    1 MPNRHYHSHAGGLDREDRGGVTRFSRSKXXXXXXXXXXXXXXXXXEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVGRQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGAGSXXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXXXDREITITSAMTPAEAMARVMVVLGGAAAGPIFIYMLQKHMEEHVERFVKVALTVRSLVIAVVEYNVVLMLLKY 747
            MPNRHYHSHAGGLDREDRGGVTRFSRSKXXXXXXXXXXXXXXXXXEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVGRQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGAGSXXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXXXDREITITSAMTPAEAMARVMVVLGGAAAGPIFIYMLQKHMEEHVERFVKVALTVRSLVIAVVEYNVVLMLLKY
Sbjct:    1 MPNRHYHSHAGGLDREDRGGVTRFSRSKXXXXXXXXXXXXXXXXXEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVGRQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGAGSXXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXXXDREITITSAMTPAEAMARVMVVLGGAAAGPIFIYMLQKHMEEHVERFVKVALTVRSLVIAVVEYNVVLMLLKY 249
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BLAST of Ec-00_005270.1 vs. uniprot
Match: D7FJ81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ81_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 6.730e-28
Identity = 88/99 (88.89%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:   55 GGVTRFSRSKXXXXXXXXXXXXXXXXXEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVG------RQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGA 333
            GGVTRFSRSKXXXXXXXXXXXXXXX  EEP VDDDVEADLSSVRNVSAGSDPSARASKSV       RQSTGAAPQGSSSQTVPAPSTRR+SAPPVTGA
Sbjct:   28 GGVTRFSRSKXXXXXXXXXXXXXXXQAEEPFVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGACRQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGA 126
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BLAST of Ec-00_005270.1 vs. uniprot
Match: D7FVS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS2_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.390e-7
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 2 
Query:  584 LWWFSAELRQAQSSSTCFRSIWRNT 658
            LWWFSAELRQAQSSSTCFRSIWRNT
Sbjct:  124 LWWFSAELRQAQSSSTCFRSIWRNT 148
The following BLAST results are available for this feature:
BLAST of Ec-00_005270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0S0_ECTSI3.250e-112100.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FJ81_ECTSI6.730e-2888.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVS2_ECTSI2.390e-7100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8030908..8033943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length750
Hectar predicted targeting categoryother localisation
Gene idEc-00_005270.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005270Ec-00_005270Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8030908..8033943 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005270.1.1Ec-00_005270.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8030908..8030938 +
Ec-00_005270.1.2Ec-00_005270.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8031379..8031479 +
Ec-00_005270.1.3Ec-00_005270.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8032443..8032967 +
Ec-00_005270.1.4Ec-00_005270.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8033851..8033943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005270.1CDS:Ec-00_005270.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8030908..8030938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005270.1Ec-00_005270.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8030908..8033943 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005270.1 ID=Ec-00_005270.1|Name=Ec-00_005270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=250bp
MPNRHYHSHAGGLDREDRGGVTRFSRSKSKGKGKKHASPPPQAQAEEPNV
DDDVEADLSSVRNVSAGSDPSARASKSVGRQSTGAAPQGSSSQTVPAPST
RRKSAPPVTGAGSGSGGGSSSAAPAASSAATSSQSTSRRTSGTFGEITPS
RPAAASGFGSGAAPVAADAASGSGSSDREITITSAMTPAEAMARVMVVLG
GAAAGPIFIYMLQKHMEEHVERFVKVALTVRSLVIAVVEYNVVLMLLKY*
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spliced messenger RNA

>Ec-00_005270.1 ID=Ec-00_005270.1|Name=Ec-00_005270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=750bp|location=Sequence derived from alignment at chr_00:8030908..8033943+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAACCGGCACTACCACAGTCATGCTGGCGGGCTGGATCGCGAGGA
CAGGGGGGGGGTAACCCGCTTCTCCCGCTCCAAGTCTAAGGGAAAGGGGA
AGAAGCATGCTTCGCCACCGCCGCAGGCTCAAGCGGAGGAGCCCAATGTC
GATGATGATGTTGAGGCGGACCTGTCTTCCGTCAGGAACGTCTCCGCAGG
CTCGGATCCGTCGGCCAGAGCGTCGAAGAGTGTTGGTAGGCAGTCGACGG
GGGCTGCCCCGCAGGGTTCGTCTTCGCAGACGGTACCTGCCCCGTCCACA
CGTCGCAAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGG
CGGCAGCAGCAGTGCCGCGCCCGCAGCATCCTCCGCCGCAACATCTTCGC
AGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCACACCCTCG
CGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGC
TGATGCTGCCTCCGGCTCCGGTTCTTCTGATCGTGAGATCACGATAACGT
CCGCCATGACCCCGGCTGAAGCCATGGCGCGCGTTATGGTGGTTCTCGGC
GGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGCATATGGA
GGAACACGTAGAGCGATTCGTCAAAGTTGCCCTGACCGTAAGGTCTCTAG
TCATCGCGGTGGTCGAATACAACGTTGTGCTTATGCTGCTGAAATATTAG
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protein sequence of Ec-00_005270.1

>Ec-00_005270.1 ID=Ec-00_005270.1|Name=Ec-00_005270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=250bp
MPNRHYHSHAGGLDREDRGGVTRFSRSKSKGKGKKHASPPPQAQAEEPNV
DDDVEADLSSVRNVSAGSDPSARASKSVGRQSTGAAPQGSSSQTVPAPST
RRKSAPPVTGAGSGSGGGSSSAAPAASSAATSSQSTSRRTSGTFGEITPS
RPAAASGFGSGAAPVAADAASGSGSSDREITITSAMTPAEAMARVMVVLG
GAAAGPIFIYMLQKHMEEHVERFVKVALTVRSLVIAVVEYNVVLMLLKY*
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mRNA from alignment at chr_00:8030908..8033943+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005270.1 ID=Ec-00_005270.1|Name=Ec-00_005270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3036bp|location=Sequence derived from alignment at chr_00:8030908..8033943+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCAACCGGCACTACCACAGTCATGCTGGTATGTCGGCGGTACTGCT
GTACGACCCCGCGCCTCCTGACATCGGACATGGCCGGGTTGAAATCTAGC
TTGGTGTTGACGTAACGCCCGCGTGTCACGCGCTTCCGTTCCGCAGAAAC
AGGCAAATCTTCCTTGTTTTTTATGAGACGTCGCCCGCTCCGCCTCGCGC
CCGGCCATTACTTATGTACACATATGTCAACTCTGTGTTGCCTGCTGCCT
AGACAACGGTTTCACGCACATCGCACGGGCGCGGCGTAGGAAAGAATAAA
GTCACAACGAAACGGAAAAAAGTAACGCCTTTTTTTTTTAAACCTTCTAA
TGGTTGAACCTGTCCCACGTCAGAAACCCTCACTCCCCGCCCACCACCCA
CACAGACGCGCGCCATGGCGTCAAGAGGGTCGGGTTCATCAACCCGTAGG
GCTACCCCTGATGCCATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGG
GTAACCCGCTTCTCCCGCTCCAAGTCTAAGGGAAAGGGGAAGAAGCATGC
TTCGCCACCGCCGCAGGCTCAAGTAAGTTCGCGCGATACCGATGGGACCT
GTCATGGGGTTAGTGCAGCTGCTGTTGAGGAGGCTCAGCGATATCTTGGT
CCATTGTCGGATTTGATAGATTCACCAGTGAGCGGTTCCCACAGAGGCCG
GCGCCTGCGCAAGCTCAGGTCCAAGATGGCCGTTGAAGACGAAGCATGCA
ACGTGCGTAAATGCGCGGCTACCGTTATTTTTTTTTTAGTTTTCGTACCA
TCATTACATGGCCTTGTCAAATAGCTGGACCGTCCCTATGGTGTCATGTA
CCCGCACCGATAGGTACGGCTGTCCTTTCTATTACAGTCGCGACCGCTCT
TCCTTTTAGTCGTGAACTCCCTCTCTACGTGGCAGTTGAAAGGACAAAGT
GTCGAGAGCATGACGCACGTATGCATGATGGCCTGCACATAATTTCCAAA
CACCAACCATCTACAAGCACAGCATTTGGAACTTACCTGCACCTGTGTCT
GGTTCGCTCTGGACCCAATTTGATGCAGATGAACTGCAGAGGGGCATGTG
TACTTTCCTACAGGCTGTTGCGGAGTTTGAGCTAGGTTCGGGGCTCTTGC
CTTGATGGATGTGCTGGATGAGGAAACCTGTAGCTTTCACCAACGAGTGC
TTTTTTCAAGGCAGCACAATATCTCGCGTTGTTGAATTTATTGTAAGTAG
AGTATAATGGAATAATTAATAAAGACTACCCATTCGAGATATATTAGTTG
CGCTAGAGCGAACAGCCAACAACTACAAGTACGCTTCCATATATGGGTAC
AACTTGTCCTCGAAGATTTCAGATGGCATACCGGCTAACCCCGAATCTCG
AGTCCTCTCAACGTCCTCCCGTCATAGCCGCATTATGACGCAATACGTTG
TGCCCAGCCACATCGCAAAACTTGCTCTAATTTTTTTTTGTCTGACCCGC
CCTTGTCGGGTTGCTTGTGTCTTTGTCTGTCCCAGGCGGAGGAGCCCAAT
GTCGATGATGATGTTGAGGCGGACCTGTCTTCCGTCAGGAACGTCTCCGC
AGGCTCGGATCCGTCGGCCAGAGCGTCGAAGAGTGTTGGTAGGCAGTCGA
CGGGGGCTGCCCCGCAGGGTTCGTCTTCGCAGACGGTACCTGCCCCGTCC
ACACGTCGCAAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGG
CGGCGGCAGCAGCAGTGCCGCGCCCGCAGCATCCTCCGCCGCAACATCTT
CGCAGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCACACCC
TCGCGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGC
TGCTGATGCTGCCTCCGGCTCCGGTTCTTCTGATCGTGAGATCACGATAA
CGTCCGCCATGACCCCGGCTGAAGCCATGGCGCGCGTTATGGTGGTTCTC
GGCGGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGCATAT
GGAGGAACACGTGAGTAAAATAGGTCTTCCCTGAGAAAATAATCACTTTT
GTTGGACAGATATGTTTTCATTTTGGATGAACGAGTCATTTACAAACATT
AACTTTGGGCATCCAGCACGTGTTCAACAATTGGGTCTTTCCCATAAAGT
GGACGACGATAGAAGAAGGGGTTAACGTTATGGGTCTAACTCAACGTCTG
TCCTCTTGCGTAGACACACCACTCTCATTGTTCCACTATATTTTCCATGA
CGTGGAGGCGTAGCCAGGACTCCTACATATACCTTGATGTGTATTGGAAT
CCTTCCAACCGTCACACACACATGGTCAATCGAGTACTTCCCGTCATGCA
GCAATGGAAAGAGTTGCAGTTTTCATCCTTGACATGAGGCCGAGGGTCTT
GGTCATGAAATATTGCGGCGTGCCGCACTCAACCTGTCGTCTGTTTGATG
TTGTTGGATTCCTACAAAATGTATTCGTCACAGACGGCAATCCACACTCT
CCCTCCTGCCCCGCTTGATGTCCCGCCCGCCGTTGTTTTTCCCACTACAT
CCGTCGCAGGTAAAACTGGTTTTCTCCCCACTTCTCGGCGGCAGCTCGTC
GGTCGTTGCGGGTTCTCCGGGAAGTGCGACCCAGCCTGTCAGGCAGCCAG
GAGGCTCAGTACGTGGCTTCACTGCTGCCATCTTCGTGGTGTGGAGGTTT
GCACTCATCGGGCCCCAGCAGATGGACTACTGTACGGGGTATGGGCGGAC
GGACCCTGACACGAACGTATTCTGTAGGACGTCCTACATGTTCTGGGAGC
CCACCGGTCTACGATACGAGCCCTTCATGAGTGAGTGTTGTGTTTTTTTT
GGGTCATTCGAATAAGTTTTTGTGTGAACTGATTCACTCACAGGTAGAGC
GATTCGTCAAAGTTGCCCTGACCGTAAGGTCTCTAGTCATCGCGGTGGTC
GAATACAACGTTGTGCTTATGCTGCTGAAATATTAG
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Coding sequence (CDS) from alignment at chr_00:8030908..8033943+

>Ec-00_005270.1 ID=Ec-00_005270.1|Name=Ec-00_005270.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=750bp|location=Sequence derived from alignment at chr_00:8030908..8033943+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCAACCGGCACTACCACAGTCATGCTGGCGGGCTGGATCGCGAGGA
CAGGGGGGGGGTAACCCGCTTCTCCCGCTCCAAGTCTAAGGGAAAGGGGA
AGAAGCATGCTTCGCCACCGCCGCAGGCTCAAGCGGAGGAGCCCAATGTC
GATGATGATGTTGAGGCGGACCTGTCTTCCGTCAGGAACGTCTCCGCAGG
CTCGGATCCGTCGGCCAGAGCGTCGAAGAGTGTTGGTAGGCAGTCGACGG
GGGCTGCCCCGCAGGGTTCGTCTTCGCAGACGGTACCTGCCCCGTCCACA
CGTCGCAAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGG
CGGCAGCAGCAGTGCCGCGCCCGCAGCATCCTCCGCCGCAACATCTTCGC
AGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCACACCCTCG
CGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGC
TGATGCTGCCTCCGGCTCCGGTTCTTCTGATCGTGAGATCACGATAACGT
CCGCCATGACCCCGGCTGAAGCCATGGCGCGCGTTATGGTGGTTCTCGGC
GGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGCATATGGA
GGAACACGTAGAGCGATTCGTCAAAGTTGCCCTGACCGTAAGGTCTCTAG
TCATCGCGGTGGTCGAATACAACGTTGTGCTTATGCTGCTGAAATATTAG
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Synonyms
The feature 'Ec-00_005270.1' has the following synonyms
Synonym
Esi0419_0007
Esi_0419_0007