Ec-00_005230.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005230.1
Unique NameEc-00_005230.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length317
Homology
BLAST of Ec-00_005230.1 vs. uniprot
Match: D8LMQ3_ECTSI (Nitroreductase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ3_ECTSI)

HSP 1 Score: 615 bits (1587), Expect = 5.960e-216
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 1
Query:   79 MFSRVVRPQEALLGRCIRKHGVAESLRCSAAMFSVRSSSPRLRQGEDANLQEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGVDPVVP 1026
            MFSRVVRPQEALLGRCIRKHGVAESLRCSAAMFSVRSSSPRLRQGEDANLQEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGVDPVVP
Sbjct:    1 MFSRVVRPQEALLGRCIRKHGVAESLRCSAAMFSVRSSSPRLRQGEDANLQEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGVDPVVP 316          
BLAST of Ec-00_005230.1 vs. uniprot
Match: A0A835Z3C4_9STRA (Putative nitroreductase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C4_9STRA)

HSP 1 Score: 219 bits (557), Expect = 6.410e-63
Identity = 111/234 (47.44%), Postives = 148/234 (63.25%), Query Frame = 1
Query:  310 RTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGV 1011
            R AA  F  + V    + +++A+T   P+SFN QPW+ ++VRD   +E L+ AM+G N  KV AAP+TAVF ADL+P++R+ RM+E  R+AG PE  + +    + LF GEG    A+R  VT   SP++P P V S EAWS+K+  LA QTY+L+ TAHGL TAPMEGFD RRV AALD+PDRYG+ + V TGY  P            A  WR+ P+E+VF   FG  +  V
Sbjct:    3 RHAAKRFLPDAVPEDIINDVLAMTIRTPTSFNAQPWACIIVRDEEQKEALAQAMVGPNIMKVRAAPLTAVFLADLQPTRRVPRMMEEERRAGTPEERVARLPAMIGLFGGEGAAAEALRRGVTAALSPLKPMPSVTSTEAWSYKHAGLAAQTYLLAATAHGLATAPMEGFDGRRVCAALDVPDRYGVAVAVATGYEDPQHAPS-------AASWRFAPEEMVFLDRFGAPVPDV 229          
BLAST of Ec-00_005230.1 vs. uniprot
Match: A0A484DVA5_BRELC (Nitroreductase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVA5_BRELC)

HSP 1 Score: 206 bits (524), Expect = 1.060e-57
Identity = 109/240 (45.42%), Postives = 150/240 (62.50%), Query Frame = 1
Query:  277 GLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPS-KPEGQGGGGGVARRWRYPPQEVVFDGTFG 993
            G  A +D +  R A  +F    V    L+EI+ LT  AP+SFN+QP++ ++VR    R++L+ AM+GGNA+KV+ APV AVF ADLEP+KR+ R+ +L   +G P   ++     V LFSGEG++ + +R  ++T  SP+QPAP   S EAWSFK T+ A  T++ +   HGL T PMEGFD  RVR ALDIPDRY +P+++  GY  PS KP+            R  P E+ FDG FG
Sbjct:   26 GSTALKDAIEERYACKAFLPCHVSDETLKEILKLTLRAPTSFNVQPYACILVRQEKDRKKLAEAMMGGNARKVIEAPVIAVFAADLEPTKRVPRLQKLAYDSGAPADFVSNMPHVVRLFSGEGMISSMLRKIISTAVSPLQPAPSDVSTEAWSFKQTSFAAATFLYAAQVHGLATCPMEGFDIIRVRNALDIPDRYSVPVVIALGYADPSAKPK--------KLSERLDPTEMFFDGKFG 257          
BLAST of Ec-00_005230.1 vs. uniprot
Match: W2YM79_PHYPR (Nitroreductase domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=W2YM79_PHYPR)

HSP 1 Score: 198 bits (504), Expect = 6.880e-55
Identity = 108/232 (46.55%), Postives = 140/232 (60.34%), Query Frame = 1
Query:  301 VTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAP-SKPEGQGGGGGVARRWRYPPQEVVFDGTFG 993
            +  R A  +F    V    L+EI+ LTQ AP+ FN+QP++ V+VR+   RE+L+ AM+  N +KV  APV AVF ADLEPSKR+ R+  L    G P   +      V LFSGEGVV + +R A+ T  SP+ PAP   S EAW+FK TA A  T++ +   HGL T PMEGFD  RVR ALDIPDRYG+P+++  G+  P +KPE            R  P E+ FDG FG
Sbjct:   30 IEERYACKAFLPTPVPNETLKEILRLTQRAPTGFNVQPYACVLVREQKDREKLAEAMMDSNIRKVKEAPVVAVFAADLEPSKRVPRLQHLMHDNGAPADFVANMPHVVRLFSGEGVVASTLRAAIATAVSPLMPAPSNVSTEAWAFKQTAFAAATFLYAAQTHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHANPDAKPEKPSA--------RLDPTEIFFDGKFG 253          
BLAST of Ec-00_005230.1 vs. uniprot
Match: H3GH55_PHYRM (Nitroreductase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GH55_PHYRM)

HSP 1 Score: 199 bits (505), Expect = 8.470e-55
Identity = 122/284 (42.96%), Postives = 159/284 (55.99%), Query Frame = 1
Query:  190 SSPRLRQGEDANLQEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALT---------QSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPS-KPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGV 1011
            SSPRL +   A L   A     + S + + L A    +  R A  +F  + V    L+EI+ LT         Q AP+ FN QP++ V+VR+   RE+L+ AM+  NA+KV  APV AVF AD EPSKR+ R+ +L    G P   +      V LFSGEGVV + +R A+ T  SP+QPAP   S EAW+FK T  A  T++ +   HGL T PMEGFD  RVR ALDIPDRYG+P+++  G+P P+ KPE            R  P EV FDG FG    G+
Sbjct:    5 SSPRLLRTATAGLLRPAVTQTRALSSAQKTLGA---AIEERYACKAFLPDAVPDKTLKEILKLTLVLTLLLLAQRAPTGFNTQPYACVLVREQKDREKLAEAMMDSNARKVTEAPVVAVFAADCEPSKRVLRLQKLAHDNGAPADFVGNMPHVVRLFSGEGVVASGLRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAATFLYAAQVHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHPNPAAKPE--------KPSVRLDPTEVFFDGKFGQSSEGI 277          
BLAST of Ec-00_005230.1 vs. uniprot
Match: A0A425CDF4_9STRA (Nitroreductase domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CDF4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 9.820e-54
Identity = 108/229 (47.16%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  310 RTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPS-KPEGQGGGGGVARRWRYPPQEVVFDGTFG 993
            R A  SF  + V    L EI+ LT  AP+ FN QP++ V+VR+   RE+L+ AM+  NA+KV  APV AVF AD EPSKR+ R+ +L    G P   ++     V LFSGEG+V + +R A+ T+ SP+ P P   S EAW+FK T  A   ++ +   HGL T PMEGFD  RVR ALDIPDRYG+P+I+  G+P PS KPE            R  P EV FDG FG
Sbjct:   45 RYACKSFLSDAVPDKTLEEILKLTLRAPTGFNTQPYACVLVREQKDREKLAEAMMDSNARKVKEAPVVAVFAADCEPSKRLPRLQKLAYDNGAPVDVVSNMPHVVRLFSGEGMVASGLRAAIATVLSPLMPVPSNVSTEAWAFKQTTFAAAAFLYAAQVHGLATCPMEGFDQIRVRNALDIPDRYGVPVIIALGHPNPSAKPEKPSA--------RLDPTEVFFDGKFG 265          
BLAST of Ec-00_005230.1 vs. uniprot
Match: W4GD81_9STRA (Nitroreductase domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD81_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.270e-53
Identity = 103/240 (42.92%), Postives = 141/240 (58.75%), Query Frame = 1
Query:  283 KAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGM 1002
            +AFR +   R +   +  + +    L++IM  TQ APS FN+QP++ V+V+D A R  LS AMLG N +KV  AP+ AVF +DLEPSKR+  + E+ R AG   A+I +  L +  F GEG +  A+RN ++T  +P QP P      AWS+K+T LAV  YIL+  +HG+    MEGFD   VR ALDIPDRY +P++V +GYP    P         A   R  P +V F G FG  +
Sbjct:    4 QAFRSLARQRRSVYKYQSKAIPNDILKDIMLTTQRAPSGFNLQPYACVLVQDAADRNTLSAAMLGDNVRKVKEAPLIAVFASDLEPSKRVPAIQEMMRSAGQSTADIQQLPLKLRFFGGEGHLAGAIRNGLSTALTPFQPVPTYVPTIAWSYKSTMLAVSQYILAAESHGIGCCVMEGFDETWVRHALDIPDRYSVPVVVASGYPIEVDPS-------PALSPRLAPSQVFFGGKFGAAV 236          
BLAST of Ec-00_005230.1 vs. uniprot
Match: A0A2P4YJH6_9STRA (Nitroreductase family n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJH6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.950e-53
Identity = 108/244 (44.26%), Postives = 143/244 (58.61%), Query Frame = 1
Query:  265 LSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPS-KPEGQGGGGGVARRWRYPPQEVVFDGTFG 993
            LS    K+    +  R A  +F  + V    L+EI+ LT  AP+ FN  P++ V+VR+   RE+L+ AM+  NA+KV  APV  VF ADLEPSKR+ R+ +L    G P   ++     V LFSGEG V + +R A+ T+ SP+ P+P   S EAWSFK T  A  T++ +   HGL T PMEGFD  RVR ALDIPDRYG+P+++  G+  P+ KPE            R  P EV FDG FG
Sbjct:   20 LSNSAQKSLGAAIEERYACKAFLPDPVPDETLKEILQLTLRAPTGFNTMPYACVLVREQKDREKLAEAMMDSNARKVKEAPVVVVFAADLEPSKRVPRLQKLAHDNGAPADFVSNMPHVVRLFSGEGAVASGLRAALATVVSPLLPSPSNVSTEAWSFKQTTFAAATFLYAAQVHGLATCPMEGFDQVRVRNALDIPDRYGVPVVIALGHANPAAKPE--------KPSVRLDPTEVFFDGKFG 255          
BLAST of Ec-00_005230.1 vs. uniprot
Match: A0A3R7NF45_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NF45_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.890e-53
Identity = 110/252 (43.65%), Postives = 140/252 (55.56%), Query Frame = 1
Query:  268 SPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYP----APSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGV 1011
            S    K     +  R A  +F  + V    L+EI+ LT  AP+ FN QP++ VVVR  A RE+L+ AM+  N +KV  APV  VF AD EP+KR+ R+ +L    G     +      V LFSGEGV  + +R A+ T  SP+QPAP   S EAW+FK T  A  T + +   HG+ T PMEGFD  RVR ALDIPDRYGIP+++  GYP    AP+KP             R  P EV FDG FG    G+
Sbjct:   23 SSSAQKKLGAAIQDRYACKAFLPDPVPEQTLQEILKLTLRAPTGFNTQPYACVVVRKQADREKLAEAMMASNVRKVKEAPVVVVFAADCEPTKRVPRLQKLAADNGASTDLVNNLPHVVRLFSGEGVAASGIRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAATLLYAAQEHGVATCPMEGFDQIRVRNALDIPDRYGIPVVIALGYPNPATAPTKPS-----------VRLQPTEVFFDGKFGQSSEGI 263          
BLAST of Ec-00_005230.1 vs. uniprot
Match: A0A6A3XAN9_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XAN9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.470e-53
Identity = 119/282 (42.20%), Postives = 157/282 (55.67%), Query Frame = 1
Query:  151 SLRCSAAMFSVRSSSPRLRQGEDANLQEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMALTQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPS-KPEGQGGGGGVARRWRYPPQEVVFDGTFG 993
            +LRC   + S  +S   L QG          +S  S  LS    K     +  R A  +F  + V    L+EI+ LT  AP+ FN QP++ V+VR+   RE+L+ AML  NA+KV  APV AVF AD EPSKR+ R+ +L    G P   ++     V LFSGEGVV   +R A+ T  SP+QPAP   S EAW++K    A  T++ +   +GL T PMEGFD  RVR ALDIPDRYG+P+++  G+P P+ KP+            R  P EV FDG FG
Sbjct:    2 TLRCPRVLSSATTS--LLHQG--------GPVSARSRCLS-SAQKKLGAAIEERYACKAFLPDAVPDKTLQEILKLTLRAPTGFNTQPYACVLVREQKDREKLAEAMLDSNARKVKEAPVVAVFAADCEPSKRVPRLQKLAHDNGAPVDFVSNLPHFVRLFSGEGVVARGLRAAIATAVSPLQPAPSNVSTEAWAYKQATFAAATFLYAAQEYGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHPNPAAKPKKPSA--------RLDPTEVFFDGKFG 264          
The following BLAST results are available for this feature:
BLAST of Ec-00_005230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ3_ECTSI5.960e-216100.00Nitroreductase domain-containing protein n=2 Tax=E... [more]
A0A835Z3C4_9STRA6.410e-6347.44Putative nitroreductase family n=1 Tax=Tribonema m... [more]
A0A484DVA5_BRELC1.060e-5745.42Nitroreductase domain-containing protein n=1 Tax=B... [more]
W2YM79_PHYPR6.880e-5546.55Nitroreductase domain-containing protein n=5 Tax=P... [more]
H3GH55_PHYRM8.470e-5542.96Nitroreductase domain-containing protein n=2 Tax=P... [more]
A0A425CDF4_9STRA9.820e-5447.16Nitroreductase domain-containing protein n=2 Tax=P... [more]
W4GD81_9STRA1.270e-5342.92Nitroreductase domain-containing protein n=3 Tax=A... [more]
A0A2P4YJH6_9STRA1.950e-5344.26Nitroreductase family n=2 Tax=Phytophthora palmivo... [more]
A0A3R7NF45_9STRA4.890e-5343.65Nitroreductase domain-containing protein n=3 Tax=P... [more]
A0A6A3XAN9_9STRA9.470e-5342.20Nitroreductase domain-containing protein n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7960647..7966653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score618.6
Seed ortholog evalue1.6e-174
Seed eggNOG ortholog2880.D8LMQ3
Length2144
Hectar predicted targeting categorymitochondrion
Gene idEc-00_005230.1
EggNOG free text desc.Nitroreductase family
EggNOG OGs2RZ0D@2759,COG0778@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005230Ec-00_005230Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7960512..7966699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005230.1Ec-00_005230.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7961761..7966574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005230.1.7Ec-00_005230.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7960647..7961959 -
Ec-00_005230.1.6Ec-00_005230.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7962380..7962498 -
Ec-00_005230.1.5Ec-00_005230.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7963058..7963159 -
Ec-00_005230.1.4Ec-00_005230.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7963757..7963830 -
Ec-00_005230.1.3Ec-00_005230.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7964617..7964765 -
Ec-00_005230.1.2Ec-00_005230.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7965372..7965525 -
Ec-00_005230.1.1Ec-00_005230.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7966421..7966653 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0052303UTR:Ec-00_005230.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 7960647..7961760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005230.1CDS:Ec-00_005230.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7961761..7961959 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0052305UTR:Ec-00_005230.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 7966575..7966653 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005230.1 ID=Ec-00_005230.1|Name=Ec-00_005230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=317bp
MFSRVVRPQEALLGRCIRKHGVAESLRCSAAMFSVRSSSPRLRQGEDANL
QEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMAL
TQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCA
DLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVT
TIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDAR
RVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVF
DGTFGVGMTGVDPVVP*
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spliced messenger RNA

>Ec-00_005230.1 ID=Ec-00_005230.1|Name=Ec-00_005230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2144bp|location=Sequence derived from alignment at chr_00:7960647..7966653- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGACAGACAGACAGAGAGAGAAGAGCTAGGACTACTCGAGATATATATAT
AGAGATAAAGAGCGACTCCGCCGAAGCCCATGTTTTCGCGAGTAGTGCGG
CCGCAGGAAGCACTTCTCGGCAGGTGCATCCGAAAGCATGGCGTTGCAGA
GTCCCTGCGATGCTCTGCGGCAATGTTTTCCGTGCGCTCGTCTTCACCAC
GTCTACGACAAGGAGAAGACGCGAACTTGCAAGAAGACGCCGACCTCTCT
GGCAACTCCTCATCGTTGTCGCCTGAAGGGCTGAAAGCTTTCCGAGATGT
GGTCACCTCTCGCACGGCGGCTATTAGCTTCAGCGATGAGGAGGTCGACC
CCCCCGCCCTACGCGAGATCATGGCGCTTACGCAGAGCGCCCCCTCGTCG
TTCAACATCCAACCCTGGAGCGTGGTAGTGGTAAGGGATACCGCCGCAAG
AGAGCGGCTGTCGACGGCGATGCTAGGCGGCAACGCGAAGAAAGTCCTGG
CGGCTCCTGTCACGGCCGTCTTCTGCGCCGACTTGGAGCCGTCGAAGCGC
ATCAACCGGATGGTGGAGCTGAACCGAAAGGCGGGCATGCCCGAGGCCGA
GATCACCAAGTTTTGCCTGGCGGTTAACCTGTTCAGCGGGGAGGGAGTCG
TGGGCAACGCCGTGCGGAACGCCGTCACCACTATCGCCTCTCCTATGCAG
CCAGCGCCGGAGGTCGCGTCGGCGGAGGCGTGGTCGTTTAAGAACACCGC
CCTTGCCGTCCAGACGTACATCCTCTCCTGTACGGCGCACGGGCTGGATA
CCGCCCCCATGGAAGGCTTCGACGCCAGAAGAGTGAGGGCAGCGCTTGAC
ATCCCCGACCGATACGGTATTCCCATCATAGTCCCCACGGGTTATCCCGC
ACCGTCAAAGCCGGAAGGGCAGGGTGGCGGTGGTGGTGTGGCGAGGCGGT
GGCGATATCCACCGCAAGAGGTGGTGTTTGACGGAACCTTTGGCGTGGGC
ATGACAGGGGTGGACCCGGTTGTGCCATAGAAGCTACGGTACTGTAGTGC
TTGGCAAGAAAGTACATACCAGGCAGGTTTTTATTTATTCCATGATGCTG
TGTCTCGAGTGCACCAAGTTCCAGAGGCCAGATCCACATCTCATCCAATG
GGGAGGTATTTTGTGGCATGCACAACAAGCAGGCTTTCGAGTTGGAGAGC
TCAAGAGCGCGAGCGAGAAAAAATGAAATCTGGCGCGCGGGTTTCTAATT
GGCCAAAGGTCTAACCCTTGCGGCGAAATAGAATACCGAGGACACCGCAT
TCCATGGTATCCTTGGATGACGGGTGGTGTCATCCACGGTTGTTCGTGGT
GTATGGCATCTTACTGTAGTCCCAGAAGGTTTTTTGCCGTACATGTAGAG
AGAGTACCTGTACCCACAGAGGGGTGGAATCGTGCGTGCCGCGGATTCCG
ACGGAAGCGGTGCAGGACAGCAGAGAGGGAGGGCTTTGGCCGTTTTTGCA
GCGTCTACCTGGACTTGAAAAGGGTGCACAGCCCCTCGGTTTACGAGAAG
GCTGAACAATCTACCGCAGTCTGGGTTGAACGAACGGATTGCAGGTTTTA
CAACTCGCTCGTTCACGAGATGGTTTTTCAGATCTCGCGCTCACTTTCCG
CCACGGTGCGCATTTGTGTTGATTGATTGCTCAATCATCAACACCGAAAA
CAACCATCTCAACGATGGAACTCGCGTAGTAAATGATAGGTGGAATCGAC
GCGGGAATGCATGCAGCGGAAAATTGTTGTCAAAACAAGCGCTGCTTGCT
GCAGGTTGTTGCATCAAGGCTTTAAATCATCTACCCTGGAGGTTTGCCCC
ACCAAGAGGCTGGATGGACTCACTCCTGGTATTGGCCGGCCGGGCTTACA
ACCGCCGGTTTGTGGAGAACGCGCACGTCGGGGGCGTGTGCATGAGACAG
ACAGACGATGTGGATGTGGATGGCATGCAAACAGGCGGGGTGATGTCGGG
AAAATAATCTTTTTTTTCGTCAGATGTAAACCCCGACGGAGGGAAATCAC
AAGAAGACAAGCTACTATTATCGTTCCGTTTGAAACACACACGCATTGCA
CATCGGTTTACTCCACGTGGGCGGTGATGGATTTCTTGTGTCTA
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protein sequence of Ec-00_005230.1

>Ec-00_005230.1 ID=Ec-00_005230.1|Name=Ec-00_005230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=317bp
MFSRVVRPQEALLGRCIRKHGVAESLRCSAAMFSVRSSSPRLRQGEDANL
QEDADLSGNSSSLSPEGLKAFRDVVTSRTAAISFSDEEVDPPALREIMAL
TQSAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCA
DLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVT
TIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDAR
RVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVF
DGTFGVGMTGVDPVVP*
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mRNA from alignment at chr_00:7960647..7966653-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005230.1 ID=Ec-00_005230.1|Name=Ec-00_005230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6007bp|location=Sequence derived from alignment at chr_00:7960647..7966653- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGACAGACAGACAGAGAGAGAAGAGCTAGGACTACTCGAGATATATATAT AGAGATAAAGAGCGACTCCGCCGAAGCCCATGTTTTCGCGAGTAGTGCGG CCGCAGGAAGCACTTCTCGGCAGGTGCATCCGAAAGCATGGCGTTGCAGA GTCCCTGCGATGCTCTGCGGCAATGTTTTCCGTGCGCTCGTCTTCACCAC GTCTACGACAAGGAGAAGACGCGAACTTGCAAGGTGGGCATTTAATCCTC CGCCGGTATGCTGCTCTGGTCTGAAAGCTGAAAGCGTGTAGTGTAGTATT AATAGGATCGATGGCATCGGAGTGCAACCTCAAGCATCAAGAGGTTATGG ATGTTCCATGCTTGCAGAGACAGAGAGAAGTGCGAGGTCGTTGTCCAACA AATACACACATCTTGGGGTGGACGGCACCTAGCGGCTGACTACTAGTCAG TTCTCGCTCTCAGCCGTCACCTACCGAGGCATGTGCAGCTGTCACAACAA GGAGTTGCCGAAGAACCTCGAGAATTACCAGCCACCCCCCAGACGAAGCT GTAATCCGTTGCAAGGAAGTAAGCACATTCACCCTACAACAGGACGCAGT GCACTCTCCATGCAACTCGCCGAATACCTCACGACGCTTCGCGCTTGGTG ATGTGAAAGCCTGGTCCGGTGAGGACCCGGCGTGCTCCGTGCCGGCTTTG TAGGGATGCGAGGTCAATGATCAAACGACTACGGCATGCACGACTATGAG TACACCCCCCGGCCCCTCAGAAATTAAGGCGTACTGCTGTACTCTGTGCA CGCCATTTGTGTCTTCCTTCGCAATGCTCAGCGCCGAGGCCTCGGCAAGA GATAGCCTTGGCGTAGTCTGCTGCTGAAGTCTACAAATCAACCCTGTGCT TCGACCTCACCTCACTCTTTGCTTGTACCTGCGTGTGCTTCTGGTTCTCA GAGAGCAGCCTCAACCTGCCCAAACATGAACATTATTTTTCCTTCGCACT CTGCGCACCCACACGCCCAAAAAGCCTACAATAGTTGGCTCACCCTACCG TACGGATGTTGTTGCCTCATGGGGTGCCGCCGATGTTTGGTTTGTTTCTA CTACACTCCCCTGCGACCGTGCTCGCAGAAGACGCCGACCTCTCTGGCAA CTCCTCATCGTTGTCGCCTGAAGGGCTGAAAGCTTTCCGAGATGTGGTCA CCTCTCGCACGGCGGCTATTAGCTTCAGCGATGAGGAGGTCGACCCCCCC GCCCTACGCGAGATCATGGCGCTTACGCAGAGGTGTGATAGAAGATACAT ATATGCGGTACATGTCATGTGCGCGTGTGTGTCCCATTTGTCGTCCAATT TTTTTAGCGTCACTTTCGGTGAACGCTTTTTTTCGGGCGCACTACGTAGT CGTTGGTCCACACTTGTTTTGAGCACAACTTGAGAACAAACTTCCCAGCT GTTGCACCGACATTCGAACTCACGTGCCCAGCTTACCGAAGATTGCGAGG AAGTAAACTGAACCATTGGGGTGAGTCTCACGAGTATGCTACTGCAAACG TCTTGGTCAGAGGGATCTTGAAGGTGATTTGGGTACAATTTTGACGCTCA TCCATCTATCCACATCAATTCCGGCGACATGGGACGGAGAAATTACTACA GTACGTACTACTGTACGACTCCACCTTACCACACGTCGACACAACCGCTC TTTGTTTCGGCCTAAATCTCGCCATGACTACATGACAACACTCATTCTGG CAGTAAACAAACTTCCGTTTTTCTTTTTGGACCGATAGAGTGTCACCCAA GCCTGACGTCCACATCCCTCTTACTTTTGCTTTTGACATTCATGATGGGA TCGGGGTGCGGTACCTCCCCCCCCCCCCCGAACTCCAGCGCCCCCTCGTC GTTCAACATCCAACCCTGGAGCGTGGTAGTGGTAAGGGATACCGCCGCAA GAGAGCGGCTGTCGACGGCGATGCTAGGCGGCAACGCGAAGAAAGTCCTG GCGGCTCCTGTCACGGCCGTCTTCTGCGCCGACTTGGGTGAGCGTATGTT GTTGTTGTCGTTGTCTATCTTTTCGGTCTCTGCTCGCAAGCGGTGCCTTC TGACATCCGTGCCGTCCAACATGACGCGGAACGCCGTCGCAGGGGGAGCG TTTGCATTGGGACTATATGTTGGTGTTGTTGCTCGCTTGCTGTCCAACCC CGAGTGCTGTCTGTTCTAGATGGAGGAGTAGCGCAGAGTGGTATTCGACG AACTGGTCGGTTTCCTATTCAGTCGAAGACAACGGTATCGAGACCGCCAA CCTGTCGGATGGGGGTGGGACGATGTCTCTACCGCATCATACGTCCGGTG CCACCTCGTTGCATGCTTGGCTTCCACCCGGCACAGCTCCCGGTTCCGCT TGTGGCTTGAACCCAAGCAAGAGCCTTGCTCGGTGCCTCTCTCTCTATCG GTAGCGTGTACGGTGGCACCGTTGAGGGTGTGCTTTTAAGCGAAAGGCGG CCCAATTGGGGGCTGCCGGTGTTGACGCCCGTCACGCAAGCCCGGGCAGC GGAAAAAGTGTGTAATTTTAGCGGTCCGCTTCGACACGAAGCAAGGTACC GAAACACGGGGTCGGTATTGACCGCATCACCCCCACCTTGCCTGTACGAG CGGCAGCTTTGCGTTGGCAAAAGAGTTGCCACCACAATATTCATCCTACT ACTGGAGTAGAAAAGTACAAATTTTCGCACTGCCAGGCGTCACTTGTTCA TTTAGATAAATCGACACAACCACTCCACTCATGCGCACGCCGTTCCGGTG GCGCCTGTTCAAACCCGTCGCAGAGCCGTCGAAGCGCATCAACCGGATGG TGGAGCTGAACCGAAAGGCGGGCATGCCCGAGGCCGAGATCACCAAGGTT TGGGCGCACTCGTCGACAAATGCGGTCCGGCTCTTCCATGCTCACATTCG CACTGTGCAGTTTCAATTATGCTGTCCGCGCGATGATATCCTCGCCGGGT ACATCACATGTGGAACTAGAACAGAACTGTTGCTGTGTTCAAGTTGCTTC CAACTTGCCGCAGAACAGTCTACATGACCGCTTACCGTTCGCACACCTCA GTTTGATAGTAGGTACCCGAAGAGGCGGTTCGAATTGCTAGTTCGAACTT CGAGCTACATTTCCACCCGCGCCATGACTCTCAAAAAACAACTTACCCCA ACTATCTCGTTGAGGTTTGTTGATCGGTAAGACACGGCGCGCATCACCTT CTACCCTTCCCGCCTGTCAAAGTGCCGTTCATGATGGGTTGCGCTTTTCT TACCGCCCGATGGTTGGCGGTCCAAAGCTGTCTTATGTTTTGTGCCCGTC TTTTCAGACAACATTCCCAGCAAAGAGGCACTGCTGCTGTTGTTGTCGTC GTCTTTGTTGGAGGTGCTCATGTTTCGTTTGCCGCTGACGCAGCTGTTAC CATCGCACGAAACTCATTCTTGTATACTTGCCCCGTTTTTCTAGTTTTGC CTGGCGGTTAACCTGTTCAGCGGGGAGGGAGTCGTGGGCAACGCCGTGCG GAACGCCGTCACCACTATCGCCTCTCCTATGCAGCCAGCGCCGGAGGTGA GCTTAACATACAGCGCAAGCCTTTTCCGGTCGAGCTAGACTCACGAGAAC GAGGCTACTGCATGGAACCCTATGGCCGAACCAATCAACACACCGGAGGG GAGAGAGTGTGATGGACGGGATATGCCGTGACCAGCATCGCCTTTTCGTT TGCCGCAAACGGCACCCGGAGTTTGCGGGAACAAGGGGCTCGCGCACGCG ACGGATCTTTACCTCTGCGATCAGTTCCGCACTCTGGGCTACATACACAC GAAGAGGGCCGTCGCGTTCACAAAATCGCAGGAGGGTGCGTCCAACCGTA TGCCATGACGTGAACGTGGACGGGGCTGGTTATCCAAGGACTAGGACGGT TCTGACTTCTTTCTCTGGATTTACGTCCTCGGTTTCCGATTCGATCCCCT GACAATGCTCAAACCGTCCTACGTTGACTACGTATTTGCGTCTGTTCATT TATGGGTAGAAAATGCCGCCTCTGTCTGTAAAAACCCAGAAAAAAAGCCT GATTTATCCTCCTTGCATGTGTTCGGTCCCCATTCTTGAAACTGCACCAC ACAAGGTCGCGTCGGCGGAGGCGTGGTCGTTTAAGAACACCGCCCTTGCC GTCCAGACGTACATCCTCTCCTGTACGGCGCACGGGCTGGATACCGCCCC CATGGAAGGCTTCGACGCCAGAAGGTGACTGGTCGTACACGCCTGAGTTT TTCTTATATCGATTCTTTCTTTTCCCTCCGTCAATGGCGATCGGTGTGTG CTTCGCCATCTGGCAAAGAGGTTGTTGCTGCTTGGCTGTACTTGGTATTC TCAAAAAAATGTCCGTGGACTTCGGCTTTGTGTCTCGCATTTGTCCCACC CCTTACGATACGGTAAAGCTCTGCTGCGTAGTCAAGATAAGACAGATGCA GACGGATGTTTCTGAAATGGAGCCCCCATGGCTTAGCCCCCGTTAACCCC CCAAATGTTGGTGGTGTCTCTAGTAGGGGTAGGAACGGTGCTCCGTCTCG AAAGGGACGCGTGGTCAATGGTCAAATGACTACGGCAAGCAACAAATGAG TACGCCCCCCTCCCCGCGCTCCTCCCGCCACCTACGCGCTGCAGAGTGAG GGCAGCGCTTGACATCCCCGACCGATACGGTATTCCCATCATAGTCCCCA CGGGTTATCCCGCACCGTCAAAGCCGGAAGGGCAGGGTGGCGGTGGTGGT GTGGCGAGGCGGTGGCGATATCCACCGCAAGAGGTGGTGTTTGACGGAAC CTTTGGCGTGGGCATGACAGGGGTGGACCCGGTTGTGCCATAGAAGCTAC GGTACTGTAGTGCTTGGCAAGAAAGTACATACCAGGCAGGTTTTTATTTA TTCCATGATGCTGTGTCTCGAGTGCACCAAGTTCCAGAGGCCAGATCCAC ATCTCATCCAATGGGGAGGTATTTTGTGGCATGCACAACAAGCAGGCTTT CGAGTTGGAGAGCTCAAGAGCGCGAGCGAGAAAAAATGAAATCTGGCGCG CGGGTTTCTAATTGGCCAAAGGTCTAACCCTTGCGGCGAAATAGAATACC GAGGACACCGCATTCCATGGTATCCTTGGATGACGGGTGGTGTCATCCAC GGTTGTTCGTGGTGTATGGCATCTTACTGTAGTCCCAGAAGGTTTTTTGC CGTACATGTAGAGAGAGTACCTGTACCCACAGAGGGGTGGAATCGTGCGT GCCGCGGATTCCGACGGAAGCGGTGCAGGACAGCAGAGAGGGAGGGCTTT GGCCGTTTTTGCAGCGTCTACCTGGACTTGAAAAGGGTGCACAGCCCCTC GGTTTACGAGAAGGCTGAACAATCTACCGCAGTCTGGGTTGAACGAACGG ATTGCAGGTTTTACAACTCGCTCGTTCACGAGATGGTTTTTCAGATCTCG CGCTCACTTTCCGCCACGGTGCGCATTTGTGTTGATTGATTGCTCAATCA TCAACACCGAAAACAACCATCTCAACGATGGAACTCGCGTAGTAAATGAT AGGTGGAATCGACGCGGGAATGCATGCAGCGGAAAATTGTTGTCAAAACA AGCGCTGCTTGCTGCAGGTTGTTGCATCAAGGCTTTAAATCATCTACCCT GGAGGTTTGCCCCACCAAGAGGCTGGATGGACTCACTCCTGGTATTGGCC GGCCGGGCTTACAACCGCCGGTTTGTGGAGAACGCGCACGTCGGGGGCGT GTGCATGAGACAGACAGACGATGTGGATGTGGATGGCATGCAAACAGGCG GGGTGATGTCGGGAAAATAATCTTTTTTTTCGTCAGATGTAAACCCCGAC GGAGGGAAATCACAAGAAGACAAGCTACTATTATCGTTCCGTTTGAAACA CACACGCATTGCACATCGGTTTACTCCACGTGGGCGGTGATGGATTTCTT GTGTCTA
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Coding sequence (CDS) from alignment at chr_00:7960647..7966653-

>Ec-00_005230.1 ID=Ec-00_005230.1|Name=Ec-00_005230.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=951bp|location=Sequence derived from alignment at chr_00:7960647..7966653- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTTTCGCGAGTAGTGCGGCCGCAGGAAGCACTTCTCGGCAGGTGCAT
CCGAAAGCATGGCGTTGCAGAGTCCCTGCGATGCTCTGCGGCAATGTTTT
CCGTGCGCTCGTCTTCACCACGTCTACGACAAGGAGAAGACGCGAACTTG
CAAGAAGACGCCGACCTCTCTGGCAACTCCTCATCGTTGTCGCCTGAAGG
GCTGAAAGCTTTCCGAGATGTGGTCACCTCTCGCACGGCGGCTATTAGCT
TCAGCGATGAGGAGGTCGACCCCCCCGCCCTACGCGAGATCATGGCGCTT
ACGCAGAGCGCCCCCTCGTCGTTCAACATCCAACCCTGGAGCGTGGTAGT
GGTAAGGGATACCGCCGCAAGAGAGCGGCTGTCGACGGCGATGCTAGGCG
GCAACGCGAAGAAAGTCCTGGCGGCTCCTGTCACGGCCGTCTTCTGCGCC
GACTTGGAGCCGTCGAAGCGCATCAACCGGATGGTGGAGCTGAACCGAAA
GGCGGGCATGCCCGAGGCCGAGATCACCAAGTTTTGCCTGGCGGTTAACC
TGTTCAGCGGGGAGGGAGTCGTGGGCAACGCCGTGCGGAACGCCGTCACC
ACTATCGCCTCTCCTATGCAGCCAGCGCCGGAGGTCGCGTCGGCGGAGGC
GTGGTCGTTTAAGAACACCGCCCTTGCCGTCCAGACGTACATCCTCTCCT
GTACGGCGCACGGGCTGGATACCGCCCCCATGGAAGGCTTCGACGCCAGA
AGAGTGAGGGCAGCGCTTGACATCCCCGACCGATACGGTATTCCCATCAT
AGTCCCCACGGGTTATCCCGCACCGTCAAAGCCGGAAGGGCAGGGTGGCG
GTGGTGGTGTGGCGAGGCGGTGGCGATATCCACCGCAAGAGGTGGTGTTT
GACGGAACCTTTGGCGTGGGCATGACAGGGGTGGACCCGGTTGTGCCATA
G
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Synonyms
The feature 'Ec-00_005230.1' has the following synonyms
Synonym
Esi0409_0021
Esi_0409_0021