Ec-00_005090.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005090.1
Unique NameEc-00_005090.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length226
Homology
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BLAST of Ec-00_005090.1 vs. uniprot
Match: D7G0J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J3_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 1.420e-163
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 
Query:    1 MARGEWSFWRSTRLQRSRVQDTTVLRTRFWACACSTPLPRVRSSTLTTLKTFPAGSTRGTRTVGANTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQVVFETILGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPDAIE 675
            MARGEWSFWRSTRLQRSRVQDTTVLRTRFWACACSTPLPRVRSSTLTTLKTFPAGSTRGTRTVGANTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQVVFETILGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPDAIE
Sbjct:    1 MARGEWSFWRSTRLQRSRVQDTTVLRTRFWACACSTPLPRVRSSTLTTLKTFPAGSTRGTRTVGANTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQVVFETILGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPDAIE 225
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BLAST of Ec-00_005090.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.520e-82
Identity = 133/177 (75.14%), Postives = 136/177 (76.84%), Query Frame = 1 
Query:  238 HHAIPVVASASCKARNPGQQQVVFET----------------------------------ILGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPD 666
            HHAIPVVA ASCKARNPGQQQ+VFET                                  IL VWNDRFAPTI PIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDA TSE+GVVQCFDLKHNLKRLRTRDISKRGVKI A ALPL CDSFPQLF+WYDCKPNETYRTLLNPD
Sbjct:  141 HHAIPVVAFASCKARNPGQQQLVFETVRHCIIVSLVEVPGKLCLQLIWLMITRKVEASRGILEVWNDRFAPTIDPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDAMTSEYGVVQCFDLKHNLKRLRTRDISKRGVKISASALPLNCDSFPQLFRWYDCKPNETYRTLLNPD 317
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BLAST of Ec-00_005090.1 vs. uniprot
Match: D7FQM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM1_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.850e-41
Identity = 76/145 (52.41%), Postives = 100/145 (68.97%), Query Frame = 1 
Query:  238 HHAIPVVASASCKARNPGQQQVVFETILGVWNDR--FAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPD 666
            +HA+P++A A C   NP QQQ+   TIL VWN    F  T+GPIVLV SDGD VRR++L++ TS  TS+    F L+D TTS  G++QCFDLKH  KR RT+DISK+GV++ +G L L  D++P+LF+ +D  P  TY  L NPD
Sbjct:  142 YHAVPLLAFAVCNEPNPLQQQLALRTILDVWNSNPAFGNTLGPIVLVCSDGDAVRRKVLHDLTSGGTSDVLNVFKLMDKTTSVEGLMQCFDLKHCAKRYRTKDISKKGVRV-SGGLALNRDTYPELFRVHDGNPEATYDALFNPD 285
The following BLAST results are available for this feature:
BLAST of Ec-00_005090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0J3_ECTSI1.420e-163100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6P9_ECTSI1.520e-8275.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM1_ECTSI1.850e-4152.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7638329..7639351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length678
Hectar predicted targeting categoryother localisation
Gene idEc-00_005090.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005090Ec-00_005090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7638329..7639351 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005090.1.3Ec-00_005090.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7638329..7638691 -
Ec-00_005090.1.2Ec-00_005090.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7638829..7639060 -
Ec-00_005090.1.1Ec-00_005090.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7639269..7639351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005090.1CDS:Ec-00_005090.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7638329..7638691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005090.1Ec-00_005090.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7638329..7639351 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005090.1 ID=Ec-00_005090.1|Name=Ec-00_005090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=226bp
MARGEWSFWRSTRLQRSRVQDTTVLRTRFWACACSTPLPRVRSSTLTTLK
TFPAGSTRGTRTVGANTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQ
VVFETILGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAE
FDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSF
PQLFQWYDCKPNETYRTLLNPDAIE*
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spliced messenger RNA

>Ec-00_005090.1 ID=Ec-00_005090.1|Name=Ec-00_005090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=678bp|location=Sequence derived from alignment at chr_00:7638329..7639351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGAGGAGAGTGGTCATTCTGGAGATCGACGAGATTGCAACGGAG
CCGCGTGCAAGATACTACGGTCTTACGGACGAGATTTTGGGCCTGTGCGT
GCAGCACACCCCTCCCAAGAGTACGAAGTTCGACCTTGACAACCTTGAAG
ACCTTTCCGGCCGGCTCAACGAGGGGCACTCGCACAGTGGGAGCGAACAC
ACCGTCATCTCCGCTTGCGCTATTTGAAAAAAATTCGCACCACGCGATAC
CAGTCGTGGCGTCCGCCAGCTGCAAGGCGCGTAACCCAGGGCAGCAGCAA
GTCGTCTTTGAAACGATACTGGGAGTGTGGAACGATCGGTTCGCTCCCAC
CATCGGCCCCATCGTGCTCGTGGCTTCAGATGGGGACGGCGTGAGGCGTC
GGTTGCTCTACAACTTCACCAGCAGTGTCACGTCCGAGAAATTCGCTGAG
TTCGACCTCCTCGACGCCACGACTAGCGAGCACGGCGTGGTACAGTGCTT
CGATCTGAAGCACAACCTGAAGCGGCTTCGCACGAGGGACATTTCGAAGA
GAGGGGTGAAGATACCGGCGGGCGCACTTCCGCTTTACTGTGACAGCTTT
CCACAGCTATTTCAGTGGTACGACTGCAAACCGAACGAGACATACAGGAC
CTTGCTCAACCCGGACGCCATTGAATAG
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protein sequence of Ec-00_005090.1

>Ec-00_005090.1 ID=Ec-00_005090.1|Name=Ec-00_005090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=226bp
MARGEWSFWRSTRLQRSRVQDTTVLRTRFWACACSTPLPRVRSSTLTTLK
TFPAGSTRGTRTVGANTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQ
VVFETILGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAE
FDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSF
PQLFQWYDCKPNETYRTLLNPDAIE*
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mRNA from alignment at chr_00:7638329..7639351-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005090.1 ID=Ec-00_005090.1|Name=Ec-00_005090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1023bp|location=Sequence derived from alignment at chr_00:7638329..7639351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGAGAGGAGAGTGGTCATTCTGGAGATCGACGAGATTGCAACGGAG
CCGCGTGCAAGATACTACGGTCTTACGGACGAGGTGCGTATTGGGAGCTT
CGTGTTTGTGTTGCGCACGCCATTTTTAAGTCCCACAGGTTGCGAGGCGT
CTCGCGTAGACGTTACCCACCGTTTGCAGTGCAGCTCTGGATTCGTTCCG
TGCTGGCCGAGCAAGTATTTCCATCAGTCAGTCAGATTTTGATTCGTTTC
CCACACCACAAATGGTGATTCCCTACAATGTTTGACATCAGATTTTGGGC
CTGTGCGTGCAGCACACCCCTCCCAAGAGTACGAAGTTCGACCTTGACAA
CCTTGAAGACCTTTCCGGCCGGCTCAACGAGGGGCACTCGCACAGTGGGA
GCGAACACACCGTCATCTCCGCTTGCGCTATTTGAAAAAAATTCGCACCA
CGCGATACCAGTCGTGGCGTCCGCCAGCTGCAAGGCGCGTAACCCAGGGC
AGCAGCAAGTCGTCTTTGAAACGGTAAGACACTGTATCAGTTGGTGATAA
CGCGGAAGGTCGAGGCAAGGTGAGATTCTGTCCATACCCCCCACCCGTCC
ACTCAACCATGATATCTACGTTTTATGGAAAGTCGGTGCCGGCCTCGCAC
GTTGACGCAGATACTGGGAGTGTGGAACGATCGGTTCGCTCCCACCATCG
GCCCCATCGTGCTCGTGGCTTCAGATGGGGACGGCGTGAGGCGTCGGTTG
CTCTACAACTTCACCAGCAGTGTCACGTCCGAGAAATTCGCTGAGTTCGA
CCTCCTCGACGCCACGACTAGCGAGCACGGCGTGGTACAGTGCTTCGATC
TGAAGCACAACCTGAAGCGGCTTCGCACGAGGGACATTTCGAAGAGAGGG
GTGAAGATACCGGCGGGCGCACTTCCGCTTTACTGTGACAGCTTTCCACA
GCTATTTCAGTGGTACGACTGCAAACCGAACGAGACATACAGGACCTTGC
TCAACCCGGACGCCATTGAATAG
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Coding sequence (CDS) from alignment at chr_00:7638329..7639351-

>Ec-00_005090.1 ID=Ec-00_005090.1|Name=Ec-00_005090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=678bp|location=Sequence derived from alignment at chr_00:7638329..7639351- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGAGAGGAGAGTGGTCATTCTGGAGATCGACGAGATTGCAACGGAG
CCGCGTGCAAGATACTACGGTCTTACGGACGAGATTTTGGGCCTGTGCGT
GCAGCACACCCCTCCCAAGAGTACGAAGTTCGACCTTGACAACCTTGAAG
ACCTTTCCGGCCGGCTCAACGAGGGGCACTCGCACAGTGGGAGCGAACAC
ACCGTCATCTCCGCTTGCGCTATTTGAAAAAAATTCGCACCACGCGATAC
CAGTCGTGGCGTCCGCCAGCTGCAAGGCGCGTAACCCAGGGCAGCAGCAA
GTCGTCTTTGAAACGATACTGGGAGTGTGGAACGATCGGTTCGCTCCCAC
CATCGGCCCCATCGTGCTCGTGGCTTCAGATGGGGACGGCGTGAGGCGTC
GGTTGCTCTACAACTTCACCAGCAGTGTCACGTCCGAGAAATTCGCTGAG
TTCGACCTCCTCGACGCCACGACTAGCGAGCACGGCGTGGTACAGTGCTT
CGATCTGAAGCACAACCTGAAGCGGCTTCGCACGAGGGACATTTCGAAGA
GAGGGGTGAAGATACCGGCGGGCGCACTTCCGCTTTACTGTGACAGCTTT
CCACAGCTATTTCAGTGGTACGACTGCAAACCGAACGAGACATACAGGAC
CTTGCTCAACCCGGACGCCATTGAATAG
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Synonyms
The feature 'Ec-00_005090.1' has the following synonyms
Synonym
Esi0405_0007
Esi_0405_0007