Ec-00_005010.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005010.1
Unique NameEc-00_005010.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length183
Homology
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BLAST of Ec-00_005010.1 vs. uniprot
Match: A0A6H5JVG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.450e-35
Identity = 103/137 (75.18%), Postives = 103/137 (75.18%), Query Frame = 1 
Query:  118 APRTKTIRIWETGYRFQFGPGRIASKLLDKNVSDITEQHAVNAFIPYLDNPTNGPGFDDDGNEIDDEEGGNGLXXXXXXXXXXXXXXXXXXXXXXXHGTNHGNVEAGGQSGTGEVADLSERTNLRNTDERGASGSSV 528
            A R     IWETGYRFQFGPGRIASKL DKNVSDITEQ AVNAFIPYLDNPTNGPGFDDDGNE           XXXXXXXXXXXXXXXXXXXXXX GTN GNVEAG Q G  E A  SERTN   TD  GASGS V
Sbjct:   52 AQRFIVATIWETGYRFQFGPGRIASKL-DKNVSDITEQDAVNAFIPYLDNPTNGPGFDDDGNET----------XXXXXXXXXXXXXXXXXXXXXXXGTNRGNVEAGEQRGADEDAVPSERTNKEMTDGGGASGSGV 177
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BLAST of Ec-00_005010.1 vs. uniprot
Match: A0A6H5JR96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR96_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.720e-7
Identity = 62/87 (71.26%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  268 PTNGPGFDDDGNEIDDEEGGNGLXXXXXXXXXXXXXXXXXXXXXXXHGTNHGNVEAGGQSGTGEVADLSERTNLRNTDERGASGSSV 528
            PTNGPGFD+DGNEI          XXXXXXXXXXXXXXXXXXXXXX GTN GNVEAG Q G  E A LSER N   TDE GASGS V
Sbjct:   39 PTNGPGFDNDGNEI----------XXXXXXXXXXXXXXXXXXXXXXRGTNRGNVEAGEQRGADEDAVLSERINKEMTDEGGASGSGV 115
The following BLAST results are available for this feature:
BLAST of Ec-00_005010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVG0_9PHAE4.450e-3575.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR96_9PHAE4.720e-771.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7411899..7413752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length549
Hectar predicted targeting categorymitochondrion
Gene idEc-00_005010.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005010Ec-00_005010Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7411899..7413752 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005010.1.1Ec-00_005010.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7411899..7412163 +
Ec-00_005010.1.2Ec-00_005010.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7413469..7413752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005010.1CDS:Ec-00_005010.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7411899..7412163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005010.1Ec-00_005010.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7411899..7413752 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005010.1 ID=Ec-00_005010.1|Name=Ec-00_005010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=183bp
MVLFAFTCRSCGGMYALRVAMRDQLQSSVLHRIFVDSVFAPRTKTIRIWE
TGYRFQFGPGRIASKLLDKNVSDITEQHAVNAFIPYLDNPTNGPGFDDDG
NEIDDEEGGNGLGGDGSYRDGSAGDGSGGDVSGGDHGTNHGNVEAGGQSG
TGEVADLSERTNLRNTDERGASGSSVSVSKAD*
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spliced messenger RNA

>Ec-00_005010.1 ID=Ec-00_005010.1|Name=Ec-00_005010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=549bp|location=Sequence derived from alignment at chr_00:7411899..7413752+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTGTTTGCTTTCACCTGTCGTTCGTGCGGGGGTATGTATGCATT
ACGGGTGGCAATGAGAGACCAACTACAATCTTCCGTCCTACACCGTATCT
TTGTTGACTCGGTGTTTGCGCCTCGCACAAAAACCATAAGGATCTGGGAG
ACCGGGTATCGGTTCCAGTTCGGCCCCGGAAGGATTGCTAGCAAACTTCT
GGACAAGAACGTCTCGGACATCACGGAGCAACACGCCGTCAACGCCTTCA
TCCCATACCTGGACAACCCCACCAACGGTCCGGGATTCGACGACGACGGC
AACGAAATTGACGACGAAGAAGGCGGCAATGGCTTGGGCGGCGATGGCTC
GTACCGCGATGGCTCGGCCGGCGATGGCTCCGGCGGCGATGTCTCGGGCG
GCGACCACGGCACCAACCACGGCAACGTCGAGGCGGGCGGGCAGAGTGGT
ACCGGCGAGGTTGCTGACCTTTCCGAGCGCACCAACTTACGAAACACGGA
TGAAAGAGGGGCATCCGGTAGCAGTGTTAGTGTTAGTAAGGCTGACTAA
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protein sequence of Ec-00_005010.1

>Ec-00_005010.1 ID=Ec-00_005010.1|Name=Ec-00_005010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=183bp
MVLFAFTCRSCGGMYALRVAMRDQLQSSVLHRIFVDSVFAPRTKTIRIWE
TGYRFQFGPGRIASKLLDKNVSDITEQHAVNAFIPYLDNPTNGPGFDDDG
NEIDDEEGGNGLGGDGSYRDGSAGDGSGGDVSGGDHGTNHGNVEAGGQSG
TGEVADLSERTNLRNTDERGASGSSVSVSKAD*
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mRNA from alignment at chr_00:7411899..7413752+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005010.1 ID=Ec-00_005010.1|Name=Ec-00_005010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1854bp|location=Sequence derived from alignment at chr_00:7411899..7413752+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCCTGTTTGCTTTCACCTGTCGTTCGTGCGGGGGTATGTATGCATT
ACGGGTGGCAATGAGAGACCAACTACAATCTTCCGTCCTACACCGTATCT
TTGTTGACTCGGTGTTTGCGCCTCGCACAAAAACCATAAGGATCTGGGAG
ACCGGGTATCGGTTCCAGTTCGGCCCCGGAAGGATTGCTAGCAAACTTCT
GGACAAGAACGTCTCGGACATCACGGAGCAACACGCCGTCAACGCCTTCA
TCCCATACCTGGACAGTGAGTCTGCCTTAGGGTTCCCTTCAGCATCGTCG
ATTACATTAGTGTTTCAGCTCTTTTTCATTTTTTCCCGCAAAGTATTTCC
GTCTCGGCCATCTCCCTGTCTTCTGCCCCCAGGTTCCGGGGGAATGCGGG
AACGTCTCAACTTTTTTGCCACACCGCGTTACAGTTTCCCTTGACTACCT
TCCCGCCCCTCCCCCCCGCTTGTGCATTGTGGTGTTTGTGCGTTTTATAC
CCCCCCCCCCCATGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTTTGTAGGGATGCGAGGTCAATGGTCT
AACGACTACGGCATGCACGACTATGAGTACATCCCCCCCTCCCCCGATAG
CCATTGGAATTTATCAAACACGCCCATCACTTCGTGAGCTCAATAACCAA
GATACCTGTTTTTTTTCGCCCTTTTTTTTGCGGTCATCATGATGGTGGTC
GAGTGGATTTTGGTGTGCGGGGTCGAAAGCCTCACTTCCAGCAAAGGACC
TGATCACGTTCCGCGTGTTTAGTTGGTCACGCACCCTCGAGGAACTTTTT
CGCAGAGCTTACAACTGTCTCTGGAATAGGAAATGGCAAAACATATATTA
AGTCATTCGTAGCTGTCACCCGAATGCAAGGAAGTAAGCACAAGATGCCG
AACACGCTTCGCGGGATGCAGCGCACCTTCCATGCGACTCGGGATCTCAC
GGCTCTCCCCGCCTGGTGATTGCGAGCCTGGTCCGGTGAGAACCCGGCGT
GCTGCGTCCCGGCATTGTAAGGATGCGAGGCCGATGGTCTAACGACTACG
GTTTGGGTCGGGGATACTCCGGGCTAGTGGTAACGAAACGCCAGGTGTCC
TCCGAGTTTTTCATCAGTAGTACTTCACCAACAATAGTTCCTCCCCGACC
GGAAATCATATGTCAATAGGCTACGGTAGATTCACACCGAGACGTGTGTT
GTGGTGATTTTTGAAGTATATTCGTCCTGCCTATGAGAGAGCAGCTCAAG
TGTTTGAATCTCGAATGCATCCATTAACCGCACCAAGCCGGTAGTTCTTG
TCCCGGCATGTTTGCGTGCGATCGCAAGCAGCGAAGTCAATATGGTGCTA
GCAAAGTGCCCAATCCCACCACACCACTCCATCAAAATACATCTTCCTCT
TGGTGACCGTTTTGTTCCGCGCTGGTTCCCGTTCGTCTACCCCCCTTCCC
CATTTCTTCGGTACACACAGACCCCACCAACGGTCCGGGATTCGACGACG
ACGGCAACGAAATTGACGACGAAGAAGGCGGCAATGGCTTGGGCGGCGAT
GGCTCGTACCGCGATGGCTCGGCCGGCGATGGCTCCGGCGGCGATGTCTC
GGGCGGCGACCACGGCACCAACCACGGCAACGTCGAGGCGGGCGGGCAGA
GTGGTACCGGCGAGGTTGCTGACCTTTCCGAGCGCACCAACTTACGAAAC
ACGGATGAAAGAGGGGCATCCGGTAGCAGTGTTAGTGTTAGTAAGGCTGA
CTAA
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Coding sequence (CDS) from alignment at chr_00:7411899..7413752+

>Ec-00_005010.1 ID=Ec-00_005010.1|Name=Ec-00_005010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=549bp|location=Sequence derived from alignment at chr_00:7411899..7413752+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCCTGTTTGCTTTCACCTGTCGTTCGTGCGGGGGTATGTATGCATT
ACGGGTGGCAATGAGAGACCAACTACAATCTTCCGTCCTACACCGTATCT
TTGTTGACTCGGTGTTTGCGCCTCGCACAAAAACCATAAGGATCTGGGAG
ACCGGGTATCGGTTCCAGTTCGGCCCCGGAAGGATTGCTAGCAAACTTCT
GGACAAGAACGTCTCGGACATCACGGAGCAACACGCCGTCAACGCCTTCA
TCCCATACCTGGACAACCCCACCAACGGTCCGGGATTCGACGACGACGGC
AACGAAATTGACGACGAAGAAGGCGGCAATGGCTTGGGCGGCGATGGCTC
GTACCGCGATGGCTCGGCCGGCGATGGCTCCGGCGGCGATGTCTCGGGCG
GCGACCACGGCACCAACCACGGCAACGTCGAGGCGGGCGGGCAGAGTGGT
ACCGGCGAGGTTGCTGACCTTTCCGAGCGCACCAACTTACGAAACACGGA
TGAAAGAGGGGCATCCGGTAGCAGTGTTAGTGTTAGTAAGGCTGACTAA
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Synonyms
The feature 'Ec-00_005010.1' has the following synonyms
Synonym
Esi396_0034
Esi_396_0034