Ec-00_004980.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004980.1
Unique NameEc-00_004980.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length175
Homology
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BLAST of Ec-00_004980.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 2.880e-131
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1 
Query:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWCT 522
            MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWCT
Sbjct:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWCT 174
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BLAST of Ec-00_004980.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.950e-102
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 1 
Query:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 519
            MSSWYTP+RY DWPGSSPPERNT +R+ LLWQHVFL GLGMKTHVHVAVV+AGLRGCD T MMDVVFGT KK G PLPIL+RW+FCPT  TPG+V++P+LAVWHETAPCFL GV+TTVTKIAI GRIPLEWAWPNPR   LPTARRP  HLQWAIK P VQPVKRR+MLFNA C
Sbjct:    1 MSSWYTPDRYGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKTHVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 174
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BLAST of Ec-00_004980.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.790e-74
Identity = 121/176 (68.75%), Postives = 132/176 (75.00%), Query Frame = 1 
Query:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLE---WAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 519
            MSSWYTPERYAD PGSS  E NTA+REALLWQHVFLGGLG                C TTFM+D+VFGTAKKG+PLPIL+RWDFCPTLI PGLVAKPSLAVWHETAPCFL G+V+TVTKIAIHGR PL+    A P+    T  T   P  +LQ AIK P VQPVKRR+MLFNA C
Sbjct:    1 MSSWYTPERYADGPGSSSSEYNTAIREALLWQHVFLGGLG----------------CGTTFMVDIVFGTAKKGEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPP--NLQCAIKLPGVQPVKRRIMLFNACC 158
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BLAST of Ec-00_004980.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.860e-61
Identity = 95/113 (84.07%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:  184 MMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 519
            MMDVVFGT KK G PLPILMRW+ CPTLITPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGRIPLEWAWPNPR   LPTARRP  HLQWAIK P VQPV+R ++LFNA C
Sbjct:    1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFNACC 113
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BLAST of Ec-00_004980.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 3.140e-22
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:    2 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 121
            CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV
Sbjct:   46 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85
The following BLAST results are available for this feature:
BLAST of Ec-00_004980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G025_ECTSI2.880e-131100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JXU8_9PHAE2.950e-10281.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L242_9PHAE1.790e-7468.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM83_9PHAE1.860e-6184.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI1_ECTSI3.140e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7235095..7236072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length525
Hectar predicted targeting categoryother localisation
Gene idEc-00_004980.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004980Ec-00_004980Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7235095..7236072 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004980.1.2Ec-00_004980.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7235095..7235102 -
Ec-00_004980.1.1Ec-00_004980.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7235556..7236072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004980.1CDS:Ec-00_004980.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7235095..7235102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004980.1Ec-00_004980.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7235095..7236072 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004980.1 ID=Ec-00_004980.1|Name=Ec-00_004980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=175bp
MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVV
QAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLA
VWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHL
QWAIKSPRVQPVKRRMMLFNAWCT*
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spliced messenger RNA

>Ec-00_004980.1 ID=Ec-00_004980.1|Name=Ec-00_004980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=525bp|location=Sequence derived from alignment at chr_00:7235095..7236072- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTTGGGGGGATTGGGTATGAAAACCCATGTACATGTTGCGGTGGTG
CAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAGTGTT
TGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGGGACT
TTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCTTGCA
GTCTGGCATGAAACAGCACCTTGCTTCCTCACCGGTGTCGTGACGACGGT
GACTAAAATCGCCATACACGGACGTATCCCTCTCGAGTGGGCCTGGCCAA
ACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCATCTA
CAATGGGCAATCAAGTCGCCTAGGGTACAGCCAGTCAAGCGTCGAATGAT
GCTGTTCAACGCATGGTGTACTTGA
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protein sequence of Ec-00_004980.1

>Ec-00_004980.1 ID=Ec-00_004980.1|Name=Ec-00_004980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=175bp
MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVV
QAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLA
VWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHL
QWAIKSPRVQPVKRRMMLFNAWCT*
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mRNA from alignment at chr_00:7235095..7236072-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004980.1 ID=Ec-00_004980.1|Name=Ec-00_004980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=978bp|location=Sequence derived from alignment at chr_00:7235095..7236072- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTTGGGGGGATTGGGTATGAAAACCCATGTACATGTTGCGGTGGTG
CAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAGTGTT
TGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGGGACT
TTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCTTGCA
GTCTGGCATGAAACAGCACCTTGCTTCCTCACCGGTGTCGTGACGACGGT
GACTAAAATCGCCATACACGGACGTATCCCTCTCGAGTGGGCCTGGCCAA
ACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCATCTA
CAATGGGCAATCAAGTCGCCTAGGGTACAGCCAGTCAAGCGTCGAATGAT
GCTGTTCAACGCATGGTGCAGGTTAGAATTTTGCAGGGCATGGGTGACGA
CGTGTTCGAGCGTTCAGTTAGGAACTTCCCCGGTTCGCGTGACTACACCA
AGATTTTAACTCACTTACGAGGAGGCAGAAAGCTAACTGTAAGAAAAGCG
TCATAATATTTGGATGGCACAGAGGTGCCAAGGTGCCGATCCTTGCGAAG
TTGCCAGTTCCTGTGCGTAAAGGTTAAAATATATTCTGGGCCTAATTAAA
AACGCACTCGCCGTGCAAAGACTCCGGTCCGTGTGTGTCTGAACAATAAA
ATTAATACGCGGATGTCGTTGTTGTTGTTGTGGTTGTGGTCGTTAGGGTT
GTTTTTGTCTTCTCAATAGAAGAGACCGTTCCGGTATTGCACAGCGGGGG
CTGCCGGTGGACGCTTGATACTCATCCCTCTCTCCCTCTCCCGCGCCACT
GCAATTGTCACTTCTTGTAGGTACTTGA
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Coding sequence (CDS) from alignment at chr_00:7235095..7236072-

>Ec-00_004980.1 ID=Ec-00_004980.1|Name=Ec-00_004980.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=525bp|location=Sequence derived from alignment at chr_00:7235095..7236072- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTTCTTGGTACACTCCGGAAAGGTATGCTGACTGGCCGGGATCCTC
GCCTCCCGAGCGCAATACAGCTATGCGGGAAGCACTTCTTTGGCAGCACG
TATTTTTGGGGGGATTGGGTATGAAAACCCATGTACATGTTGCGGTGGTG
CAAGCTGGGCTGAGAGGTTGCGACACAACGTTCATGATGGACGTAGTGTT
TGGTACTGCCAAGAAGGGGAAGCCATTGCCGATCCTGATGCGGTGGGACT
TTTGCCCGACGCTGATCACTCCGGGTTTGGTTGCGAAGCCTTCGCTTGCA
GTCTGGCATGAAACAGCACCTTGCTTCCTCACCGGTGTCGTGACGACGGT
GACTAAAATCGCCATACACGGACGTATCCCTCTCGAGTGGGCCTGGCCAA
ACCCTCGGACCCTAACCCTACCTACGGCACGACGGCCCCGGACTCATCTA
CAATGGGCAATCAAGTCGCCTAGGGTACAGCCAGTCAAGCGTCGAATGAT
GCTGTTCAACGCATGGTGTACTTGA
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Synonyms
The feature 'Ec-00_004980.1' has the following synonyms
Synonym
Esi0390_0006
Esi_0390_0006