Ec-00_004970.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004970.1
Unique NameEc-00_004970.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length123
Homology
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BLAST of Ec-00_004970.1 vs. uniprot
Match: D7FZU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU9_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.970e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 
Query:    1 MECVERKKKEASDGGRETRTVFLPVDRARAKHAAGDGSCGYHSIRGGLLECKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDELLRIKEEEDEKAKETAEAAKAAKGGARAAPK 366
            MECVERKKKEASDGGRETRTVFLPVDRARAKHAAGDGSCGYHSIRGGLLECKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDELLRIKEEEDEKAKETAEAAKAAKGGARAAPK
Sbjct:    1 MECVERKKKEASDGGRETRTVFLPVDRARAKHAAGDGSCGYHSIRGGLLECKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDELLRIKEEEDEKAKETAEAAKAAKGGARAAPK 122
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BLAST of Ec-00_004970.1 vs. uniprot
Match: D7G3B5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B5_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 7.340e-56
Identity = 94/108 (87.04%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:    1 MECVERKKKEASDGGRETRTVFLPVDRARAKHAAGDGSCGYHSIRGGLLECKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDE--------LLRIKEEED 300
            MECVERKKKE SDGGRETRTVFLPVDRAR KHAAGDGSCGYHSIRGGLL CKG +NTPHDVDAIKTALVSCLLRHVL TKFDPEATLSGDE        LLRIKEEED
Sbjct:   41 MECVERKKKETSDGGRETRTVFLPVDRARVKHAAGDGSCGYHSIRGGLLGCKGQVNTPHDVDAIKTALVSCLLRHVLGTKFDPEATLSGDEKRGVSKAKLLRIKEEED 148
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BLAST of Ec-00_004970.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.630e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  109 GSCGYHSIRGGLLECKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDELLR 282
            G  G     GGLLEC G +NTPHDVDAIKTAL+S LLRHVL T+F+PEATLS DE+ +
Sbjct:  658 GRVGTTPYLGGLLECNGQVNTPHDVDAIKTALISRLLRHVLGTEFNPEATLSDDEVTK 715
The following BLAST results are available for this feature:
BLAST of Ec-00_004970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZU9_ECTSI1.970e-79100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3B5_ECTSI7.340e-5687.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYD3_9PHAE6.630e-1567.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7137559..7139496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length369
Hectar predicted targeting categoryother localisation
Gene idEc-00_004970.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004970Ec-00_004970Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7137559..7139496 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004970.1.2Ec-00_004970.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7137559..7137654 -
Ec-00_004970.1.1Ec-00_004970.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7139224..7139496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004970.1CDS:Ec-00_004970.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7137559..7137654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004970.1Ec-00_004970.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7137559..7139496 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004970.1 ID=Ec-00_004970.1|Name=Ec-00_004970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=123bp
MECVERKKKEASDGGRETRTVFLPVDRARAKHAAGDGSCGYHSIRGGLLE
CKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDELLRIKEEED
EKAKETAEAAKAAKGGARAAPK*
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spliced messenger RNA

>Ec-00_004970.1 ID=Ec-00_004970.1|Name=Ec-00_004970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=369bp|location=Sequence derived from alignment at chr_00:7137559..7139496- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGCGTCGAGCGAAAGAAAAAGGAAGCCAGCGACGGCGGCCGCGA
AACCCGCACAGTGTTCCTGCCCGTGGATAGAGCAAGGGCCAAGCATGCAG
CGGGCGACGGGTCGTGCGGGTACCACTCCATACGTGGTGGCCTGCTGGAG
TGTAAAGGGCATTTGAACACCCCGCATGATGTGGATGCCATCAAGACAGC
CCTGGTGTCGTGCCTACTCCGGCACGTGCTCCCGACCAAATTCGACCCCG
AGGCAACACTTTCAGGCGATGAGCTCCTCAGGATCAAGGAAGAGGAGGAC
GAGAAAGCGAAGGAGACAGCAGAGGCAGCAAAGGCAGCCAAGGGTGGCGC
GCGTGCAGCCCCCAAATAG
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protein sequence of Ec-00_004970.1

>Ec-00_004970.1 ID=Ec-00_004970.1|Name=Ec-00_004970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=123bp
MECVERKKKEASDGGRETRTVFLPVDRARAKHAAGDGSCGYHSIRGGLLE
CKGHLNTPHDVDAIKTALVSCLLRHVLPTKFDPEATLSGDELLRIKEEED
EKAKETAEAAKAAKGGARAAPK*
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mRNA from alignment at chr_00:7137559..7139496-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004970.1 ID=Ec-00_004970.1|Name=Ec-00_004970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1938bp|location=Sequence derived from alignment at chr_00:7137559..7139496- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGTGCGTCGAGCGAAAGAAAAAGGAAGCCAGCGACGGCGGCCGCGA
AACCCGCACAGTGTTCCTGCCCGTGGATAGAGCAAGGGCCAAGCATGCAG
CGGGCGACGGGTCGTGCGGGTACCACTCCATACGTGGTGGCCTGCTGGAG
TGTAAAGGGCATTTGAACACCCCGCATGATGTGGATGCCATCAAGACAGC
CCTGGTGTCGTGCCTACTCCGGCACGTGCTCCCGACCAAATTCGACCCCG
AGGCAACACTTTCAGGCGATGAGGTGACGAAGGGCAGCGATATAGGGTTG
ACTGAAATCAAGAATTGTGCTACCGGCAACGTGATCAAGGGGCCGCCCAG
AGGCGAGCTAAGGTGCGATTGGTTCGAGGCAAGAGTCAACGAACAAATTG
AGAAGGAGTGGCTCGACGTTAGCTGGCTGGCTTTCATCGCCGACCTGTAC
GAGGTAAACATCGCAGTGTGGGAGCCTACGGGGTCGGGACAAAACGAAAC
GCTTTATTCAGCAGCCAGCGCCAGGGGTCTCGTCTTGTTCGACAAAGCGC
AGAAAATGGACGAGGCCGGAGATTACTGGATCCACCTTTTGTTCCGCAAT
CTAGAAGATCCATGGGCGGCACGTTCTGGCGTCAACGGCGTTGTAGACAA
TAACGCGCACGTCATGAACAACCACTTCGACTGGCTGGAACCAGGAGCGG
ACGCGGCATCCGCTTTCGAGGACAATATCCGCGGAGGGCAACAGCAGCCG
GAAGACCCGAGGGAGACCGCACCTTCGCCGGATTTCGGGCCGACCTAGCG
CCAGAAGAGGGGTGTCCCTAAGACTCACGTACAAGTCATGTCTCGACATG
GATGGCAGACGAACGATCCGACCTCCGCGAACGAGGTTGGGGACCGATGG
GAGCCCCGTGAAAAAAAGGCGTGCTTTCGGAAAGGATAAGCAGAAGCCCG
CTGGGTCCGGGACGCGCGCGCCTCCCAGCTCCAAGGACAGAGTGATCAAG
AAAGAGTCAGGCGCGTGTAGGCGGGGGAAACCAAAAACCGGCAACCTCGA
GCCGCATGCGTCATATGACTCCGACGGCAGCATCGGTGAAGGAGGAAAGG
ATTAGACGCACCACATGACCCCTGGAGCGTCGACGGTCTTGACGAAGAGT
AAAAATAAGCTTGCGGCGGACATGACGAAGATCAAGAAAGTGGACTACCA
GCGGGCTTTTTTTTTTAGCAACAAGAGGAAGGCTTTGGGTGATAAAGTGG
GTTTTCTGCAGTTGCTTCAGAATTTCCATGCCGCCTACTGCGATCTGTGT
CTCTTCCTTAGAAATCTACATTTGCATACAATCGAGGAAGGCTACCGGTT
GGTGGTGCTGGCACTTGCAACTCTTTCTTGTTCCCTTCTCGTTCGTGAAT
GCAGCACGCACCGTCCCTCAAACTCGTTTGGCTTGCTCACATCTGTTGCT
CGCATTTTAGGGAGTCTGCGTTAAGTGTCCAAGTTGTTCGTGTGGTGTGC
TGGATGTTGACCGTCAATGGTTTGGTTTCTTCCGTATTTTTGTTGTTGCA
TATTTTTTTTGTCGTGCGTTAATCAGCACCCGTGCCCCGGACTCTCCCTG
CCACCTGCGTATCAGGCTTTCATGTTTTCTGGGCGCTCACACATGTTGCA
AGTGTTTGAAGCGCCGTTCCCTGCTGCGCTGCACTGGTAAATGGGTAGTT
ATATTATTTGTTTATTTTTGCGCCCGCCTTGCGTTCGTGTTCCGTCTGCG
GAATCACGACCCCTATGACAAAGGACGTCCCTGACTACTTCGTTGCTCCC
ACCCCCCCCGGCCGATGGATTCCCGCGACATGACCAATGCAGCTCCTCAG
GATCAAGGAAGAGGAGGACGAGAAAGCGAAGGAGACAGCAGAGGCAGCAA
AGGCAGCCAAGGGTGGCGCGCGTGCAGCCCCCAAATAG
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Coding sequence (CDS) from alignment at chr_00:7137559..7139496-

>Ec-00_004970.1 ID=Ec-00_004970.1|Name=Ec-00_004970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=369bp|location=Sequence derived from alignment at chr_00:7137559..7139496- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGTGCGTCGAGCGAAAGAAAAAGGAAGCCAGCGACGGCGGCCGCGA
AACCCGCACAGTGTTCCTGCCCGTGGATAGAGCAAGGGCCAAGCATGCAG
CGGGCGACGGGTCGTGCGGGTACCACTCCATACGTGGTGGCCTGCTGGAG
TGTAAAGGGCATTTGAACACCCCGCATGATGTGGATGCCATCAAGACAGC
CCTGGTGTCGTGCCTACTCCGGCACGTGCTCCCGACCAAATTCGACCCCG
AGGCAACACTTTCAGGCGATGAGCTCCTCAGGATCAAGGAAGAGGAGGAC
GAGAAAGCGAAGGAGACAGCAGAGGCAGCAAAGGCAGCCAAGGGTGGCGC
GCGTGCAGCCCCCAAATAG
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Synonyms
The feature 'Ec-00_004970.1' has the following synonyms
Synonym
Esi0389_0013
Esi_0389_0013