Ec-00_004940.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004940.1
Unique NameEc-00_004940.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length92
Homology
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BLAST of Ec-00_004940.1 vs. uniprot
Match: D7FZU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU7_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.800e-51
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 273
            MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA
Sbjct:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 91
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BLAST of Ec-00_004940.1 vs. uniprot
Match: D7G4G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G4_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 5.730e-44
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 273
            MRLRNKSSSTPSKQ ATPSKAGSVVLPLEEI+VCIADALTHVFGDKKIVGTLVDKMAGTASQAKAM AVVTAINANS EFITAAK+AGKEA
Sbjct:  137 MRLRNKSSSTPSKQTATPSKAGSVVLPLEEIKVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMRAVVTAINANSSEFITAAKEAGKEA 227
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BLAST of Ec-00_004940.1 vs. uniprot
Match: D7G494_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G494_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 3.230e-42
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 273
            MRLRNKSSSTPSKQAATPSKAGSVVLPLEEI+ CIADALTH FGDKKIVGTLVDKMAGTASQAKAMSAV+TAI ANSREFITAAK+AGKEA
Sbjct:  212 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIKFCIADALTHAFGDKKIVGTLVDKMAGTASQAKAMSAVMTAITANSREFITAAKEAGKEA 302
The following BLAST results are available for this feature:
BLAST of Ec-00_004940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZU7_ECTSI2.800e-51100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4G4_ECTSI5.730e-4494.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G494_ECTSI3.230e-4293.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7108559..7108834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length276
Hectar predicted targeting categoryother localisation
Gene idEc-00_004940.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004940Ec-00_004940Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7096846..7111536 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004940.1.1Ec-00_004940.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7108559..7108834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004940.1CDS:Ec-00_004940.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7108559..7108834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004940.1Ec-00_004940.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7108559..7108834 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004940.1 ID=Ec-00_004940.1|Name=Ec-00_004940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=92bp
MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVG
TLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA*
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spliced messenger RNA

>Ec-00_004940.1 ID=Ec-00_004940.1|Name=Ec-00_004940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=276bp|location=Sequence derived from alignment at chr_00:7108559..7108834- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTTGCGCAACAAGTCCTCCTCTACGCCTTCGAAGCAGGCGGCCAC
GCCTTCGAAGGCTGGATCTGTCGTCCTGCCCCTGGAAGAAATTCAGGTCT
GCATCGCCGACGCCTTGACGCACGTGTTCGGAGACAAGAAGATCGTCGGT
ACTTTGGTAGACAAGATGGCAGGGACTGCGAGCCAAGCGAAGGCCATGAG
CGCAGTAGTGACAGCCATCAATGCCAACTCCAGGGAGTTCATTACTGCCG
CCAAGGACGCCGGCAAAGAAGCATGA
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protein sequence of Ec-00_004940.1

>Ec-00_004940.1 ID=Ec-00_004940.1|Name=Ec-00_004940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=92bp
MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVG
TLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA*
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mRNA from alignment at chr_00:7108559..7108834-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004940.1 ID=Ec-00_004940.1|Name=Ec-00_004940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=276bp|location=Sequence derived from alignment at chr_00:7108559..7108834- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGGTTGCGCAACAAGTCCTCCTCTACGCCTTCGAAGCAGGCGGCCAC
GCCTTCGAAGGCTGGATCTGTCGTCCTGCCCCTGGAAGAAATTCAGGTCT
GCATCGCCGACGCCTTGACGCACGTGTTCGGAGACAAGAAGATCGTCGGT
ACTTTGGTAGACAAGATGGCAGGGACTGCGAGCCAAGCGAAGGCCATGAG
CGCAGTAGTGACAGCCATCAATGCCAACTCCAGGGAGTTCATTACTGCCG
CCAAGGACGCCGGCAAAGAAGCATGA
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Coding sequence (CDS) from alignment at chr_00:7108559..7108834-

>Ec-00_004940.1 ID=Ec-00_004940.1|Name=Ec-00_004940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=276bp|location=Sequence derived from alignment at chr_00:7108559..7108834- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGGTTGCGCAACAAGTCCTCCTCTACGCCTTCGAAGCAGGCGGCCAC
GCCTTCGAAGGCTGGATCTGTCGTCCTGCCCCTGGAAGAAATTCAGGTCT
GCATCGCCGACGCCTTGACGCACGTGTTCGGAGACAAGAAGATCGTCGGT
ACTTTGGTAGACAAGATGGCAGGGACTGCGAGCCAAGCGAAGGCCATGAG
CGCAGTAGTGACAGCCATCAATGCCAACTCCAGGGAGTTCATTACTGCCG
CCAAGGACGCCGGCAAAGAAGCATGA
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Synonyms
The feature 'Ec-00_004940.1' has the following synonyms
Synonym
Esi0389_0008
Esi_0389_0008