Ec-00_004900.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004900.1
Unique Name	Ec-00_004900.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	207

Homology

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BLAST of Ec-00_004900.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 4.790e-148
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQREQQNSSA 618
            MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQREQQNSSA
Sbjct:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQREQQNSSA 206

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 6.420e-115
Identity = 176/206 (85.44%), Postives = 189/206 (91.75%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQREQQNSSA 618
            MTVGKQHDGYWTSDRMCAQLPAAIA FEL++GPHRQGV IFDNSTGHN YDDDALLAHK+SLAPGGEK ALRVFEDDNG+TVHPT Q+G TLLTDKKIFLPKTEAQ+K KGRKFGTGLDKK+YP GT+ T GSPLLGLNKGGEQMLK MGLWRLDGERAKGLVKC NKCKA NA SRQAIAAFNK G +RER++EQA+REQQ+S A
Sbjct:  501 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGLWRLDGERAKGLVKCCNKCKADNAASRQAIAAFNKGGEQRERVLEQARREQQSSPA 706

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 6.220e-109
Identity = 170/197 (86.29%), Postives = 177/197 (89.85%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQA 591
            MTVGKQ DGYWTSDRMCAQLPAA+ATFELT+GPHRQGV IFDNSTGHN YDDDALLAHK+SLAPGGEKTALRVFEDDNGR VHPT Q G TLLTDKKIFLPKT  Q+K KGRK GTGLDKKQYP GTK T GSPLLGL+KGGEQMLK MGLWRLDGERAKGLVKC NKCKA NA SRQAIAAFNK G ERER++EQA
Sbjct:  553 MTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKTPEQKKIKGRKHGTGLDKKQYPVGTKVTHGSPLLGLSKGGEQMLKEMGLWRLDGERAKGLVKCCNKCKAENAASRQAIAAFNKGGEERERVLEQA 749

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 1.830e-89
Identity = 149/202 (73.76%), Postives = 165/202 (81.68%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQREQQ 606
            M VG+QHDGYWTSD MCAQLPA IA  ELT GPHRQGV IFDNSTGHN YD DALLAH ++LAPGGEK ALRVFED +G+ V+PT QLG TLLTD+KIFLPKTE Q+K K RK GT LDK ++P GTK    SPLLGLNKGGEQML+ MGLWRL GE+ +GLVK  NKCKA NA +RQAIAAFNK G ERER++EQA  EQQ
Sbjct:  368 MPVGQQHDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKRKSGTALDKDKFPVGTKVVLRSPLLGLNKGGEQMLREMGLWRLRGEK-RGLVKGCNKCKADNAAARQAIAAFNKGGEERERVLEQAWWEQQ 568

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5KE66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE66_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.600e-67
Identity = 117/187 (62.57%), Postives = 133/187 (71.12%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDG 561
            MTVG+QHD YWTSDRMCA+LPA IA  ELT GPHRQ V IFDNSTGHN Y +DALLAHK+++APGGEK ALRVFEDDNG TV                       ++K K RK GT LDKK++  GTK   GSPLLG+NKG EQML+ MGLWRL GER +GL++   KCKA+NA SRQ I AFNK G
Sbjct:  360 MTVGQQHDRYWTSDRMCARLPAIIAMVELTSGPHRQDVLIFDNSTGHNAYGEDALLAHKINMAPGGEKGALRVFEDDNGNTV-----------------------EKKQKERKNGTALDKKKFSVGTKVVAGSPLLGVNKGAEQMLREMGLWRLGGERKEGLLQICKKCKANNAASRQEITAFNKRG 523

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5L669_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L669_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.910e-39
Identity = 94/212 (44.34%), Postives = 123/212 (58.02%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTE------------AQEK----TKGRKFGTGLDKKQYPFGTKAT-PGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVE 585
            MTVG+  DGYW   RM  Q+P  IA  ELT  PHRQ V +FDNSTGH+ +   AL+   ++L PGG + ALR FEDD G  VH T ++G  L     +F PKTE            A+EK     K +K G  L K +     KAT P + L+GL KGG+Q+L  MGLW  +GE    + +CS  C+A  A +RQAI AFN+ G  R+++V+
Sbjct:  360 MTVGQHQDGYWNCARMLEQIPGLIAIHELTSEPHRQLVMVFDNSTGHSAFGAGALVGEHVALRPGGAQGALRNFEDDEGNPVHTTFRVGDKLRFTTNVFAPKTEEELEAEKKAAEEAEEKGLPVKKSKKNGKNLGKFKKDDEVKATGPTAVLIGLPKGGKQLLMEMGLW--EGEPTLRVHECS-ACRAEKAATRQAITAFNRGGEGRQQVVD 568

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5JVL6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.230e-33
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRT-VHPTPQLGGTLLTDKKIFLPKTE------------AQEK----TKGRKFGTGLDKKQYPFGTKAT-PGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAF 549
            MTVG+  DGYW   RM  ++P  IA  ELT  PHRQ   +FDNSTG++ +   AL+   ++L PGG + ALR  EDD G+  VH T ++G  L     +F PKTE            A+EK     K +K G  L K +     KAT P + L+GL KGG+Q+L  MGLW  +GE    + +CS  C+A  A +RQAI AF
Sbjct:  232 MTVGQHQDGYWNCARMLERIPGLIAIHELTSEPHRQLFMVFDNSTGYSAFGAGALVGEHIALRPGGAQGALRNCEDDEGKNPVHTTFRVGDKLRFTTNVFAPKTEEELEAEKKAAEEAEEKGLPVKKSKKNGKNLGKFKKGDEVKATGPTAVLIGLPKGGKQLLMEMGLW--EGEPTLRVHECS-ACRAEKAATRQAITAF 429

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.810e-32
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTK---GRKFGTGLDKKQYPFGT---KATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLV 582
            + VGK  DGYW  +R+C QLPA  A FEL+  P RQ + +FDNSTGHN +  DAL A  ++L+ GGE+     FE  NGRT++ T QLG  L      F  KTE ++  K   G+K G       +P GT   + TP   L+G+ KG +++L+ M L++LDGE     ++C  +C       R     +NK G  R++ +
Sbjct:  177 LRVGKNLDGYWDCNRLCVQLPAIFAAFELSREPGRQMLMVFDNSTGHNAFSPDALRAQNIALSAGGEQVPPHSFEY-NGRTIYTTFQLGDKLRFKTAPFARKTEEEKTAKKRNGKKLGV------FPIGTVIRQGTPSEKLVGIAKGMKEILEDMELYKLDGESKPPKLECQ-RCLDEAKAKRDKSKMYNKGGESRQQAL 368

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.480e-31
Identity = 77/201 (38.31%), Postives = 111/201 (55.22%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQ---EKTKGRKFGTGLDKKQYPFGT---KATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVE 585
            + VGK  DGYW S+R+C QL A  A FE++  P RQ +++FDNSTGHN Y  DAL A  +  +PGGE+   R FE  NGRT++ T + G  L      F  KTEA+   +K  G++ G       +P GT   + T    L+G+ KG +++L+ MGL++L  E     + C  +CK      R     +NK G  R++ +E
Sbjct:  199 LRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEY-NGRTIYTTFREGDVLCFRSSPFARKTEAEAVAKKRHGKRLGV------FPIGTVVKRGTSSEKLIGVAKGMKEILEDMGLYKLASETKAPPLLCQ-RCKDEAKAKRDKSTMYNKGGESRQQALE 391

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BLAST of Ec-00_004900.1 vs. uniprot
Match: A0A6H5JDB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.150e-30
Identity = 77/201 (38.31%), Postives = 111/201 (55.22%), Query Frame = 1

Query:    1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQ---EKTKGRKFGTGLDKKQYPFGT---KATPGSPLLGLNKGGEQMLKGMGLWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVE 585
            + VGK  DGYW S+R+C QL A  A FE++  P RQ +++FDNSTGHN Y  DAL A  +  +PGGE+   R FE  NGRT++ T + G  L      F  KTEA+   +K  G++ G       +P GT   + T    L+G+ KG +++L+ MGL++L  E     + C  +CK      R     +NK G  R++ +E
Sbjct:  406 LRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEY-NGRTIYTTFREGDVLCFRSSPFARKTEAEAVAKKRHGKRLGV------FPIGTVVKRGTSSEKLIGVAKGMKEILEDMGLYKLASETKAPPLLCQ-RCKDEAKAKRDKSTMYNKGGESRQQALE 598

The following BLAST results are available for this feature:

BLAST of Ec-00_004900.1 vs. uniprot

BLAST of Ec-00_004900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FZS5_ECTSI	4.790e-148	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JJM4_9PHAE	6.420e-115	85.44	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K550_9PHAE	6.220e-109	86.29	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JD27_9PHAE	1.830e-89	73.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KE66_9PHAE	2.600e-67	62.57	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L669_9PHAE	2.910e-39	44.34	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVL6_9PHAE	4.230e-33	42.79	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KGB3_9PHAE	2.810e-32	39.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K344_9PHAE	4.480e-31	38.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JDB4_9PHAE	1.150e-30	38.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:7005381..7006001 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	419.1
Seed ortholog evalue	1.2e-114
Seed eggNOG ortholog	2880.D7FZS5
Length	621
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004900.1
EggNOG OGs	2D16T@1,2SGXK@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004900	Ec-00_004900	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 7005381..7006001 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004900.1.1	Ec-00_004900.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 7005381..7006001 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004900.1	CDS:Ec-00_004900.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 7005381..7006001 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004900.1	Ec-00_004900.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 7005381..7006001 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:7005381..7006001+
coding sequence from alignment at chr_00:7005381..7006001+

mRNA sequence

>Ec-00_004900.1 ID=Ec-00_004900.1|Name=Ec-00_004900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=207bp
MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTY
DDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFL
PKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMG
LWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQRE
QQNSSA*

spliced messenger RNA

>Ec-00_004900.1 ID=Ec-00_004900.1|Name=Ec-00_004900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=621bp|location=Sequence derived from alignment at chr_00:7005381..7006001+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTTGGGAAGCAGCACGATGGCTACTGGACGAGCGACCGCATGTG
CGCCCAACTGCCGGCGGCTATCGCCACGTTCGAGCTGACGCATGGGCCGC
ACCGGCAGGGTGTCTCCATCTTCGACAATTCCACCGGGCACAACACTTAT
GACGACGACGCGCTGCTGGCCCACAAGATGAGCTTGGCGCCTGGCGGGGA
GAAGACCGCGCTCAGGGTGTTCGAGGATGACAACGGGAGGACAGTACACC
CTACACCCCAGCTTGGTGGCACCCTGCTCACCGACAAGAAGATTTTCTTG
CCGAAGACAGAGGCGCAAGAGAAGACCAAGGGGCGCAAGTTTGGAACGGG
GCTCGACAAAAAGCAGTACCCCTTTGGAACCAAAGCCACACCTGGATCGC
CGCTGCTTGGGCTCAACAAAGGAGGAGAGCAGATGCTCAAGGGGATGGGG
TTGTGGCGGCTTGACGGCGAGAGGGCGAAGGGGCTCGTCAAGTGTTCCAA
CAAGTGCAAGGCCCACAACGCGACATCACGGCAGGCGATCGCAGCATTCA
ACAAAGACGGTCGGGAACGGGAGAGACTTGTAGAGCAAGCGCAGCGGGAG
CAGCAGAATTCTTCCGCCTAA

protein sequence of Ec-00_004900.1

>Ec-00_004900.1 ID=Ec-00_004900.1|Name=Ec-00_004900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=207bp
MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTY
DDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFL
PKTEAQEKTKGRKFGTGLDKKQYPFGTKATPGSPLLGLNKGGEQMLKGMG
LWRLDGERAKGLVKCSNKCKAHNATSRQAIAAFNKDGRERERLVEQAQRE
QQNSSA*

mRNA from alignment at chr_00:7005381..7006001+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004900.1 ID=Ec-00_004900.1|Name=Ec-00_004900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=621bp|location=Sequence derived from alignment at chr_00:7005381..7006001+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCGTTGGGAAGCAGCACGATGGCTACTGGACGAGCGACCGCATGTG
CGCCCAACTGCCGGCGGCTATCGCCACGTTCGAGCTGACGCATGGGCCGC
ACCGGCAGGGTGTCTCCATCTTCGACAATTCCACCGGGCACAACACTTAT
GACGACGACGCGCTGCTGGCCCACAAGATGAGCTTGGCGCCTGGCGGGGA
GAAGACCGCGCTCAGGGTGTTCGAGGATGACAACGGGAGGACAGTACACC
CTACACCCCAGCTTGGTGGCACCCTGCTCACCGACAAGAAGATTTTCTTG
CCGAAGACAGAGGCGCAAGAGAAGACCAAGGGGCGCAAGTTTGGAACGGG
GCTCGACAAAAAGCAGTACCCCTTTGGAACCAAAGCCACACCTGGATCGC
CGCTGCTTGGGCTCAACAAAGGAGGAGAGCAGATGCTCAAGGGGATGGGG
TTGTGGCGGCTTGACGGCGAGAGGGCGAAGGGGCTCGTCAAGTGTTCCAA
CAAGTGCAAGGCCCACAACGCGACATCACGGCAGGCGATCGCAGCATTCA
ACAAAGACGGTCGGGAACGGGAGAGACTTGTAGAGCAAGCGCAGCGGGAG
CAGCAGAATTCTTCCGCCTAA

Coding sequence (CDS) from alignment at chr_00:7005381..7006001+

>Ec-00_004900.1 ID=Ec-00_004900.1|Name=Ec-00_004900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=621bp|location=Sequence derived from alignment at chr_00:7005381..7006001+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCGTTGGGAAGCAGCACGATGGCTACTGGACGAGCGACCGCATGTG
CGCCCAACTGCCGGCGGCTATCGCCACGTTCGAGCTGACGCATGGGCCGC
ACCGGCAGGGTGTCTCCATCTTCGACAATTCCACCGGGCACAACACTTAT
GACGACGACGCGCTGCTGGCCCACAAGATGAGCTTGGCGCCTGGCGGGGA
GAAGACCGCGCTCAGGGTGTTCGAGGATGACAACGGGAGGACAGTACACC
CTACACCCCAGCTTGGTGGCACCCTGCTCACCGACAAGAAGATTTTCTTG
CCGAAGACAGAGGCGCAAGAGAAGACCAAGGGGCGCAAGTTTGGAACGGG
GCTCGACAAAAAGCAGTACCCCTTTGGAACCAAAGCCACACCTGGATCGC
CGCTGCTTGGGCTCAACAAAGGAGGAGAGCAGATGCTCAAGGGGATGGGG
TTGTGGCGGCTTGACGGCGAGAGGGCGAAGGGGCTCGTCAAGTGTTCCAA
CAAGTGCAAGGCCCACAACGCGACATCACGGCAGGCGATCGCAGCATTCA
ACAAAGACGGTCGGGAACGGGAGAGACTTGTAGAGCAAGCGCAGCGGGAG
CAGCAGAATTCTTCCGCCTAA

Synonyms

The feature 'Ec-00_004900.1' has the following synonyms


Synonym
Esi0385_0015
Esi_0385_0015