Ec-00_004830.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004830.1
Unique NameEc-00_004830.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length75
Homology
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5JMP6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP6_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.760e-94
Identity = 184/219 (84.02%), Postives = 195/219 (89.04%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VEHVVPDA S LPVAGPAE +VD + RDDLS AVE ASVE LG  L+GVRLADLDPAQADQ E+AVAHVP P L+ GAV +N SAL  LPFAMC ALDAE +GLR SG+TRTPSVRLRPIGDVQLPPVGETGLLQDEQ AGPTPV+AVPP XXXXXXXXSP+H SHDDIGEVLAARGEVPRSSSGP+VRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ
Sbjct:  199 VEHVVPDALSWLPVAGPAEVDVDDASRDDLSSAVEGASVEVLGSALDGVRLADLDPAQADQTEDAVAHVPPPHLIQGAVYSNLSALRVLPFAMCAALDAEPRGLRCSGKTRTPSVRLRPIGDVQLPPVGETGLLQDEQVAGPTPVQAVPPTXXXXXXXXSPIHHSHDDIGEVLAARGEVPRSSSGPNVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 417
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.110e-56
Identity = 138/212 (65.09%), Postives = 152/212 (71.70%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQR 2488
            VEHVVPDA S+ PVAG AE                                  +   +  Q E+AVA+V  PP   GAV++N SAL ALPFAM   LDA+ + LRRSGRTRTPSV L+PIG VQLPPVGETGLLQDEQ AGPTPVEAVPPAXXXXXXXXSPV RSHDDIGEVLAARG+VPRSS GPDVRGTSAIDRAA+VLTKPSILAQR++
Sbjct:  895 VEHVVPDALSQFPVAGTAE----------------------------------VSKGRTAQTEDAVAYVSLPPPAQGAVDSNLSALRALPFAMGAVLDAKPRELRRSGRTRTPSVPLKPIGGVQLPPVGETGLLQDEQVAGPTPVEAVPPAXXXXXXXXSPVQRSHDDIGEVLAARGDVPRSSLGPDVRGTSAIDRAARVLTKPSILAQRRK 1072
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5JZD5_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD5_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.820e-54
Identity = 128/219 (58.45%), Postives = 143/219 (65.30%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VE+VVPDA SRLPVA P E +VD SF DDLS A   A+VE LGPEL GVRLA+LDP Q DQ  +A +  PS     GA + + SAL ALPF  C A+D E    RRSGRTRTPSVRLRPIGD QLPP      L D +  GP+ V+A  PA        SPV   HDDIGEVLAARGEV  SSS   + G SAID  A+VLT+PS LA RQR  T L Q
Sbjct:  169 VEYVVPDALSRLPVANPVEVDVDDSFPDDLSCAA-GAAVEILGPELKGVRLAELDPVQVDQVGDADSQ-PSHLTPEGA-DFHLSALRALPFVACAAVDHEPDAPRRSGRTRTPSVRLRPIGDAQLPPTSVLEALPDREVIGPSAVQAPTPAPSPSTLPPSPVSPGHDDIGEVLAARGEVTTSSSSHALDGASAIDLTARVLTRPSELAHRQRVYTQLSQ 384
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.220e-53
Identity = 132/219 (60.27%), Postives = 147/219 (67.12%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VEHVVPDA SRLPVA P E +VD SF DDLS A   A+VE LGPEL GVRLA+LDP Q DQ  +A +  PS P   GA + + SAL ALPFA C A+D E    RRSGRTRTPSVRLRPIGD QLPP      L D +  GP+ V+A  PA        SPV+  HDDIGEVLAARGEV  SSS   + G SAID  A+VLT+PS LA RQR DT L Q
Sbjct: 1092 VEHVVPDALSRLPVANPVEVDVDDSFPDDLSCAA-GAAVEILGPELKGVRLAELDPVQVDQVGDADSQ-PSHPTPEGA-DFHLSALRALPFAACAAVDHEPDAPRRSGRTRTPSVRLRPIGDAQLPPTSVLEALPDREAIGPSAVQASTPAPSPSTLPPSPVNPGHDDIGEVLAARGEVTTSSSSHALDGASAIDLTARVLTRPSELAHRQRVDTHLSQ 1307
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 4.890e-53
Identity = 131/219 (59.82%), Postives = 145/219 (66.21%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VEHVVPDA SRLPVA P E +VD SF DDLS A   A+VE LGPEL GVRLA+LDP Q DQ  +A +  PS P   GA + + SAL ALPFA C A+D E    RRS RTRTPSVRLRPIGD QLPP      L D +  GP+ V+A  PA        SPV   HDDIGEVLAARGEV  SSS   + G SAID  A+VLT+PS LA RQR DT L Q
Sbjct:  570 VEHVVPDALSRLPVANPVEVDVDDSFPDDLSCAA-GAAVEILGPELKGVRLAELDPVQVDQVGDADSQ-PSHPTPEGA-DFHLSALRALPFAACAAVDHEPDAPRRSDRTRTPSVRLRPIGDAQLPPTSVLEALPDREVIGPSAVQASTPAPSPSTLPPSPVSPGHDDIGEVLAARGEVTTSSSSHALDGASAIDLTARVLTRPSELAHRQRVDTHLSQ 785
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 2.810e-52
Identity = 129/221 (58.37%), Postives = 142/221 (64.25%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVP--SPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VEHVVPDA SR PVA P E +VD SF DDLS A   A++E LGPEL GVRLA+LDP Q DQ  NA  H    +P +     + + S+L ALPFA C A+D E    RRSGRTRTPSVRLR IG  QLPP      L D +  GP+ VE   PA        SPV   HDDIGEVLAARGEVP SSS     G SAID AAQVLT+PS LA RQRDDT L Q
Sbjct:  684 VEHVVPDALSRFPVANPVEVDVDDSFPDDLSFAA-GAALEILGPELKGVRLAELDPVQVDQVGNADPHTSHHTPEVA----DFHLSSLRALPFAACAAVDREPDAPRRSGRTRTPSVRLRQIGYAQLPPTSVLEALPDREVIGPSAVELSAPAPSPLTLPPSPVRPGHDDIGEVLAARGEVPTSSSSHASDGASAIDLAAQVLTRPSELAHRQRDDTHLSQ 899
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5JIE2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.960e-50
Identity = 121/219 (55.25%), Postives = 138/219 (63.01%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VEHVVPDA S LPV  P E + D SF DDLS     ASVE +GP+L+GVRLA+LDP Q D+  +A +  PS P      N + SAL ALPFA C A+D E    RRSGRTRTPSVRL PI D QL        + D +  GPT VE+  PA        SP    HDDIGEVLAARGEVP SSS   +   SAID  A++LTKPS LA RQ+DDT LGQ
Sbjct:  328 VEHVVPDALSWLPVTCPVEVDADDSFPDDLSSTAAGASVEIVGPDLDGVRLAELDPVQVDRGGDADSQ-PSHPTPE-MTNFHLSALRALPFAACAAVDPERDAARRSGRTRTPSVRLPPIDDAQLLLTSVLEAIPDREAIGPTTVESFAPAPSPSTLPPSPGRPGHDDIGEVLAARGEVPASSSSQTIGRASAIDLTARILTKPSELAHRQQDDTHLGQ 544
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5KGF2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF2_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 6.770e-47
Identity = 119/201 (59.20%), Postives = 130/201 (64.68%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVL 2455
            VEHVVPDA SRLPVA P E +VD SF DDLS A   A VE LGPEL GVRLA+LDP Q DQ  +A +  PS P   GA + + SAL ALPFA C A+D E    RRSGRTRTPSVRLRPIGD QLPP      L D +  GP  V+A  PA        SPV    DDIGEVLAARGEV  SSS   + G SAID  A+VL
Sbjct:  443 VEHVVPDALSRLPVANPVEVDVDDSFPDDLSCAAGTA-VEILGPELKGVRLAELDPVQVDQVGDADSQ-PSHPTPEGA-DFHLSALRALPFAACAAVDHEPDAPRRSGRTRTPSVRLRPIGDAQLPPTSVLEALPDRKVIGPAAVQASSPAPSPSTLPPSPVSPGDDDIGEVLAARGEVTTSSSSHALDGASAIDLTARVL 640
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5J999_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J999_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.040e-37
Identity = 110/221 (49.77%), Postives = 125/221 (56.56%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHV--PSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VEHVVPDA SRLPVA P E +VD SF D LS A   AS+E  GPEL GVRLA+LDP Q DQ  +A  H   P+P +    +    SAL ALPFA     D    G   + R R  +            P   TG    ++  GPT VE+  PA        SPV   HDDIGEVLAARGEVP  SS   + G SAID  A+VLT+PS LA RQRDDT LGQ
Sbjct:  274 VEHVVPDALSRLPVANPVEVDVDDSFPDYLSSAAAGASLEISGPELKGVRLAELDPVQVDQVGDADFHTSHPTPEVADFQL----SALRALPFAASP--DPYPFGAITTDRRRAAA------------PDKRTGGHPGKRGHGPTTVESSAPALSPPTLPPSPVRPGHDDIGEVLAARGEVPTYSSSQAIGGASAIDLTARVLTRPSELAHRQRDDTHLGQ 476
[Close]
BLAST of Ec-00_004830.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 4.050e-32
Identity = 97/219 (44.29%), Postives = 106/219 (48.40%), Query Frame = 2 
Query: 1853 VEHVVPDARSRLPVAGPAEENVDGSFRDDLSPAVEDASVEALGPELNGVRLADLDPAQADQKENAVAHVPSPPLVHGAVNANPSALGALPFAMCTALDAESQGLRRSGRTRTPSVRLRPIGDVQLPPVGETGLLQDEQEAGPTPVEAVPPAXXXXXXXXSPVHRSHDDIGEVLAARGEVPRSSSGPDVRGTSAIDRAAQVLTKPSILAQRQRDDTLLGQ 2509
            VE+VVPDA SRLPVA P E +VD S  DDL      ASVE LGPEL+G                                                            RTR PSVRLRPI D QLPP      + D +  GPT VE+  PA        SPV   HDDIGEVLAARGE P SSS   + G SAID  A+VLT+PS LA RQRDDT LGQ
Sbjct: 1225 VENVVPDALSRLPVANPVEVDVDDSIPDDLLSPAAGASVEILGPELDG-----------------------------------------------------------RRTRIPSVRLRPIDDAQLPPTSVLEAIPDREAIGPTTVESSAPAPAPSTLPPSPVRPGHDDIGEVLAARGEFPTSSSSQAIGGASAIDLTARVLTRPSELAHRQRDDTHLGQ 1384
The following BLAST results are available for this feature:
BLAST of Ec-00_004830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JMP6_9PHAE1.760e-9484.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7F8_9PHAE3.110e-5665.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZD5_9PHAE1.820e-5458.45RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEH2_9PHAE1.220e-5360.27RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KFK7_9PHAE4.890e-5359.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LDH3_9PHAE2.810e-5258.37RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JIE2_9PHAE1.960e-5055.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGF2_9PHAE6.770e-4759.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J999_9PHAE1.040e-3749.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZY5_9PHAE4.050e-3244.29Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6621875..6626531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length3319
Hectar predicted targeting categoryother localisation
Gene idEc-00_004830.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004830Ec-00_004830Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6621875..6626531 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004830.1.1Ec-00_004830.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6621875..6623264 +
Ec-00_004830.1.2Ec-00_004830.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6624603..6626531 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0048305UTR:Ec-00_004830.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 6621875..6623146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004830.1CDS:Ec-00_004830.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6623147..6623264 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0048303UTR:Ec-00_004830.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 6624710..6626531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004830.1Ec-00_004830.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6623147..6624709 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004830.1 ID=Ec-00_004830.1|Name=Ec-00_004830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=75bp
MSRGRHHTAPRGPRDIAFCKGGDAAVTGARLPESRAEYPGRIGGHRNVVG
TSPRTTATRRRAQGAGFHKCRDSS*
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spliced messenger RNA

>Ec-00_004830.1 ID=Ec-00_004830.1|Name=Ec-00_004830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3319bp|location=Sequence derived from alignment at chr_00:6621875..6626531+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGGTTACATAGTTTACGGTACAGGGAGTTGCACCCTTCGGGATT
ATAGCGTTGTTCCCATAGGGTGGTGTTGACAGTTCTGTACAATTGCGGAA
CCCCTTGTCTCGGGCTTCGTGCTGCCGCACGAAGCCCACTTACTTACTTA
CTTCCTGTTGGCATCCCGTGCTCAGCAAAAATCAAAGTGCATTCCGTATC
CACGACGGGAGACCTTCTCCACGCTCCACAAGCCTACATCTAGGCTTCCT
CTACCGCTGTTCAAGCGCGCATCTTCGAACTCGGTACTGATCGAGAGGCT
GCTACCATCAGGTCGGTAGCTTTTGGTAATCATTCCGGAAAGCGTGACTC
CCTTCCTATACACACAACCCTGGACTTGTGGCCACGAATGGCCACAAGCA
CATGCCTAGATAGACCCACTCAAGTCGCGAGATCCATCCCAAGTCAGAGC
CTCTCTTTCCGTCACATGGTGTCCGATCCGAGCACTGTAGTACATGTGCT
GTTGTGGTACTGCTGTTGTGTAGACGTGAGGTACAGTAGCTCACGCTCAC
GCTGGGAAATGCGGCGAGATTATTATTTCTGCCGCGACCCTGCCTGCATG
TTGTTTTGTCGTACTGTATTGTCTATCCTTGCGGCTCGTGCTTCGAGCCG
AACTGTCCATCGCGAAAGCACACCTGGGAGCCTCTACGCTCTTGGGTGTC
TGTCCCTTTGCTTTCAACCCGTTGTGGCCCTAGTTTTCTTGCTTGCTATA
GCGTGCTGTGGGTACAGGTTACTGCTGCAGGAGACCCTGTGGCTCACACT
TTTTCACTGCCGTGGGGAGAAGGAGGACCCTGTGGCTCACACTTCTTTAC
TGCCGTGGGAAGAAGGAGGACCTGGCCGCACACGCAGACGACGGAGGCTG
GCTGTTTCCTGATGGGCGAGTTGCATGCAAGCTTGAGCCACACACACCGT
GTTGACCCCTGTTGCCGTCTTTCCCTTTCGGCGGCCGATAATGATGATGT
TTATGAGAAATTAAGTGCATAAGTCCGAGCTTGAGTTGCAGATTCAGGCC
TTGCGGAAACCGGTGTGTATGTGTCTCGCTTTCGCAACCTCTTCCTGGTC
TTGGAATACATGCGTCTGGTCTTTGCTGCTGGATGCAAGTCCACGTCCAA
GGCCCAGGCCCAAGCGTCGCTAACATCAACGCGCCAATTCTTGCTACCAC
GTACGTACCACGCCCACCGATGGGCGCTGAACCCCAATTTTCCATTTCCT
CTGCTGCTTTCAAGCGTTTGCGATGTCGCGCGGCCGTCATCACACAGCTC
CCCGGGGACCGCGGGATATTGCTTTCTGCAAGGGGGGAGACGCCGCGGTC
ACCGGAGCACGGCTGCCTGAAAGCAGGGCGGAATACCCAGGCAGGATTGG
AGGCCATCGGAATGTCGTCGGCACGTCTCCCAGAACAACAGCAACGAGGC
GACGCGCACAGGGAGCAGGTTTTCACAAGTGTCGTGACAGCAGTTGAAGG
CTTGGGGGTACGTAAAGAGGCAAGACGTTGAGTAGGCTAATGCGAACAAA
GGGAACGAGTTGCCAGCCACCGCAGAGTCCATGTTAGCCGACATAGTCGT
GCTGCCCCACACACGTACGACCACGCAGGGATGGAAGTGACCTGGTCTTT
GATATTCTACAGTTGTCACTGGCCCACCTTGGCGATATGCATTGGCAGTT
TGTGGTGGCCATGTTGCACTACGGATGTCGAAAGAATAAGAGATCGTTAC
CCTTTCTCCTAACACAACCCCCTTCGAGAACGGGTAGTTTGCCCGTCCCT
TGCACGTTCATAGAGGCTCTTTGTGGCGCCGCGCGTTGAGACATCGCCAG
CGTCGTAGAGCACGTTGTGCCCGACGCGCGCTCGCGGCTCCCGGTTGCAG
GGCCCGCTGAGGAGAACGTCGATGGCTCTTTTCGGGACGATTTGTCGCCC
GCGGTAGAGGACGCGTCAGTCGAGGCTCTGGGCCCAGAGTTGAACGGTGT
GAGATTGGCCGATCTAGACCCTGCACAGGCAGACCAAAAGGAGAATGCGG
TAGCTCACGTCCCTTCCCCACCCTTGGTCCATGGGGCCGTTAACGCTAAC
CCCTCCGCCCTTGGAGCGCTGCCCTTTGCGATGTGCACAGCGTTGGATGC
CGAGTCCCAGGGACTACGCCGTAGCGGCAGGACTCGCACGCCATCCGTAC
GCCTGCGGCCCATCGGCGACGTGCAGCTGCCACCGGTGGGAGAGACGGGG
CTTCTCCAGGACGAGCAGGAGGCTGGACCCACACCTGTCGAAGCCGTGCC
ACCCGCACCCCCGCTTCCAGCGCTACCGCCGTCGCCCGTCCATCGAAGCC
ACGACGACATCGGTGAAGTGCTCGCGGCGCGGGGGGAGGTACCGAGGTCG
TCGTCGGGACCAGATGTTCGTGGGACGTCAGCCATTGACCGGGCGGCGCA
GGTTCTCACCAAGCCATCCATCCTCGCCCAACGGCAACGGGACGACACCC
TTTTGGGCCAGTGACCAGAACTGGGAGGAACTCTCTCGTCGAGAGCTTGA
GCGGCTTTCAAGATAACGGCTGCATTACGGCATGCACAAATCCGAGGCGT
CGCTGTGCGTGCATGATGTTGGATCAGGGCTGTGTCTGCAGGTGGCCTAA
CATCACCCGTACACGAATCGGCAACCCCCGGATGTATTGGCTGAGGCGTT
CGTTTATTTAAATCATTGTGTAGGTAGCCTGGGACAACCGTACATGTTGG
AGGTGTTTGTTTATTTTACAGTCGTTTTCTAGGTAGCTTCAAGACACACG
TACATTCCTTGGGTATCGTATATGGGTTGACAGATAGTCGCGGCCGTTTG
CCGGTAGTTTTACCACGCCTGCACAAGAGTCGGTACGCTTCCAACTTTAG
TTAAAACGGATGGGGTATCGCTGTATAAGTCCTTGGAGTGTGTTTCGTGG
AGCGTTTTTCGTGCAATAAGTGACGTGTCCGTTGGGGTTGAGATTGTTGT
GTTCTGGATGTTTATTTCGTATAGGGAATAGCGTTTTCCCGTAGCTTGCG
CACGTTGCTCTGCTCCGTCTGGGCGTCGATATTCGTGTGATCCAGTTTCG
TTTAGGGTGGTATTCATAGAGTTGGATTTTCCGAGTTGTTGCAAGAGTGC
TAAGTACCGTGGGGTATAGAGTACCGTACCGTACCCATTTCGGGAACGCA
GCATCGTTGTGCTGTGCGACTTGGTGTGCCGTGCGACCTAGTGTTGTAGG
TGCTTGCATAGTACCGCGGGAGTGTGACACCGTTTTCCGGTGTGATTTGG
TGTTGTAGGTGCTTTGCGC
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protein sequence of Ec-00_004830.1

>Ec-00_004830.1 ID=Ec-00_004830.1|Name=Ec-00_004830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=75bp
MSRGRHHTAPRGPRDIAFCKGGDAAVTGARLPESRAEYPGRIGGHRNVVG
TSPRTTATRRRAQGAGFHKCRDSS*
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mRNA from alignment at chr_00:6621875..6626531+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004830.1 ID=Ec-00_004830.1|Name=Ec-00_004830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4657bp|location=Sequence derived from alignment at chr_00:6621875..6626531+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTACGGTTACATAGTTTACGGTACAGGGAGTTGCACCCTTCGGGATT
ATAGCGTTGTTCCCATAGGGTGGTGTTGACAGTTCTGTACAATTGCGGAA
CCCCTTGTCTCGGGCTTCGTGCTGCCGCACGAAGCCCACTTACTTACTTA
CTTCCTGTTGGCATCCCGTGCTCAGCAAAAATCAAAGTGCATTCCGTATC
CACGACGGGAGACCTTCTCCACGCTCCACAAGCCTACATCTAGGCTTCCT
CTACCGCTGTTCAAGCGCGCATCTTCGAACTCGGTACTGATCGAGAGGCT
GCTACCATCAGGTCGGTAGCTTTTGGTAATCATTCCGGAAAGCGTGACTC
CCTTCCTATACACACAACCCTGGACTTGTGGCCACGAATGGCCACAAGCA
CATGCCTAGATAGACCCACTCAAGTCGCGAGATCCATCCCAAGTCAGAGC
CTCTCTTTCCGTCACATGGTGTCCGATCCGAGCACTGTAGTACATGTGCT
GTTGTGGTACTGCTGTTGTGTAGACGTGAGGTACAGTAGCTCACGCTCAC
GCTGGGAAATGCGGCGAGATTATTATTTCTGCCGCGACCCTGCCTGCATG
TTGTTTTGTCGTACTGTATTGTCTATCCTTGCGGCTCGTGCTTCGAGCCG
AACTGTCCATCGCGAAAGCACACCTGGGAGCCTCTACGCTCTTGGGTGTC
TGTCCCTTTGCTTTCAACCCGTTGTGGCCCTAGTTTTCTTGCTTGCTATA
GCGTGCTGTGGGTACAGGTTACTGCTGCAGGAGACCCTGTGGCTCACACT
TTTTCACTGCCGTGGGGAGAAGGAGGACCCTGTGGCTCACACTTCTTTAC
TGCCGTGGGAAGAAGGAGGACCTGGCCGCACACGCAGACGACGGAGGCTG
GCTGTTTCCTGATGGGCGAGTTGCATGCAAGCTTGAGCCACACACACCGT
GTTGACCCCTGTTGCCGTCTTTCCCTTTCGGCGGCCGATAATGATGATGT
TTATGAGAAATTAAGTGCATAAGTCCGAGCTTGAGTTGCAGATTCAGGCC
TTGCGGAAACCGGTGTGTATGTGTCTCGCTTTCGCAACCTCTTCCTGGTC
TTGGAATACATGCGTCTGGTCTTTGCTGCTGGATGCAAGTCCACGTCCAA
GGCCCAGGCCCAAGCGTCGCTAACATCAACGCGCCAATTCTTGCTACCAC
GTACGTACCACGCCCACCGATGGGCGCTGAACCCCAATTTTCCATTTCCT
CTGCTGCTTTCAAGCGTTTGCGATGTCGCGCGGCCGTCATCACACAGCTC
CCCGGGGACCGCGGGATATTGCTTTCTGCAAGGGGGGAGACGCCGCGGTC
ACCGGAGCACGGCTGCCTGAAAGCAGGGCGGAATACCCAGGCAGGATTGG
AGGCCATCGGAATGTCGTCGGCACGTCTCCCAGAACAACAGCAACGAGGC
GACGCGCACAGGGGGCAGGTTTTCACAAGTGTCGTGACAGCAGTTGAAGG
CTTGGGGGTACGTAAAGAGGCAAGACGTTGAATAGGCTAATGCGAACAAA
GGGAACGAGTTGCCAGCCACCGCAGAGTCATGGATTGCCTCCTTCATTAT
TATTATTGTTATTATTTATTTTTATATGCTCGTTTTTTGCGACGTTCTTT
TCTTTATCCTTCTGCTTCCTGTTTGGGGACATTTCTTTTTTTCCAACAAT
CATTCCCATTTCTGAGTGTTCATGCCGACGTTGTCTCATAATCCTTTGTT
TGCAACCACGCGGCTTGCACACTGGTGCATGTCCAGGCGTGCAACCCCAT
GCCTAACTCTCAGCTAACTAACCCTAACATGTGCTGGTATTTTGATTTTT
TTTTTTCCGGTGTCTGCGGTATATTTTTCAAGGCTCACATGCTTCCCTCA
TGCGATGCGTGGGTCATCGCGCATGGCATAATTTCCGTGCACGGTTGCTA
TCAGCTCACTCGTCTCCCGACCAGTTTTTTTTTCGGCGGTGTGGTTGGCG
GGTGGAGAGAAATGTGCATTGGCTGACCCGGGTGACTACACCCATGGCCG
CCCCCCCGGAGGGGGGAGGTGCCGCTGGGTGGCTGCACCGACGTCTGATA
TTGGTGTAGCTGCCACTCCTGGCGGCTGCATTGATGTTGGGTATTAGGTG
TAGCTGCCACTCCTGGCGGCTGCACCGGTGTCTGGTATTGGTGTAGCTGC
CACTCCTGGCGGCTGCACCGACGTCTGATATTGGTGTAGCTGCCATTCCT
GGCGGCTGCATGATGTTTGGTATTAGGTGTAGCTGCCACTCCTGGCGGCT
GCACCGGTGTCTGGTATTGGTGTAGCTGCCGCTCCTAGCGGCTGCACCTG
TACCACTGCTCGTCTTGTTGAGAGCGATGAAACGTGTGTAGCGACCACTC
TGGTTGCTGCACGTAATACATGCGATACGTTTTCCCCGAATAGTGCTCAT
GCATGCTGTCACGTAGGGGTGAGGTGGAGTTTTGCTCTTGGCAACACACG
CTGCGCTGTCGGTAGAAACCGCTTTCGATGCCGAGATAGGACGTCGAAGA
GAGCACCCTCGCACCTTTGGAAACGACCGCGGATGGATGCTTTGACTTCA
GCAAGGGGGGATGTCGCGCGGCCGTCATCACACAGCTCCCCGGGGACCGC
GGGATATTGCTTTCTGCAAGGGGGGAGACGCCGCGGTCACCGGAGCACGG
CTGCCTGAAAGCAGGGCGGAATACCCAGGCAGGATTGGAGGCCATCGGAA
TGTCGTCGGCACGTCTCCCAGAACAACAGCAACGAGGCGACGCGCACAGG
GAGCAGGTTTTCACAAGTGTCGTGACAGCAGTTGAAGGCTTGGGGGTACG
TAAAGAGGCAAGACGTTGAGTAGGCTAATGCGAACAAAGGGAACGAGTTG
CCAGCCACCGCAGAGTCCATGTTAGCCGACATAGTCGTGCTGCCCCACAC
ACGTACGACCACGCAGGGATGGAAGTGACCTGGTCTTTGATATTCTACAG
TTGTCACTGGCCCACCTTGGCGATATGCATTGGCAGTTTGTGGTGGCCAT
GTTGCACTACGGATGTCGAAAGAATAAGAGATCGTTACCCTTTCTCCTAA
CACAACCCCCTTCGAGAACGGGTAGTTTGCCCGTCCCTTGCACGTTCATA
GAGGCTCTTTGTGGCGCCGCGCGTTGAGACATCGCCAGCGTCGTAGAGCA
CGTTGTGCCCGACGCGCGCTCGCGGCTCCCGGTTGCAGGGCCCGCTGAGG
AGAACGTCGATGGCTCTTTTCGGGACGATTTGTCGCCCGCGGTAGAGGAC
GCGTCAGTCGAGGCTCTGGGCCCAGAGTTGAACGGTGTGAGATTGGCCGA
TCTAGACCCTGCACAGGCAGACCAAAAGGAGAATGCGGTAGCTCACGTCC
CTTCCCCACCCTTGGTCCATGGGGCCGTTAACGCTAACCCCTCCGCCCTT
GGAGCGCTGCCCTTTGCGATGTGCACAGCGTTGGATGCCGAGTCCCAGGG
ACTACGCCGTAGCGGCAGGACTCGCACGCCATCCGTACGCCTGCGGCCCA
TCGGCGACGTGCAGCTGCCACCGGTGGGAGAGACGGGGCTTCTCCAGGAC
GAGCAGGAGGCTGGACCCACACCTGTCGAAGCCGTGCCACCCGCACCCCC
GCTTCCAGCGCTACCGCCGTCGCCCGTCCATCGAAGCCACGACGACATCG
GTGAAGTGCTCGCGGCGCGGGGGGAGGTACCGAGGTCGTCGTCGGGACCA
GATGTTCGTGGGACGTCAGCCATTGACCGGGCGGCGCAGGTTCTCACCAA
GCCATCCATCCTCGCCCAACGGCAACGGGACGACACCCTTTTGGGCCAGT
GACCAGAACTGGGAGGAACTCTCTCGTCGAGAGCTTGAGCGGCTTTCAAG
ATAACGGCTGCATTACGGCATGCACAAATCCGAGGCGTCGCTGTGCGTGC
ATGATGTTGGATCAGGGCTGTGTCTGCAGGTGGCCTAACATCACCCGTAC
ACGAATCGGCAACCCCCGGATGTATTGGCTGAGGCGTTCGTTTATTTAAA
TCATTGTGTAGGTAGCCTGGGACAACCGTACATGTTGGAGGTGTTTGTTT
ATTTTACAGTCGTTTTCTAGGTAGCTTCAAGACACACGTACATTCCTTGG
GTATCGTATATGGGTTGACAGATAGTCGCGGCCGTTTGCCGGTAGTTTTA
CCACGCCTGCACAAGAGTCGGTACGCTTCCAACTTTAGTTAAAACGGATG
GGGTATCGCTGTATAAGTCCTTGGAGTGTGTTTCGTGGAGCGTTTTTCGT
GCAATAAGTGACGTGTCCGTTGGGGTTGAGATTGTTGTGTTCTGGATGTT
TATTTCGTATAGGGAATAGCGTTTTCCCGTAGCTTGCGCACGTTGCTCTG
CTCCGTCTGGGCGTCGATATTCGTGTGATCCAGTTTCGTTTAGGGTGGTA
TTCATAGAGTTGGATTTTCCGAGTTGTTGCAAGAGTGCTAAGTACCGTGG
GGTATAGAGTACCGTACCGTACCCATTTCGGGAACGCAGCATCGTTGTGC
TGTGCGACTTGGTGTGCCGTGCGACCTAGTGTTGTAGGTGCTTGCATAGT
ACCGCGGGAGTGTGACACCGTTTTCCGGTGTGATTTGGTGTTGTAGGTGC
TTTGCGC
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Coding sequence (CDS) from alignment at chr_00:6621875..6626531+

>Ec-00_004830.1 ID=Ec-00_004830.1|Name=Ec-00_004830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=225bp|location=Sequence derived from alignment at chr_00:6621875..6626531+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGCGCGGCCGTCATCACACAGCTCCCCGGGGACCGCGGGATATTGC
TTTCTGCAAGGGGGGAGACGCCGCGGTCACCGGAGCACGGCTGCCTGAAA
GCAGGGCGGAATACCCAGGCAGGATTGGAGGCCATCGGAATGTCGTCGGC
ACGTCTCCCAGAACAACAGCAACGAGGCGACGCGCACAGGGAGCAGGTTT
TCACAAGTGTCGTGACAGCAGTTGA
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Synonyms
The feature 'Ec-00_004830.1' has the following synonyms
Synonym
Esi0364_0027
Esi_0364_0027