Ec-00_004810.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004810.2
Unique Name	Ec-00_004810.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	134

Homology

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D7FZD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD8_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.100e-67
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKEYIYQFLELLGVARERVRFVRKV 351
            MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKEYIYQFLELLGVARERVRFVRKV
Sbjct:    1 MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKEYIYQFLELLGVARERVRFVRKV 117

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D7FKP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.280e-24
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNACLS----RQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKEYIYQFLELLGVARERVRFVRKV 351
            M+DVY    GFFWND+D V PN+C S    R +     R  P +     KVVVLTQ YG +YYH +VE+LSR+ +VLD+L ENPDI+VAV    +S +EYIY   ELLG++++RV F+ K+
Sbjct:  128 MSDVYIEEHGFFWNDQDLVAPNSCRSSVNARDVNTHETRLRPGEARH-GKVVVLTQEYGLAYYHLLVENLSRITIVLDMLLENPDIKVAVHSISESHREYIYGLFELLGISQDRVLFIHKI 247

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D7FK32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK32_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.090e-21
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRR---DSSKEYIYQFLELLGVARERVRFVR 345
            MADV+ N  G+ WN+KD +VP +C S   G   +  +P   E  EKVVV+ Q +GD YYHF+VE+L R+ ++LDVL EN DI+VAV   +   +S   +IY+ L LLG+  ERV F++
Sbjct:  107 MADVFINKLGYVWNEKDYIVPKSCKSHLFGPRASSILPTSAERHEKVVVIAQYWGDEYYHFLVEALPRITLMLDVLVENLDIKVAVHAPKLGSESHTTFIYELLALLGIDSERVIFIQ 224

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D7FKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.510e-18
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQV 252
            MADV+ N  G+FWNDK  V PN+C S +  ++ N     D ESFEKVVVL Q YG +YYH +VE+LSR+ VV DVL ENPD+++
Sbjct:  227 MADVFINRDGYFWNDKVFVAPNSCRSTEKASLTNTRHRPDTESFEKVVVLAQEYGQAYYHLLVENLSRITVVKDVLMENPDVKI 310

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.860e-15
Identity = 39/87 (44.83%), Postives = 61/87 (70.11%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVP 261
            MADV+ N+ G+ WN+KD +VP +C +  LG     ++P   ES++KV V+TQ +G+ Y+HF+VE+L R+  +LD+L+EN DI+   P
Sbjct:  493 MADVFVNNLGYVWNEKDYIVPKSCEANLLGPRGRTALPTSAESYDKVFVITQRWGNEYFHFLVENLPRITPMLDILRENLDIKALYP 579

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D8LB14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB14_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-14
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNACLSRQL-GNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAV---PRRRDSSKEYIYQFLELLGVARERVRFV 342
            + DV+ NS G+ WN+K+ +VP +C S +  G+    S+P +    +KV V+TQ +GD+Y+HF+ E L R+ ++LDVL  N +I++AV   P      K Y  + + LLG+  ER+ FV
Sbjct:  522 LTDVFINSSGYVWNEKNYIVPKSCGSAEFDGSSARWSLPRNAPRHDKVFVITQHWGDAYFHFLSECLPRVTLMLDVLLANSEIKIAVHAPPPTWSDRKHYTSELMALLGIQEERLIFV 639

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BLAST of Ec-00_004810.2 vs. uniprot
Match: A0A6H5JMF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.720e-14
Identity = 63/173 (36.42%), Postives = 81/173 (46.82%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDK------------DSVVPNACLSRQLG-NIFNRSVPLDIESFE--KVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVA---------------------VPR--------------------RRDSSKEYIYQFLELLGVARERVRFVRKV 351
            MADVY    GFFWNDK            + V PN+C S   G N+      L        KVVVLTQ YG +YYH +VE+LSR+ +VLDVL ENPDI+VA                     +P                     + +  +EYIY   ELLG+++ERV F+ K+
Sbjct:  118 MADVYVEEHGFFWNDKARLCQLIPWCIWNLVAPNSCQSLVNGRNVDTNETRLGPGEARHGKVVVLTQEYGLAYYHLLVENLSRITIVLDVLLENPDIKVAQFSFLFFRAGTYACDQLHDDPMPSTCRLVKSCSRPLIFTVEKHAKVELLREYIYGLFELLGISQERVMFIEKI 290

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BLAST of Ec-00_004810.2 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.330e-11
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDKDSVVPNAC-LSRQ-----LGNIFNRSVPLDIESFEKVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRR---------DSSKEYIYQFLELLGVARERVRFVRKVRPSQLS 369
            MADVY +  G  WN+ D ++P  C + R+             +  + ES+EKV V+TQ +  +YYHF VE L R+ ++LDVL ENPDI +A+   +          +  E   +  E+LG++R+RV    K   ++L+
Sbjct:  340 MADVYISCKGAVWNENDFILPVNCDIPRRHEADDAREQAREGLQAEDESYEKVFVMTQEWNPNYYHFTVEHLPRITLMLDVLLENPDIMIAMHYSQHDKLHQGGFSNEIETHMEMFEILGISRDRVVLAMKQMHAELA 477

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BLAST of Ec-00_004810.2 vs. uniprot
Match: A0A6H5JM62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM62_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.040e-10
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 1

Query:  136 KVVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKE---YIYQFLELLGVARERVRFVR 345
            KVVV+ Q +GD YYHF+VE+L R+ ++LDVL EN DI+VAV   +  S+    YIY+ L LLG+  ERV F++
Sbjct:    6 KVVVIAQYWGDEYYHFLVEALPRITLMLDVLVENLDIKVAVHAPKPGSESHTTYIYELLALLGIESERVIFIQ 78

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BLAST of Ec-00_004810.2 vs. uniprot
Match: A0A6H5KEC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.840e-8
Identity = 57/185 (30.81%), Postives = 81/185 (43.78%), Query Frame = 1

Query:    1 MADVYFNSFGFFWNDK---------------DS-------------------VVPNACLSRQL-GNIFNRSVPLDIESFEK-----------------------VVVLTQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAV---PRRRDSSKEYIYQFLELLGVARERVRF----VRKVRPS 360
            +ADV+ NS G+ WNDK               DS                   +VP +C S +  G+    S+P++    EK                       V V+TQ +GD+Y+HF+ ESL R+ ++LDVL  NP+I+VAV   P        Y  + + LLG+  ER+ F    VRK R S
Sbjct:   91 LADVFINSSGYVWNDKARLTARLSLKWHGNNDSRSTIFELFVSLLYIQKQNYIVPKSCGSAEFDGSSARWSLPMNAPRHEKSSLILVTRRAFLLDACISWVHVKVFVITQHWGDAYFHFLSESLPRVTLMLDVLLANPEIKVAVHAPPPSWSDRMHYASELMALLGIQEERLIFLDTEVRKRRHS 275

The following BLAST results are available for this feature:

BLAST of Ec-00_004810.2 vs. uniprot

BLAST of Ec-00_004810.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
D7FZD8_ECTSI	1.100e-67	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FKP0_ECTSI	7.280e-24	50.41	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FK32_ECTSI	1.090e-21	46.61	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FKN9_ECTSI	1.510e-18	55.95	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FK27_ECTSI	2.860e-15	44.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LB14_ECTSI	1.800e-14	38.98	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JMF5_9PHAE	3.720e-14	36.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWK6_ECTSI	5.330e-11	34.06	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JM62_9PHAE	2.040e-10	52.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEC0_9PHAE	9.840e-8	30.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:6574504..6578650 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	240.0
Seed ortholog evalue	6.5e-61
Seed eggNOG ortholog	2880.D7FZD8
Length	2572
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004810.2
EggNOG free text desc.	Protein of unknown function (DUF563)
EggNOG OGs	2E14A@1,2S8GN@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004810	Ec-00_004810	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 6574504..6583639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004810.2	Ec-00_004810.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 6574504..6576480 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004810.2.1	Ec-00_004810.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6574504..6574551 +
Ec-00_004810.2.2	Ec-00_004810.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6574780..6574869 +
Ec-00_004810.2.3	Ec-00_004810.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6575097..6575207 +
Ec-00_004810.2.4	Ec-00_004810.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 6576328..6578650 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004810.2	CDS:Ec-00_004810.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 6574504..6574551 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004810	3UTR:Ec-00_004810.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 6576481..6578650 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:6574504..6578650+
coding sequence from alignment at chr_00:6574504..6578650+

mRNA sequence

>Ec-00_004810.2 ID=Ec-00_004810.2|Name=Ec-00_004810.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=134bp
MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVL
TQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKEYIYQF
LELLGVARERVRFVRKVRPSQLSGYCDPRNWWM*

spliced messenger RNA

>Ec-00_004810.2 ID=Ec-00_004810.2|Name=Ec-00_004810.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2572bp|location=Sequence derived from alignment at chr_00:6574504..6578650+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACGTGTACTTCAACTCCTTCGGGTTCTTCTGGAATGACAAGGA
CTCTGTGGTGCCCAACGCTTGCCTGTCAAGACAATTAGGCAATATCTTCA
ACCGGAGCGTCCCGCTCGACATCGAGAGCTTTGAAAAGGTGGTGGTGCTC
ACGCAGGGGTATGGAGACTCGTACTACCACTTTGTTGTGGAAAGCCTATC
CCGACTACCCGTCGTGCTTGACGTTCTTAAAGAAAACCCCGACATCCAGG
TCGCCGTGCCCCGTCGCCGCGACAGTAGCAAGGAATACATTTATCAGTTC
CTGGAGCTGCTCGGTGTAGCAAGAGAGCGCGTCCGATTTGTGAGGAAGGT
GAGACCCAGTCAGCTGTCTGGTTATTGTGATCCAAGAAATTGGTGGATGT
GAGATGAGCGTTTGGGATTCGCGGACGAGGTCGACGTATAATTTTCAAAT
TATATGGCGGTGAGTTGGTGAGCTGTTGCACTATGCTGGGAAATTGAGTG
GTGTCGGTCAGGGCGCGGATGAAGAAAGGGTTGGCTTTGGAAAACCCCCG
AAGCCGCCGACGTTGCTACAGCCAATTTCAGCAGTTGAGGCTAAAAACAA
ACTCCCATGTTACTTTCTATCAGCGAAGATGCGACTCATGCAGTGCGGAT
CTCACCGGGTCATTCGTTTATGTACTTGGACAACCAATGCAGGGTTCAAT
CTGACCGCAGCACAGCAGCTTGTGCTTGCGGTACGGTGAATTCGCCAACC
GGGCCCGCTCCTTGAACCGCCCCTTGCCCACGTGGATAGAAGAGGAGTGT
TTCACGCATCTTTCAATGGCTCGACCGCAGTTTCACGTCATCAAATCCGA
ACCGTTAACGCAGAAAACTTTTTCATTGTAAGGGGCGCGAATGCCGTCCC
TCGACAGAAATGTTCCAACGTTCCTACCGTCAGTGTTCCGCCGAAGACCG
CAGTTCTGAAGACCCCGAACGTCTCACAAACGACCCCTCCCTCAACGCAC
AACCGCGGCTCTGACGCAATTTTGCTCCGGACCGGCTCTCTGACAATCAC
TTTCTCCATCCACACTTGGGGGATTTCAGAGTCCCGGTTGCTTAATAGTT
ACCCTCCTGCTCTTGTCTTTCTTGATATTTTTTACCAGGTTCACGCAGGC
CTTGCTATTATTCCTTCCTCGACAGTGTGCTTTAGGGCAAACGCGGCGCC
GATCACCATGCTGAGGCACGCCCTCTTGCAGGTTAGAATCAGTGTAAGCT
TAACGCCACATGAAAGGCACATATACTGGAGTGTTTCAATGGTAAGGTGA
GCATTTCGTTATCCATGTGTTTTTCGACCTTGCGGCCAGTTTACATCTTG
GCCGACTCCGAATCACCTGGGAACAGCATCGCGGTTTCTTTATGTTACGA
ATAATCTTTTCCGCCATGGATCGAAATTCGAAGTTGAGGACGAGAGCAAG
ATCACGAACTCTCCCTCAAGGTTCAGATTTGCACGGATGGGCAATATCAA
TAAAAAAACAAGATTGACCCGATTTTGCTGATTTCCCTTTAAACCTTCAG
CGAAACTTGAAAGCGCACGAATATAACTCGAAATCCATGGTAGAACAGGG
CATCGGTGATGTTCTAAGACCGCGATGACAGCTGTATGTTTTCTCACAGA
CACGAGCATAAGATGATTCGGTCGTCAGCATGGCACGCTGCCCAAAGAAG
AATTGTTTGTTGCCATCAAATAGCGGTCTCCCGACGTTGTGGTTGCCTGT
CGTCGTGTTCGTTTGGGCTCAGTTCGTGTTCGATTGTGCAGTAGGTATTT
CGCTGATGGTACCTACTGTTAGTGGGGATCACCCGCAGGCTCCCTGGTCG
CGAGACGCACAAGTTCACCAATGACGCAATTCTTGAATCATCAGATGCCA
GTAAGCCCCGTCAATAGACCGAAGTAGAGCGTAGTTTGACAAACCAGCAA
TAGAAATCCCGATCGAGCTTTTTGTAACGACGCTTGCATGTGCTACAACA
ACATTTCGTTCCTAACTACCTCTTGACCCGACACCAGAAACGATGGTCGT
TATTTTTCTGAAATCCCCTGGGATGACTAGCATCGTGTATATCCTCGCAT
TTAACTTTTCTAAAATAAGTTTCCCGCTTTGATTCCCATCATTCCATCGC
AGCACCCCACGGGCTCCTCTTAGTTTCAATAGAACCCCAAAAATAGCCAC
AAGATGATTTTCTAAGGAATGTTGAAAGCCCACGTATTTCTTCTTACAGT
TTTCTTAAGGGCAGTTTTTGCACTCTGTCGACGACAACTACAAACACACC
CAGTCACAGGCGACCAACGGAGAAGCTAGATCAGGTGCAGCCAAAATGAT
TGGTGGTCACCACCCACCAGAATACATAACAACCGATTTCTTGGCGCTAG
ACCACGTATTAAGCTAGGGTGTGACAACAAGTATCCTATGCTTTCATCCA
CGTGTGCGTGGGGTAGCAGTCACCTGCTTCAATCAACAGGGAGACGCGTC
AGTCTTGGTTGTTAACCGATGGAAACAAAAGTGTATTTTTACTTGGAAAT
TGAGGAAGTTGTCAAACGGCTN

protein sequence of Ec-00_004810.2

>Ec-00_004810.2 ID=Ec-00_004810.2|Name=Ec-00_004810.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=134bp
MADVYFNSFGFFWNDKDSVVPNACLSRQLGNIFNRSVPLDIESFEKVVVL
TQGYGDSYYHFVVESLSRLPVVLDVLKENPDIQVAVPRRRDSSKEYIYQF
LELLGVARERVRFVRKVRPSQLSGYCDPRNWWM*

mRNA from alignment at chr_00:6574504..6578650+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004810.2 ID=Ec-00_004810.2|Name=Ec-00_004810.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4147bp|location=Sequence derived from alignment at chr_00:6574504..6578650+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGACGTGTACTTCAACTCCTTCGGGTTCTTCTGGAATGACAAGGT
GCACCTTTCCCGATCGAAGATGACCTTCAGCTCTTCGTACTTCATGTATC
AACACGCGCGTTTTCACGCATATGGTGTGACTCGAGTGCAGTATGCATTG
AGCAAGTCGATACCTGCAGTATTGGAGTCCTCAAATTCGTTTTTAATTTT
TTCAGAACGGACGGCGGTGTACTGCCGACCACGTCAAATCGAATCGTGCA
TTCTCAAATTCTTCGCTGTTTTGCAGGACTCTGTGGTGCCCAACGCTTGC
CTGTCAAGACAATTAGGCAATATCTTCAACCGGAGCGTCCCGCTCGACAT
CGAGAGCTTTGAAAAGGTACACTGGCTATTGATAAACAAATGTAAGCAAG
GTATTGGTATTCCAAGTTTGACCACAAGCTTTGAAGTGCAGGTTCATATA
TTGGCAAGGGTCCCAGGACAAAGCCTGCTCAAAAAGTGTCATGTAATCGT
GAGTCACGAGGGTATCGCAAGTACATGGTGCGCCCGTGCAGGCGGTCCGC
TTTATCAAGCTGCTTCGATGCGTTTGGTTCCCTTTTCTCTCAGGTGGTGG
TGCTCACGCAGGGGTATGGAGACTCGTACTACCACTTTGTTGTGGAAAGC
CTATCCCGACTACCCGTCGTGCTTGACGTTCTTAAAGAAAACCCCGACAT
CCAGGTACGTTCAGCGTAGTGCAGACAGGTCTATGCGCCCGGCGGGAGCC
TTAGGCCATGGAAGAAATTGTGGAATGACAACACCTCCAATCGCCAATCA
ACGCCGTCGACGGCGTACAACAGCTTTCACATAGTTAGTGTGTGGATGCT
GAGGCAGGAAAGTAAGAGTGGCTGCGATGCTTCGACGTACGATAAATAGC
CATCCCGAGTTCATGTAAAGCAACTTTTGTTGTTTATGCTGCTGTATTTC
ATGCAATTTCGTTTTTCAGTGTTTTCCTCGTGGAGAACTTGGTACAGCGT
TAAGGGTGCACAAACTGGCTGTTTTGCGCTCCTCTCTAAAGGTCCTTGTT
TCAGACACTATACAGCCTCAAGGCGCTTGGCCAACTTGCGTTTTCGACTC
CATCACGTGATTCCCGTCTTGTGTTCAGAACACGAGTCTGTTGCAGTCGT
GAGAGGGAGACTCCCCAAAATTTCAAAGTAGTAGACTACCGTAATCTCCT
TTGTCATCCCCTCCCCACACCCAAGTTCGCCGGTAAAGGAGTTAAAACTT
GTCGTACACCCGGGGAAGATGGCTTTTTGGGAAAAACAAATTGATGCCGC
CTTCGAGGTTAGGTTTTACGCGCGGTATCCCCCCGGGGTACCGTTGGATG
GGGGACCAGTTTGACAGTTTTGGGGGCCCTAAAGCATCAAGATCACGTCT
GCAGTGAATTTCTGCATTTCAGGTGGGACATGCACGCACGCGTGTTCAGC
ATAGTGTTCGCGATATTTTGCGCTTGTAGACGATTTCATAGCGGCGGCAC
AGCTGCGTGCTCTCCTGCTTCCTCTCCCTCCCGAAATCATGCTCGTAGAT
TTTATCCGTCGGTACTTTCCGAAGTTGCTAGGGAACAAGAGTGGGCGGCT
ATGTCTTTCATATTCACCCGGGGTACGGGTATTTAAAAAAACAAAATCTA
TCCCCTCCCCGAAGGTCGACAAAGGATATTACGGTATGCATCACATCCCT
ATATCCGTTCTTCTGTATGCCGCGTTCGTCCGTGGTCTTAACTTGCTTCC
CGTCGGTAACTTGCCTGGTCCATCGTGATTTCATTTCACAACCGACGCCA
ACGCTTGGTGGTCGACGTGAGAAGGTCGCCGTGCCCCGTCGCCGCGACAG
TAGCAAGGAATACATTTATCAGTTCCTGGAGCTGCTCGGTGTAGCAAGAG
AGCGCGTCCGATTTGTGAGGAAGGTGAGACCCAGTCAGCTGTCTGGTTAT
TGTGATCCAAGAAATTGGTGGATGTGAGATGAGCGTTTGGGATTCGCGGA
CGAGGTCGACGTATAATTTTCAAATTATATGGCGGTGAGTTGGTGAGCTG
TTGCACTATGCTGGGAAATTGAGTGGTGTCGGTCAGGGCGCGGATGAAGA
AAGGGTTGGCTTTGGAAAACCCCCGAAGCCGCCGACGTTGCTACAGCCAA
TTTCAGCAGTTGAGGCTAAAAACAAACTCCCATGTTACTTTCTATCAGCG
AAGATGCGACTCATGCAGTGCGGATCTCACCGGGTCATTCGTTTATGTAC
TTGGACAACCAATGCAGGGTTCAATCTGACCGCAGCACAGCAGCTTGTGC
TTGCGGTACGGTGAATTCGCCAACCGGGCCCGCTCCTTGAACCGCCCCTT
GCCCACGTGGATAGAAGAGGAGTGTTTCACGCATCTTTCAATGGCTCGAC
CGCAGTTTCACGTCATCAAATCCGAACCGTTAACGCAGAAAACTTTTTCA
TTGTAAGGGGCGCGAATGCCGTCCCTCGACAGAAATGTTCCAACGTTCCT
ACCGTCAGTGTTCCGCCGAAGACCGCAGTTCTGAAGACCCCGAACGTCTC
ACAAACGACCCCTCCCTCAACGCACAACCGCGGCTCTGACGCAATTTTGC
TCCGGACCGGCTCTCTGACAATCACTTTCTCCATCCACACTTGGGGGATT
TCAGAGTCCCGGTTGCTTAATAGTTACCCTCCTGCTCTTGTCTTTCTTGA
TATTTTTTACCAGGTTCACGCAGGCCTTGCTATTATTCCTTCCTCGACAG
TGTGCTTTAGGGCAAACGCGGCGCCGATCACCATGCTGAGGCACGCCCTC
TTGCAGGTTAGAATCAGTGTAAGCTTAACGCCACATGAAAGGCACATATA
CTGGAGTGTTTCAATGGTAAGGTGAGCATTTCGTTATCCATGTGTTTTTC
GACCTTGCGGCCAGTTTACATCTTGGCCGACTCCGAATCACCTGGGAACA
GCATCGCGGTTTCTTTATGTTACGAATAATCTTTTCCGCCATGGATCGAA
ATTCGAAGTTGAGGACGAGAGCAAGATCACGAACTCTCCCTCAAGGTTCA
GATTTGCACGGATGGGCAATATCAATAAAAAAACAAGATTGACCCGATTT
TGCTGATTTCCCTTTAAACCTTCAGCGAAACTTGAAAGCGCACGAATATA
ACTCGAAATCCATGGTAGAACAGGGCATCGGTGATGTTCTAAGACCGCGA
TGACAGCTGTATGTTTTCTCACAGACACGAGCATAAGATGATTCGGTCGT
CAGCATGGCACGCTGCCCAAAGAAGAATTGTTTGTTGCCATCAAATAGCG
GTCTCCCGACGTTGTGGTTGCCTGTCGTCGTGTTCGTTTGGGCTCAGTTC
GTGTTCGATTGTGCAGTAGGTATTTCGCTGATGGTACCTACTGTTAGTGG
GGATCACCCGCAGGCTCCCTGGTCGCGAGACGCACAAGTTCACCAATGAC
GCAATTCTTGAATCATCAGATGCCAGTAAGCCCCGTCAATAGACCGAAGT
AGAGCGTAGTTTGACAAACCAGCAATAGAAATCCCGATCGAGCTTTTTGT
AACGACGCTTGCATGTGCTACAACAACATTTCGTTCCTAACTACCTCTTG
ACCCGACACCAGAAACGATGGTCGTTATTTTTCTGAAATCCCCTGGGATG
ACTAGCATCGTGTATATCCTCGCATTTAACTTTTCTAAAATAAGTTTCCC
GCTTTGATTCCCATCATTCCATCGCAGCACCCCACGGGCTCCTCTTAGTT
TCAATAGAACCCCAAAAATAGCCACAAGATGATTTTCTAAGGAATGTTGA
AAGCCCACGTATTTCTTCTTACAGTTTTCTTAAGGGCAGTTTTTGCACTC
TGTCGACGACAACTACAAACACACCCAGTCACAGGCGACCAACGGAGAAG
CTAGATCAGGTGCAGCCAAAATGATTGGTGGTCACCACCCACCAGAATAC
ATAACAACCGATTTCTTGGCGCTAGACCACGTATTAAGCTAGGGTGTGAC
AACAAGTATCCTATGCTTTCATCCACGTGTGCGTGGGGTAGCAGTCACCT
GCTTCAATCAACAGGGAGACGCGTCAGTCTTGGTTGTTAACCGATGGAAA
CAAAAGTGTATTTTTACTTGGAAATTGAGGAAGTTGTCAAACGGCTN

Coding sequence (CDS) from alignment at chr_00:6574504..6578650+

>Ec-00_004810.2 ID=Ec-00_004810.2|Name=Ec-00_004810.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=402bp|location=Sequence derived from alignment at chr_00:6574504..6578650+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGACGTGTACTTCAACTCCTTCGGGTTCTTCTGGAATGACAAGGA
CTCTGTGGTGCCCAACGCTTGCCTGTCAAGACAATTAGGCAATATCTTCA
ACCGGAGCGTCCCGCTCGACATCGAGAGCTTTGAAAAGGTGGTGGTGCTC
ACGCAGGGGTATGGAGACTCGTACTACCACTTTGTTGTGGAAAGCCTATC
CCGACTACCCGTCGTGCTTGACGTTCTTAAAGAAAACCCCGACATCCAGG
TCGCCGTGCCCCGTCGCCGCGACAGTAGCAAGGAATACATTTATCAGTTC
CTGGAGCTGCTCGGTGTAGCAAGAGAGCGCGTCCGATTTGTGAGGAAGGT
GAGACCCAGTCAGCTGTCTGGTTATTGTGATCCAAGAAATTGGTGGATGT
GA

Synonyms

The feature 'Ec-00_004810.2' has the following synonyms


Synonym
Esi0364_0018
Esi_0364_0018