Ec-00_004800.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004800.2
Unique NameEc-00_004800.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length169
Homology
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BLAST of Ec-00_004800.2 vs. uniprot
Match: D7FKP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-14
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1 
Query: 3943 QGLHKLEDWADLGEEMSHVQGAVVIRRPDLVDADS-PSSLLAPAKSVNYVPTLQSYFSLFKSSFIPG*GLVLTEETGRY 4176
            QG H LE+W DL EEMSHV GAVV+RRP+L+D +S P+ LL+PA S++YV TLQSYFS+FK S      ++L +  G Y
Sbjct:    2 QGEHILEEWMDLAEEMSHVDGAVVVRRPELIDVESSPTRLLSPANSLDYVKTLQSYFSIFKDSLFSR--MMLVKHPGLY 78
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: D7FKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.400e-11
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1 
Query: 3922 CSAARVYQGLHKLEDWADLGEEMSHVQGAVVIRRPDLVDA-DSPSSLLAPAKSVNYVPTLQSYFSLFKSSFIPG*GLVLTEETGRYLAEIRM 4194
            CS+    +G    E+W D+GEEMS V GA V+RRP+L+DA  SP+ LL+P  S++YV TLQSYF +F+ S        +  ET   L E+ M
Sbjct:   94 CSSPPCVEGNRIHEEWMDIGEEMSRVDGAAVVRRPELIDAGSSPTPLLSPVNSLDYVKTLQSYFPIFRDSLFSS----MRVETQEGLEELPM 181
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.540e-10
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 
Query: 3910 PSLGCSAARVYQGLHKLEDWADLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSSFIP 4137
            P   C+      G H    WADLGEEMS ++GAVV+RRPDLV A     +L P  ++++V T QSYF++F+SS  P
Sbjct:  705 PRAQCAHPPCSNGKHMHAAWADLGEEMSRIKGAVVVRRPDLVKAPD---MLGPVNTLDFVKTFQSYFAIFRSSLFP 777
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 9.420e-10
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1 
Query: 3922 CSAARVYQGLHKLEDWADLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSSFIPG*GLVLTEETGRYLAEIRM 4194
            C      +G H   DWADLGEEMS VQGA V+ R DLV       +LAPA S+++V TLQSYF++F+ S  P   ++     G  LA+++M
Sbjct:  753 CGHPPCGKGKHIHADWADLGEEMSRVQGAAVVERADLVKIPG---VLAPANSLDFVKTLQSYFAIFRGSLFPTRSMI----EGHRLAQVQM 836
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: A0A6H5JMF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.090e-9
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1 
Query: 3973 DLGEEMSHVQGAVVIRRPDLVDADS-PSSLLAPAKSVNYVPTLQSYFSLFKSSFIPG*GLVLTEETGRY 4176
            DL EEMSHV GAVV+RRP+L+D +S P+ LL+PA S++YV TLQSYF +FK S      ++L +  G Y
Sbjct:    2 DLAEEMSHVDGAVVVRRPELIDVESSPTRLLSPANSLDYVKTLQSYFPIFKESLFSR--MMLVKHPGLY 68
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: A0A6H5L1R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.050e-7
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1 
Query: 3916 LGCSAARVYQGLHK-LEDWADLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSSFI 4134
            L C +     G+H       DLGEEMSHVQGAVV+RRPDL  A +P S+ APA++V++V TLQSYF + +SS +
Sbjct:  197 LRCPSPPCCLGVHTHTYRGGDLGEEMSHVQGAVVVRRPDL--AQAPESV-APAQNVDFVKTLQSYFPISQSSLL 267
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: D8LIQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.920e-7
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1 
Query: 3910 PSLGCSA---ARVYQGLHKLEDWADLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSSFI 4134
            PS  C     A  YQG        DLGEEMSH+QGAVV+RRPDLV A  P SL APA  +++V T QSYF + +SS +
Sbjct:   50 PSPPCCLGMHAHTYQG-------GDLGEEMSHIQGAVVVRRPDLVRA--PGSL-APAHDLDFVKTFQSYFQIAQSSLL 117
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: D8LIQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.750e-7
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1 
Query: 3910 PSLGCSA---ARVYQGLHKLEDWADLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSSFI 4134
            PS  C     A  YQG        DLGEEMSH+QGAVV+RRPDLV A  P SL APA  +++V T QSYF + +SS +
Sbjct:  174 PSPPCCLGMHAHTYQG-------GDLGEEMSHIQGAVVVRRPDLVRA--PGSL-APAHDLDFVKTFQSYFQIAQSSLL 241
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: D7FWK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK6_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.040e-7
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query: 3973 DLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSSFI 4134
            DLGEEMSHVQGAVV+RRPDL  A +P S+ APA+ V++V TLQSYF + +SS +
Sbjct:  219 DLGEEMSHVQGAVVVRRPDL--AQAPGSV-APAQDVDFVKTLQSYFPISQSSLL 269
[Close]
BLAST of Ec-00_004800.2 vs. uniprot
Match: A0A6H5L311_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L311_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.010e-7
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1 
Query: 3904 VDPSLGCSAARVYQGLHKLEDW--ADLGEEMSHVQGAVVIRRPDLVDADSPSSLLAPAKSVNYVPTLQSYFSLFKSS----FIPG*GLVLTEET 4167
            +   L C +     G H L  +   DLGEEMSH+QGAVV+RRPDL  A +P SL APA  +++V T QSYF + ++S    F+   G  LT ET
Sbjct:  211 ISSQLRCPSPPCCLGTH-LHTYRGGDLGEEMSHIQGAVVVRRPDL--AWAPGSL-APAHDLDFVKTFQSYFPISQNSLLRRFVEADGFNLTSET 300
The following BLAST results are available for this feature:
BLAST of Ec-00_004800.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FKP0_ECTSI1.060e-1456.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKN9_ECTSI2.400e-1145.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA5_9PHAE8.540e-1047.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEH3_9PHAE9.420e-1045.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMF5_9PHAE1.090e-955.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1R7_9PHAE1.050e-752.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIQ6_ECTSI1.920e-752.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIQ5_ECTSI2.750e-752.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWK6_ECTSI4.040e-764.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L311_9PHAE7.010e-745.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:6568735..6573035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length4301
Hectar predicted targeting categoryother localisation
Gene idEc-00_004800.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004800Ec-00_004800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 6568735..6573035 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004800.2.1Ec-00_004800.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 6568735..6573035 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0048005UTR:Ec-00_004800.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 6568735..6570366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004800.2CDS:Ec-00_004800.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 6570367..6570873 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0048003UTR:Ec-00_004800.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 6570874..6573035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004800.2Ec-00_004800.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 6570367..6570873 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004800.2 ID=Ec-00_004800.2|Name=Ec-00_004800.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=169bp
MDVHNVPWCSMDHRRTPWHAAAARSTYSWLPHGRSWGSVVLHGTVVGLHG
VPSVSMEVGICFPIFLSFGVGLCDDVTGVVERRDRDVCGYPGCLDCVLHR
GRPLQCGTLSSQCQCLHRASQRRFGTDPGDCQMGFGRMFSFTPRTTAAFS
LSFPRLPCEYFVQERKGL*
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spliced messenger RNA

>Ec-00_004800.2 ID=Ec-00_004800.2|Name=Ec-00_004800.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4301bp|location=Sequence derived from alignment at chr_00:6568735..6573035+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GAGTGAGCACCCCACCCGAAGCAATCGCCATCAATCATCCATCATCCCGA
CGCGTCGGAATATTGACAACCCGCACGGCAGAATATCTGCACGGTGATTT
ATTTGCTGCCCCGGTGACGGCACCTCTGCTCTGGTGCCTCCTTCCTTTCA
TTGATTCATTGAGTGAGGTGCAACATTTTGAAAGCGTTTGGCCCGAAGAT
GAATGGGTTTCACCGTGTATTGCGGGCTTTGCCCGCGTAATTAAACTCCT
AAAAGCTCTGTCTCGGTACAACTAAAAATTGCCGTATAATTCCGAGCGTG
TGTAGCGCGGGATCGGGTGTGAAGCTTATTTTCCAGAACCACTTTCGGAG
AGTTGTTCACTACGCCGCAGCTTTGTGACATCGCTCACGCATCACCGCGA
TTGTTCGCGACTACACCATTGACGATTCTTCTCCCGATCCAACTTCTGTG
CAGATGGTGTAAATCGCCACTCTAGCCGCGAGAGGCGACCGTATCCCTTT
CAAATATAGGTCTTGTGTCCCTCCCACCGAGCGTCATTTTTGCGAACGCG
TGGACCCTCTGACCTTGTGGGCGCCGATGGCGCACGAAGAGATGACGAGT
TTCGCACAAACAAGATGGGGGCGCACGCTGCAAACCCGATCAAGGTCGCT
TGATTAGGTGCCCTCCCTGTTTAACCGTGACTCGTGATCCGTATATTTAC
GTGTTGATTGATGCCTCTTGTGGAAAGGGTAGTGACTGTGCCGCGGATGT
GAGAGCCAGCTATGACGTTGATCGAAAAAGTAATAAACCCGTCGTGTCGA
ACCGCGCCAAATGTTGCTGGTCAATAGATGGCGCCACGACTCACTTAGGA
ACCTCTTTCGCCGAGGCTCGGTTTCTTTTTTTCTTTCATCTTTTTCATCA
AGGGCTCGCCTTCCCTCGTTTCAGGGGGGGAGGCTGCGCGTAAGCCACGT
AGCAATATTTGCATCTCGACGAAGCTCGTGACGGTGAACGATGAACGAAC
ACTGTTCGCGAAGGAGCCAGCACGATGGGGATATATACGAAGTATAGTGT
ACATGGTCAAATACGGAGTTAGTCTCTGCACTCTTCTTCGTCATCATGTG
CATGCACGCAGCCCTCAATATGGAAAGATGCCAAAGGTGGATGGTGCTCG
CGTCCGCAATGAGTTGTCTCTCGCTCTCTGTGTCGTCATCACCAGCGGTG
GCAGGACAGACAGCAAAGGCCAGCTGTTGTGACACGTAGATTGACCTGCA
GACAGACACCACTGATAATGCCATGCACCAGAGACTGGCTGGCTTTTTTT
CTCCTTTGAGACAGGAGGAGAGTTGCGAAGTTGGATGACCCTGTGCGATA
TCCCCGACCCCTGTGACTAAACCCAACTAAATCATTTTAAACTAGCTTCT
TTATCGCATACGGGTGCACTATCCCCGGCCTGTGCGATATCCCTGCCCTG
TGCGTTCTCCCGCACTATTACGGTTTTCATGTGAGCCCTGTGCACTGAAA
TTTAACACAGACTGTACAGAACGTTACACAGTGCGCATCAGGCATCATCC
ATCGGCTTTAATTTTACGTAATATTCCACGGTGCAAAATTCCATCGCCGT
GGAACTCTGTAGAAACCCCTTCAACTCCATGGATGGATGTCCATAATGTT
CCATGGTGTTCAATGGACCACCGTAGAACTCCATGGCATGCCGCGGCGGC
CCGTAGCACATACTCATGGTTACCCCACGGACGTTCTTGGGGCTCCGTGG
TACTCCATGGAACTGTTGTGGGTCTCCATGGGGTTCCATCGGTTTCCATG
GAAGTTGGCATTTGTTTTCCTATTTTCTTGAGTTTTGGTGTTGGGCTTTG
TGATGACGTCACTGGTGTAGTAGAGAGACGCGACAGAGATGTCTGCGGCT
ACCCTGGGTGCCTTGATTGTGTGCTGCATCGTGGAAGACCCCTTCAATGT
GGAACGCTTTCTAGTCAGTGTCAATGTTTACACCGTGCTTCGCAGAGACG
ATTCGGGACAGACCCGGGTGATTGTCAAATGGGCTTTGGTAGGATGTTCT
CTTTCACTCCCCGTACAACGGCTGCGTTTTCTTTATCATTTCCACGCCTA
CCGTGTGAATATTTTGTTCAAGAACGAAAGGGTTTATAGCTCCACATCGC
GTCAACGTTGAAGTGAGAAATATGAGGTTGCATTTTAGGTGGTGGTAGAA
GATGGTTGATCTACTTTATTAAGTGTTGTCATCTGGGCTTTACGTACACT
CTGTTAAATACTGGGACTTCGTATATCTCTACTGGGGGGAGTTTTTTTTT
TTTTGCATGTGCATGTTGAACCATATCTCGCACTGGAGACTCACTCACCG
GATTCATACAGCATCAGAAGGCTACTTACACCTCTGGTTGTAAGTTTTCG
ATCGGCTATGTCTCGGTACGGTACCCTAGAGAGCACCATGATTTCATGAT
GGGAAACGGTCTATCAGACCCGCCGGCACAACACAAAGACCCCTCCGTTA
CCTGGCTTATTTTGTGCCATAGAACTCACTGCTGTGTATGTTTTTGTTCC
CGCGCATGTGCACCTCATCCCCTGCCCTTGCTCCACTGCTGCCGCTGCGA
CGAATTTTGCTGCTGTTGAGGATATATGCCCAGTGTATTGAAAACTTTAG
TTTGTGCCTCAATATCAATTTTTGGCCACTGCAGACCTCCGCTGAGAAAT
CGTGGAAAATGCTCCGAAGTTGGGTCTCTAGCTTAGTAGCTTCAGTACAA
CGTGGTAACGCGCACATCTAATGCCCACAAACCAAAAGCTGTCAACATGT
TCCGTCTCAGGTAGGCCATCCTTCGTTGATTTCAACGGTTTCTCTCAAGT
CAATTTTGTTGATCATGTGATGTGTTTGGCAGCGGCGGAGCTTAATCATA
TTGTTTCGATATCGGTAAAACCAAACATCTTGATGTGTTTTTTTTGTCAT
CGGTCTTCGTTACTCTCTCTTGTGTCTTTGTTCGAAGTCTCGTCAGGTGA
CGGTATTGAAAAAGGCAACAGAGAAACCATCAACACCGACAGCGTACACA
GCTTTGTGCGTCGAGAGTGCGTGAAATACCGCACGAAACATCCCCAGGGA
TCTTCATGGGTTTGTGATGATTTGTCTGAGTCTCGCCAAGGTTTAGCCCT
GAACAAAATTTTGAATAAGGGACCACCATGGCTCCAGCTGTGAGTGACTT
TGGATCATTAAAACAATTATTATTTTCCTTGCGGTGTTGCTGCTGTCGCA
GGTGGTGTCGTAATGACCTCGTACCGTGGTCATCGCGGACCTTTTCGGGT
GGGGTTGCTTGTGTTCGCAATGGCCTCCTGGCGTCTGCTTTTGACGACGG
GGACGGAGACAGACACGTTGCCGTCCCCGAGCATTGGCGGCGAGCACTCA
AACTCGAACGACGGGCCACTGAAGAGGGATACAGTCTCGCCTTTCATAGC
ACAAGTTGCTTCCACGGGAACTCGTTCCCCACAAGATGACTCATCTGATG
GAAATGGCAGAAATCCCCAGTCGTCGGGTTCACGGGCGAATGCTGTGTGG
GGGGAGCTTCTCGAGGCAAGAGGGCACCCCCCGTGTTCGAACCCGCCGTT
CAAAGAGGTCAGCTCCGCCCTCGTTCATATACTCTGTACCTGGTTGCTTG
TCCCGATTTGCTCACATCTGGGACTAACGCGCGTCTATGCTCCAAGCGAA
AATTTTGTTCACGCAGTTGCTTCCGGGCGCGTACTATTGCGTTCTTCTGT
ACATCAGTGACATCTTGTTTCACGCTCCGTTTTTGACGCCCGCTGTTTCA
CTTCCTCGGTGCAGCTATCGAAACCGGCCAGTAGGGATCCACAATTCATT
AACATACGTCTCATTTTGGCGAAAAGGCTGAAACATGTTCTTCGATGGTC
GGTTTGTTGACCCATCTTTGGGTTGCTCTGCTGCTCGAGTGTACCAGGGA
CTGCACAAACTGGAGGACTGGGCTGACCTAGGCGAAGAAATGTCACACGT
CCAGGGGGCGGTGGTGATCAGGCGGCCAGATCTAGTTGACGCGGATTCCC
CCTCTTCCTTGCTGGCACCGGCCAAGAGCGTAAACTACGTGCCTACGCTA
CAATCCTACTTTTCTTTGTTCAAGAGCTCCTTCATTCCCGGGTAGGGGTT
GGTATTGACAGAGGAAACTGGTAGATACTTAGCAGAGATTCGCATGCGCA
GCACTGTCATGAAATCAAGTCGACGAATCCCGCATGTCGCAGTCGAAAAG
TGCCAGCTGAATGTCGTCTCTGTGGCGATCCTGTTGTGTTTACGCCGCTT
C
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protein sequence of Ec-00_004800.2

>Ec-00_004800.2 ID=Ec-00_004800.2|Name=Ec-00_004800.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=169bp
MDVHNVPWCSMDHRRTPWHAAAARSTYSWLPHGRSWGSVVLHGTVVGLHG
VPSVSMEVGICFPIFLSFGVGLCDDVTGVVERRDRDVCGYPGCLDCVLHR
GRPLQCGTLSSQCQCLHRASQRRFGTDPGDCQMGFGRMFSFTPRTTAAFS
LSFPRLPCEYFVQERKGL*
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mRNA from alignment at chr_00:6568735..6573035+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004800.2 ID=Ec-00_004800.2|Name=Ec-00_004800.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4301bp|location=Sequence derived from alignment at chr_00:6568735..6573035+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GAGTGAGCACCCCACCCGAAGCAATCGCCATCAATCATCCATCATCCCGA
CGCGTCGGAATATTGACAACCCGCACGGCAGAATATCTGCACGGTGATTT
ATTTGCTGCCCCGGTGACGGCACCTCTGCTCTGGTGCCTCCTTCCTTTCA
TTGATTCATTGAGTGAGGTGCAACATTTTGAAAGCGTTTGGCCCGAAGAT
GAATGGGTTTCACCGTGTATTGCGGGCTTTGCCCGCGTAATTAAACTCCT
AAAAGCTCTGTCTCGGTACAACTAAAAATTGCCGTATAATTCCGAGCGTG
TGTAGCGCGGGATCGGGTGTGAAGCTTATTTTCCAGAACCACTTTCGGAG
AGTTGTTCACTACGCCGCAGCTTTGTGACATCGCTCACGCATCACCGCGA
TTGTTCGCGACTACACCATTGACGATTCTTCTCCCGATCCAACTTCTGTG
CAGATGGTGTAAATCGCCACTCTAGCCGCGAGAGGCGACCGTATCCCTTT
CAAATATAGGTCTTGTGTCCCTCCCACCGAGCGTCATTTTTGCGAACGCG
TGGACCCTCTGACCTTGTGGGCGCCGATGGCGCACGAAGAGATGACGAGT
TTCGCACAAACAAGATGGGGGCGCACGCTGCAAACCCGATCAAGGTCGCT
TGATTAGGTGCCCTCCCTGTTTAACCGTGACTCGTGATCCGTATATTTAC
GTGTTGATTGATGCCTCTTGTGGAAAGGGTAGTGACTGTGCCGCGGATGT
GAGAGCCAGCTATGACGTTGATCGAAAAAGTAATAAACCCGTCGTGTCGA
ACCGCGCCAAATGTTGCTGGTCAATAGATGGCGCCACGACTCACTTAGGA
ACCTCTTTCGCCGAGGCTCGGTTTCTTTTTTTCTTTCATCTTTTTCATCA
AGGGCTCGCCTTCCCTCGTTTCAGGGGGGGAGGCTGCGCGTAAGCCACGT
AGCAATATTTGCATCTCGACGAAGCTCGTGACGGTGAACGATGAACGAAC
ACTGTTCGCGAAGGAGCCAGCACGATGGGGATATATACGAAGTATAGTGT
ACATGGTCAAATACGGAGTTAGTCTCTGCACTCTTCTTCGTCATCATGTG
CATGCACGCAGCCCTCAATATGGAAAGATGCCAAAGGTGGATGGTGCTCG
CGTCCGCAATGAGTTGTCTCTCGCTCTCTGTGTCGTCATCACCAGCGGTG
GCAGGACAGACAGCAAAGGCCAGCTGTTGTGACACGTAGATTGACCTGCA
GACAGACACCACTGATAATGCCATGCACCAGAGACTGGCTGGCTTTTTTT
CTCCTTTGAGACAGGAGGAGAGTTGCGAAGTTGGATGACCCTGTGCGATA
TCCCCGACCCCTGTGACTAAACCCAACTAAATCATTTTAAACTAGCTTCT
TTATCGCATACGGGTGCACTATCCCCGGCCTGTGCGATATCCCTGCCCTG
TGCGTTCTCCCGCACTATTACGGTTTTCATGTGAGCCCTGTGCACTGAAA
TTTAACACAGACTGTACAGAACGTTACACAGTGCGCATCAGGCATCATCC
ATCGGCTTTAATTTTACGTAATATTCCACGGTGCAAAATTCCATCGCCGT
GGAACTCTGTAGAAACCCCTTCAACTCCATGGATGGATGTCCATAATGTT
CCATGGTGTTCAATGGACCACCGTAGAACTCCATGGCATGCCGCGGCGGC
CCGTAGCACATACTCATGGTTACCCCACGGACGTTCTTGGGGCTCCGTGG
TACTCCATGGAACTGTTGTGGGTCTCCATGGGGTTCCATCGGTTTCCATG
GAAGTTGGCATTTGTTTTCCTATTTTCTTGAGTTTTGGTGTTGGGCTTTG
TGATGACGTCACTGGTGTAGTAGAGAGACGCGACAGAGATGTCTGCGGCT
ACCCTGGGTGCCTTGATTGTGTGCTGCATCGTGGAAGACCCCTTCAATGT
GGAACGCTTTCTAGTCAGTGTCAATGTTTACACCGTGCTTCGCAGAGACG
ATTCGGGACAGACCCGGGTGATTGTCAAATGGGCTTTGGTAGGATGTTCT
CTTTCACTCCCCGTACAACGGCTGCGTTTTCTTTATCATTTCCACGCCTA
CCGTGTGAATATTTTGTTCAAGAACGAAAGGGTTTATAGCTCCACATCGC
GTCAACGTTGAAGTGAGAAATATGAGGTTGCATTTTAGGTGGTGGTAGAA
GATGGTTGATCTACTTTATTAAGTGTTGTCATCTGGGCTTTACGTACACT
CTGTTAAATACTGGGACTTCGTATATCTCTACTGGGGGGAGTTTTTTTTT
TTTTGCATGTGCATGTTGAACCATATCTCGCACTGGAGACTCACTCACCG
GATTCATACAGCATCAGAAGGCTACTTACACCTCTGGTTGTAAGTTTTCG
ATCGGCTATGTCTCGGTACGGTACCCTAGAGAGCACCATGATTTCATGAT
GGGAAACGGTCTATCAGACCCGCCGGCACAACACAAAGACCCCTCCGTTA
CCTGGCTTATTTTGTGCCATAGAACTCACTGCTGTGTATGTTTTTGTTCC
CGCGCATGTGCACCTCATCCCCTGCCCTTGCTCCACTGCTGCCGCTGCGA
CGAATTTTGCTGCTGTTGAGGATATATGCCCAGTGTATTGAAAACTTTAG
TTTGTGCCTCAATATCAATTTTTGGCCACTGCAGACCTCCGCTGAGAAAT
CGTGGAAAATGCTCCGAAGTTGGGTCTCTAGCTTAGTAGCTTCAGTACAA
CGTGGTAACGCGCACATCTAATGCCCACAAACCAAAAGCTGTCAACATGT
TCCGTCTCAGGTAGGCCATCCTTCGTTGATTTCAACGGTTTCTCTCAAGT
CAATTTTGTTGATCATGTGATGTGTTTGGCAGCGGCGGAGCTTAATCATA
TTGTTTCGATATCGGTAAAACCAAACATCTTGATGTGTTTTTTTTGTCAT
CGGTCTTCGTTACTCTCTCTTGTGTCTTTGTTCGAAGTCTCGTCAGGTGA
CGGTATTGAAAAAGGCAACAGAGAAACCATCAACACCGACAGCGTACACA
GCTTTGTGCGTCGAGAGTGCGTGAAATACCGCACGAAACATCCCCAGGGA
TCTTCATGGGTTTGTGATGATTTGTCTGAGTCTCGCCAAGGTTTAGCCCT
GAACAAAATTTTGAATAAGGGACCACCATGGCTCCAGCTGTGAGTGACTT
TGGATCATTAAAACAATTATTATTTTCCTTGCGGTGTTGCTGCTGTCGCA
GGTGGTGTCGTAATGACCTCGTACCGTGGTCATCGCGGACCTTTTCGGGT
GGGGTTGCTTGTGTTCGCAATGGCCTCCTGGCGTCTGCTTTTGACGACGG
GGACGGAGACAGACACGTTGCCGTCCCCGAGCATTGGCGGCGAGCACTCA
AACTCGAACGACGGGCCACTGAAGAGGGATACAGTCTCGCCTTTCATAGC
ACAAGTTGCTTCCACGGGAACTCGTTCCCCACAAGATGACTCATCTGATG
GAAATGGCAGAAATCCCCAGTCGTCGGGTTCACGGGCGAATGCTGTGTGG
GGGGAGCTTCTCGAGGCAAGAGGGCACCCCCCGTGTTCGAACCCGCCGTT
CAAAGAGGTCAGCTCCGCCCTCGTTCATATACTCTGTACCTGGTTGCTTG
TCCCGATTTGCTCACATCTGGGACTAACGCGCGTCTATGCTCCAAGCGAA
AATTTTGTTCACGCAGTTGCTTCCGGGCGCGTACTATTGCGTTCTTCTGT
ACATCAGTGACATCTTGTTTCACGCTCCGTTTTTGACGCCCGCTGTTTCA
CTTCCTCGGTGCAGCTATCGAAACCGGCCAGTAGGGATCCACAATTCATT
AACATACGTCTCATTTTGGCGAAAAGGCTGAAACATGTTCTTCGATGGTC
GGTTTGTTGACCCATCTTTGGGTTGCTCTGCTGCTCGAGTGTACCAGGGA
CTGCACAAACTGGAGGACTGGGCTGACCTAGGCGAAGAAATGTCACACGT
CCAGGGGGCGGTGGTGATCAGGCGGCCAGATCTAGTTGACGCGGATTCCC
CCTCTTCCTTGCTGGCACCGGCCAAGAGCGTAAACTACGTGCCTACGCTA
CAATCCTACTTTTCTTTGTTCAAGAGCTCCTTCATTCCCGGGTAGGGGTT
GGTATTGACAGAGGAAACTGGTAGATACTTAGCAGAGATTCGCATGCGCA
GCACTGTCATGAAATCAAGTCGACGAATCCCGCATGTCGCAGTCGAAAAG
TGCCAGCTGAATGTCGTCTCTGTGGCGATCCTGTTGTGTTTACGCCGCTT
C
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Coding sequence (CDS) from alignment at chr_00:6568735..6573035+

>Ec-00_004800.2 ID=Ec-00_004800.2|Name=Ec-00_004800.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=507bp|location=Sequence derived from alignment at chr_00:6568735..6573035+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGATGTCCATAATGTTCCATGGTGTTCAATGGACCACCGTAGAACTCC
ATGGCATGCCGCGGCGGCCCGTAGCACATACTCATGGTTACCCCACGGAC
GTTCTTGGGGCTCCGTGGTACTCCATGGAACTGTTGTGGGTCTCCATGGG
GTTCCATCGGTTTCCATGGAAGTTGGCATTTGTTTTCCTATTTTCTTGAG
TTTTGGTGTTGGGCTTTGTGATGACGTCACTGGTGTAGTAGAGAGACGCG
ACAGAGATGTCTGCGGCTACCCTGGGTGCCTTGATTGTGTGCTGCATCGT
GGAAGACCCCTTCAATGTGGAACGCTTTCTAGTCAGTGTCAATGTTTACA
CCGTGCTTCGCAGAGACGATTCGGGACAGACCCGGGTGATTGTCAAATGG
GCTTTGGTAGGATGTTCTCTTTCACTCCCCGTACAACGGCTGCGTTTTCT
TTATCATTTCCACGCCTACCGTGTGAATATTTTGTTCAAGAACGAAAGGG
TTTATAG
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Synonyms
The feature 'Ec-00_004800.2' has the following synonyms
Synonym
Esi364_0036
Esi_364_0036